Protein–RNA interactions for Protein: P03897

MT-ND3, NADH-ubiquinone oxidoreductase chain 3, humanhuman

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND3P03897 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.24■■□□□ 1.63
MT-ND3P03897 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
MT-ND3P03897 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MT-ND3P03897 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
MT-ND3P03897 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
MT-ND3P03897 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
MT-ND3P03897 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC25.23■■□□□ 1.63
MT-ND3P03897 AC018358.1-201ENST00000631079 1402 ntBASIC25.22■■□□□ 1.63
MT-ND3P03897 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MT-ND3P03897 MIR6090-201ENST00000622481 60 ntBASIC25.22■■□□□ 1.63
MT-ND3P03897 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.22■■□□□ 1.63
MT-ND3P03897 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.22■■□□□ 1.63
MT-ND3P03897 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
MT-ND3P03897 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.21■■□□□ 1.63
MT-ND3P03897 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.21■■□□□ 1.63
MT-ND3P03897 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
MT-ND3P03897 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
MT-ND3P03897 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
MT-ND3P03897 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
MT-ND3P03897 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
MT-ND3P03897 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
MT-ND3P03897 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.19■■□□□ 1.62
MT-ND3P03897 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
MT-ND3P03897 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MT-ND3P03897 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
MT-ND3P03897 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MT-ND3P03897 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
MT-ND3P03897 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
MT-ND3P03897 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
MT-ND3P03897 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.17■■□□□ 1.62
MT-ND3P03897 AC135983.2-203ENST00000454486 1613 ntBASIC25.17■■□□□ 1.62
MT-ND3P03897 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.17■■□□□ 1.62
MT-ND3P03897 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.16■■□□□ 1.62
MT-ND3P03897 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
MT-ND3P03897 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
MT-ND3P03897 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.15■■□□□ 1.62
MT-ND3P03897 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.15■■□□□ 1.62
MT-ND3P03897 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.15■■□□□ 1.62
MT-ND3P03897 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.15■■□□□ 1.62
MT-ND3P03897 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MT-ND3P03897 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
MT-ND3P03897 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
MT-ND3P03897 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
MT-ND3P03897 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.14■■□□□ 1.62
MT-ND3P03897 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MT-ND3P03897 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.13■■□□□ 1.61
MT-ND3P03897 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MT-ND3P03897 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MT-ND3P03897 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MT-ND3P03897 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MT-ND3P03897 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MT-ND3P03897 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MT-ND3P03897 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MT-ND3P03897 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MT-ND3P03897 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MT-ND3P03897 WHAMMP2-203ENST00000563942 1603 ntBASIC25.1■■□□□ 1.61
MT-ND3P03897 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MT-ND3P03897 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.09■■□□□ 1.61
MT-ND3P03897 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
MT-ND3P03897 AC145676.1-201ENST00000514988 2004 ntBASIC25.09■■□□□ 1.61
MT-ND3P03897 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
MT-ND3P03897 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.09■■□□□ 1.61
MT-ND3P03897 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.09■■□□□ 1.61
MT-ND3P03897 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
MT-ND3P03897 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
MT-ND3P03897 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MT-ND3P03897 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MT-ND3P03897 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MT-ND3P03897 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.08■■□□□ 1.61
MT-ND3P03897 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
MT-ND3P03897 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.08■■□□□ 1.61
MT-ND3P03897 LINC01971-201ENST00000617888 1048 ntBASIC25.08■■□□□ 1.61
MT-ND3P03897 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.08■■□□□ 1.61
MT-ND3P03897 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
MT-ND3P03897 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
MT-ND3P03897 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MT-ND3P03897 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MT-ND3P03897 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.07■■□□□ 1.6
MT-ND3P03897 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.07■■□□□ 1.6
MT-ND3P03897 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MT-ND3P03897 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MT-ND3P03897 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.06■■□□□ 1.6
MT-ND3P03897 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.06■■□□□ 1.6
MT-ND3P03897 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MT-ND3P03897 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.06■■□□□ 1.6
MT-ND3P03897 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MT-ND3P03897 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MT-ND3P03897 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.05■■□□□ 1.6
MT-ND3P03897 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MT-ND3P03897 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MT-ND3P03897 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MT-ND3P03897 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MT-ND3P03897 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MT-ND3P03897 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.04■■□□□ 1.6
MT-ND3P03897 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MT-ND3P03897 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.04■■□□□ 1.6
MT-ND3P03897 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
MT-ND3P03897 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.03■■□□□ 1.6
MT-ND3P03897 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MT-ND3P03897 MIR639-201ENST00000384974 98 ntBASIC25.03■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms