Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAB3DO95716 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RAB3DO95716 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.11■□□□□ 0.97
RAB3DO95716 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAB3DO95716 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.11■□□□□ 0.97
RAB3DO95716 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAB3DO95716 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.1■□□□□ 0.97
RAB3DO95716 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.09■□□□□ 0.97
RAB3DO95716 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.09■□□□□ 0.97
RAB3DO95716 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAB3DO95716 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RAB3DO95716 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAB3DO95716 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RAB3DO95716 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RAB3DO95716 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.08■□□□□ 0.97
RAB3DO95716 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
RAB3DO95716 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RAB3DO95716 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.07■□□□□ 0.96
RAB3DO95716 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RAB3DO95716 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.07■□□□□ 0.96
RAB3DO95716 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RAB3DO95716 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RAB3DO95716 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RAB3DO95716 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RAB3DO95716 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
RAB3DO95716 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RAB3DO95716 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.06■□□□□ 0.96
RAB3DO95716 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RAB3DO95716 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RAB3DO95716 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.05■□□□□ 0.96
RAB3DO95716 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.05■□□□□ 0.96
RAB3DO95716 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RAB3DO95716 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RAB3DO95716 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RAB3DO95716 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RAB3DO95716 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RAB3DO95716 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RAB3DO95716 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAB3DO95716 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RAB3DO95716 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.03■□□□□ 0.96
RAB3DO95716 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RAB3DO95716 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.02■□□□□ 0.96
RAB3DO95716 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.02■□□□□ 0.96
RAB3DO95716 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
RAB3DO95716 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
RAB3DO95716 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RAB3DO95716 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAB3DO95716 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RAB3DO95716 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RAB3DO95716 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAB3DO95716 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RAB3DO95716 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAB3DO95716 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAB3DO95716 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RAB3DO95716 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RAB3DO95716 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RAB3DO95716 AP004609.3-201ENST00000610705 1884 ntBASIC20.98■□□□□ 0.95
RAB3DO95716 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAB3DO95716 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAB3DO95716 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAB3DO95716 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RAB3DO95716 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAB3DO95716 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAB3DO95716 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RAB3DO95716 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RAB3DO95716 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.97■□□□□ 0.95
RAB3DO95716 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.97■□□□□ 0.95
RAB3DO95716 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAB3DO95716 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.96■□□□□ 0.95
RAB3DO95716 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RAB3DO95716 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.95■□□□□ 0.94
RAB3DO95716 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
RAB3DO95716 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RAB3DO95716 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAB3DO95716 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RAB3DO95716 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
RAB3DO95716 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 AC135983.2-203ENST00000454486 1613 ntBASIC20.93■□□□□ 0.94
RAB3DO95716 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RAB3DO95716 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAB3DO95716 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RAB3DO95716 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RAB3DO95716 EBPL-202ENST00000378268 680 ntTSL 3 BASIC20.91■□□□□ 0.94
RAB3DO95716 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RAB3DO95716 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RAB3DO95716 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RAB3DO95716 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.9■□□□□ 0.94
RAB3DO95716 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RAB3DO95716 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms