Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TMEM56-RWDD3S4R434 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM56-RWDD3S4R434 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM56-RWDD3S4R434 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TMEM56-RWDD3S4R434 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TMEM56-RWDD3S4R434 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC20.51■□□□□ 0.87
TMEM56-RWDD3S4R434 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TMEM56-RWDD3S4R434 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TMEM56-RWDD3S4R434 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TMEM56-RWDD3S4R434 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TMEM56-RWDD3S4R434 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TMEM56-RWDD3S4R434 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TMEM56-RWDD3S4R434 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TMEM56-RWDD3S4R434 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TMEM56-RWDD3S4R434 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.5■□□□□ 0.87
TMEM56-RWDD3S4R434 AC135983.2-203ENST00000454486 1613 ntBASIC20.49■□□□□ 0.87
TMEM56-RWDD3S4R434 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
TMEM56-RWDD3S4R434 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TMEM56-RWDD3S4R434 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TMEM56-RWDD3S4R434 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TMEM56-RWDD3S4R434 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 CAHM-201ENST00000604200 896 ntBASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 DUSP8P4-201ENST00000399538 1761 ntBASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TMEM56-RWDD3S4R434 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
TMEM56-RWDD3S4R434 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.47■□□□□ 0.87
TMEM56-RWDD3S4R434 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.47■□□□□ 0.87
TMEM56-RWDD3S4R434 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TMEM56-RWDD3S4R434 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.46■□□□□ 0.87
TMEM56-RWDD3S4R434 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TMEM56-RWDD3S4R434 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
TMEM56-RWDD3S4R434 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
TMEM56-RWDD3S4R434 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TMEM56-RWDD3S4R434 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TMEM56-RWDD3S4R434 AC092803.2-201ENST00000564287 1899 ntBASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TMEM56-RWDD3S4R434 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.42■□□□□ 0.86
TMEM56-RWDD3S4R434 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 WHAMMP2-203ENST00000563942 1603 ntBASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TMEM56-RWDD3S4R434 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TMEM56-RWDD3S4R434 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.4■□□□□ 0.86
TMEM56-RWDD3S4R434 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TMEM56-RWDD3S4R434 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TMEM56-RWDD3S4R434 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TMEM56-RWDD3S4R434 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
TMEM56-RWDD3S4R434 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TMEM56-RWDD3S4R434 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TMEM56-RWDD3S4R434 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TMEM56-RWDD3S4R434 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TMEM56-RWDD3S4R434 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.38■□□□□ 0.85
TMEM56-RWDD3S4R434 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.38■□□□□ 0.85
TMEM56-RWDD3S4R434 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TMEM56-RWDD3S4R434 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TMEM56-RWDD3S4R434 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.37■□□□□ 0.85
TMEM56-RWDD3S4R434 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TMEM56-RWDD3S4R434 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.36■□□□□ 0.85
TMEM56-RWDD3S4R434 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMEM56-RWDD3S4R434 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMEM56-RWDD3S4R434 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMEM56-RWDD3S4R434 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms