Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV1-1A0A0B4J248 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV1-1A0A0B4J248 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TRAV1-1A0A0B4J248 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV1-1A0A0B4J248 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV1-1A0A0B4J248 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.54■□□□□ 0.72
TRAV1-1A0A0B4J248 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 AC012676.1-201ENST00000574705 1949 ntBASIC19.53■□□□□ 0.72
TRAV1-1A0A0B4J248 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-1A0A0B4J248 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-1A0A0B4J248 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV1-1A0A0B4J248 AC142381.3-201ENST00000568208 1670 ntBASIC19.52■□□□□ 0.71
TRAV1-1A0A0B4J248 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.52■□□□□ 0.71
TRAV1-1A0A0B4J248 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV1-1A0A0B4J248 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV1-1A0A0B4J248 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
TRAV1-1A0A0B4J248 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-1A0A0B4J248 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV1-1A0A0B4J248 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV1-1A0A0B4J248 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-1A0A0B4J248 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
TRAV1-1A0A0B4J248 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV1-1A0A0B4J248 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.49■□□□□ 0.71
TRAV1-1A0A0B4J248 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-1A0A0B4J248 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV1-1A0A0B4J248 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
TRAV1-1A0A0B4J248 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAV1-1A0A0B4J248 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRAV1-1A0A0B4J248 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV1-1A0A0B4J248 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRAV1-1A0A0B4J248 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV1-1A0A0B4J248 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV1-1A0A0B4J248 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.45■□□□□ 0.7
TRAV1-1A0A0B4J248 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 AP004609.3-201ENST00000610705 1884 ntBASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRAV1-1A0A0B4J248 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV1-1A0A0B4J248 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.43■□□□□ 0.7
TRAV1-1A0A0B4J248 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV1-1A0A0B4J248 AC133561.1-201ENST00000568600 2415 ntBASIC19.43■□□□□ 0.7
TRAV1-1A0A0B4J248 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV1-1A0A0B4J248 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 AL139125.2-201ENST00000623134 1869 ntBASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAV1-1A0A0B4J248 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 AL133380.1-201ENST00000506013 324 ntBASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.41■□□□□ 0.7
TRAV1-1A0A0B4J248 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRAV1-1A0A0B4J248 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TRAV1-1A0A0B4J248 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.39■□□□□ 0.69
TRAV1-1A0A0B4J248 ZNRF2P1-201ENST00000441407 443 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms