Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)15.55■□□□□ 0.081e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)14.7□□□□□ -0.061e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-207ENST00000480987 752 ntTSL 413.4□□□□□ -0.261e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-205ENST00000469172 3356 ntTSL 210.77□□□□□ -0.681e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-203ENST00000461310 648 ntTSL 58.71□□□□□ -1.021e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-204ENST00000467249 566 ntTSL 27.85□□□□□ -1.151e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-209ENST00000486854 635 ntTSL 26.57□□□□□ -1.361e-6■■■□□ 15.2
DDX42Q86XP3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-6■■■□□ 15.1
DDX42Q86XP3 SEMA4C-203ENST00000449330 839 ntTSL 315.41■□□□□ 0.062e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-216ENST00000580888 710 ntTSL 218.56■□□□□ 0.561e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.87■□□□□ 0.451e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-208ENST00000578476 573 ntTSL 217.37■□□□□ 0.371e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.221e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-235ENST00000584860 1109 ntTSL 314.35□□□□□ -0.111e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-214ENST00000580461 909 ntTSL 213.56□□□□□ -0.241e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-213ENST00000579139 568 ntTSL 412.28□□□□□ -0.441e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-226ENST00000582848 591 ntTSL 312.24□□□□□ -0.451e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-236ENST00000584901 1021 ntTSL 212.24□□□□□ -0.451e-6■■■□□ 15.1
DDX42Q86XP3 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC12.11□□□□□ -0.471e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-218ENST00000581544 1444 ntTSL 211.88□□□□□ -0.511e-6■■■□□ 15.1
DDX42Q86XP3 SENP3-EIF4A1-201ENST00000614237 3519 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.521e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC11.42□□□□□ -0.581e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-223ENST00000582169 552 ntTSL 411.25□□□□□ -0.611e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-229ENST00000583802 563 ntTSL 411.17□□□□□ -0.621e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-215ENST00000580886 562 ntTSL 210.38□□□□□ -0.751e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-231ENST00000584054 716 ntTSL 210.38□□□□□ -0.751e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-233ENST00000584784 818 ntTSL 510.12□□□□□ -0.791e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-232ENST00000584712 782 ntTSL 29.94□□□□□ -0.821e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-209ENST00000578495 916 ntTSL 59.88□□□□□ -0.831e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-212ENST00000579085 569 ntTSL 49.42□□□□□ -0.91e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-237ENST00000585024 577 ntTSL 49.1□□□□□ -0.951e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-202ENST00000396527 1169 ntTSL 28.27□□□□□ -1.091e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-230ENST00000583899 665 ntTSL 36.53□□□□□ -1.361e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-211ENST00000578754 547 ntTSL 45.69□□□□□ -1.51e-6■■■□□ 15.1
DDX42Q86XP3 EIF4A1-224ENST00000582213 560 ntTSL 44.17□□□□□ -1.741e-6■■■□□ 15.1
DDX42Q86XP3 LDLR-206ENST00000557958 1881 ntTSL 217.71■□□□□ 0.431e-7■■■□□ 15
DDX42Q86XP3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.32■□□□□ 0.361e-7■■■□□ 15
DDX42Q86XP3 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.2■□□□□ 0.181e-7■■■□□ 15
DDX42Q86XP3 LDLR-213ENST00000560502 509 ntTSL 214.74□□□□□ -0.051e-7■■■□□ 15
DDX42Q86XP3 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC14.26□□□□□ -0.131e-7■■■□□ 15
DDX42Q86XP3 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.151e-7■■■□□ 15
DDX42Q86XP3 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.221e-7■■■□□ 15
DDX42Q86XP3 LDLR-208ENST00000558518 3617 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.391e-7■■■□□ 15
DDX42Q86XP3 HYOU1-202ENST00000526656 862 ntTSL 325.37■■□□□ 1.651e-5■■■□□ 15
DDX42Q86XP3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.531e-5■■■□□ 15
DDX42Q86XP3 HYOU1-203ENST00000527038 629 ntTSL 223.75■■□□□ 1.391e-5■■■□□ 15
DDX42Q86XP3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.89■■□□□ 1.251e-5■■■□□ 15
DDX42Q86XP3 G3BP1-207ENST00000520006 754 ntTSL 522.86■■□□□ 1.251e-5■■■□□ 15
DDX42Q86XP3 HYOU1-201ENST00000526354 568 ntTSL 222.81■■□□□ 1.241e-5■■■□□ 15
DDX42Q86XP3 HYOU1-214ENST00000534233 711 ntTSL 221.85■■□□□ 1.091e-5■■■□□ 15
DDX42Q86XP3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.29■■□□□ 11e-5■■■□□ 15
DDX42Q86XP3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.22■□□□□ 0.991e-5■■■□□ 15
DDX42Q86XP3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.981e-5■■■□□ 15
DDX42Q86XP3 LRCH4-204ENST00000476881 1675 ntTSL 221.03■□□□□ 0.961e-5■■■□□ 15
DDX42Q86XP3 FUT1-203ENST00000599826 681 ntTSL 1 (best)20.58■□□□□ 0.891e-5■■■□□ 15
DDX42Q86XP3 FUT1-204ENST00000601931 847 ntTSL 1 (best)20.58■□□□□ 0.891e-5■■■□□ 15
DDX42Q86XP3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.861e-5■■■□□ 15
DDX42Q86XP3 HYOU1-206ENST00000530467 552 ntTSL 420.33■□□□□ 0.851e-5■■■□□ 15
DDX42Q86XP3 FUT1-205ENST00000601988 815 ntTSL 1 (best)20.21■□□□□ 0.831e-5■■■□□ 15
DDX42Q86XP3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.91■□□□□ 0.781e-5■■■□□ 15
DDX42Q86XP3 ACAP3-208ENST00000472541 1946 ntTSL 519.85■□□□□ 0.771e-5■■■□□ 15
DDX42Q86XP3 HYOU1-211ENST00000532421 582 ntTSL 219.69■□□□□ 0.741e-5■■■□□ 15
DDX42Q86XP3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.681e-5■■■□□ 15
DDX42Q86XP3 HYOU1-205ENST00000529174 549 ntTSL 419.12■□□□□ 0.651e-5■■■□□ 15
DDX42Q86XP3 HYOU1-215ENST00000543287 2464 ntTSL 218.96■□□□□ 0.631e-5■■■□□ 15
DDX42Q86XP3 MIIP-203ENST00000466860 1709 ntTSL 518.62■□□□□ 0.571e-5■■■□□ 15
DDX42Q86XP3 ACAP3-212ENST00000492936 5319 ntTSL 1 (best)18.47■□□□□ 0.551e-5■■■□□ 15
DDX42Q86XP3 MIIP-207ENST00000498685 1392 ntTSL 218.44■□□□□ 0.541e-5■■■□□ 15
DDX42Q86XP3 G3BP1-212ENST00000522761 1763 ntTSL 217.79■□□□□ 0.441e-5■■■□□ 15
DDX42Q86XP3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.431e-5■■■□□ 15
DDX42Q86XP3 SUN1-222ENST00000457861 2975 ntTSL 217.72■□□□□ 0.431e-5■■■□□ 15
DDX42Q86XP3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.381e-5■■■□□ 15
DDX42Q86XP3 HYOU1-222ENST00000622474 549 ntTSL 217.1■□□□□ 0.331e-5■■■□□ 15
DDX42Q86XP3 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.281e-5■■■□□ 15
DDX42Q86XP3 LRCH4-202ENST00000467201 4754 ntTSL 216.58■□□□□ 0.251e-5■■■□□ 15
DDX42Q86XP3 G3BP1-208ENST00000520177 2700 ntTSL 1 (best)16.39■□□□□ 0.221e-5■■■□□ 15
DDX42Q86XP3 GET4-205ENST00000441491 682 ntTSL 516.16■□□□□ 0.181e-5■■■□□ 15
DDX42Q86XP3 G3BP1-213ENST00000523519 535 ntTSL 415.99■□□□□ 0.151e-5■■■□□ 15
DDX42Q86XP3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.141e-5■■■□□ 15
DDX42Q86XP3 G3BP1-209ENST00000520578 530 ntTSL 315.86■□□□□ 0.131e-5■■■□□ 15
DDX42Q86XP3 MIIP-202ENST00000460823 955 ntTSL 515.82■□□□□ 0.121e-5■■■□□ 15
DDX42Q86XP3 HYOU1-216ENST00000610597 491 ntTSL 415.77■□□□□ 0.121e-5■■■□□ 15
DDX42Q86XP3 GET4-203ENST00000412734 873 ntTSL 215.62■□□□□ 0.091e-5■■■□□ 15
DDX42Q86XP3 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.62■□□□□ 0.091e-5■■■□□ 15
DDX42Q86XP3 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15.16■□□□□ 0.021e-5■■■□□ 15
DDX42Q86XP3 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.021e-5■■■□□ 15
DDX42Q86XP3 FUT1-202ENST00000597220 649 ntTSL 1 (best)14.97□□□□□ -0.011e-5■■■□□ 15
DDX42Q86XP3 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.021e-5■■■□□ 15
DDX42Q86XP3 HYOU1-210ENST00000531968 550 ntTSL 414.73□□□□□ -0.051e-5■■■□□ 15
DDX42Q86XP3 SYVN1-210ENST00000528487 775 ntTSL 514.66□□□□□ -0.061e-5■■■□□ 15
DDX42Q86XP3 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.091e-5■■■□□ 15
DDX42Q86XP3 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.22□□□□□ -0.131e-5■■■□□ 15
DDX42Q86XP3 HYOU1-221ENST00000621959 3358 ntTSL 2 BASIC14.06□□□□□ -0.161e-5■■■□□ 15
DDX42Q86XP3 Z97192.3-201ENST00000420902 2975 ntTSL 2 BASIC13.85□□□□□ -0.191e-5■■■□□ 15
DDX42Q86XP3 HYOU1-217ENST00000612687 4360 ntTSL 5 BASIC13.37□□□□□ -0.271e-5■■■□□ 15
DDX42Q86XP3 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.31e-5■■■□□ 15
DDX42Q86XP3 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-5■■■□□ 15
DDX42Q86XP3 G3BP1-203ENST00000507878 577 ntTSL 412.3□□□□□ -0.441e-5■■■□□ 15
DDX42Q86XP3 G3BP1-204ENST00000517947 558 ntTSL 412.3□□□□□ -0.441e-5■■■□□ 15
DDX42Q86XP3 G3BP1-210ENST00000522367 580 ntTSL 312.3□□□□□ -0.441e-5■■■□□ 15
Retrieved 100 of 2,477 protein–RNA pairs in 175.8 ms