Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHANK1Q9Y566 AC129492.7-201ENST00000622992 756 ntBASIC22.98■■□□□ 1.27
SHANK1Q9Y566 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
SHANK1Q9Y566 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
SHANK1Q9Y566 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
SHANK1Q9Y566 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
SHANK1Q9Y566 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SHANK1Q9Y566 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SHANK1Q9Y566 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK1Q9Y566 ABCB10P1-201ENST00000614297 2181 ntBASIC22.96■■□□□ 1.27
SHANK1Q9Y566 ECEL1P2-201ENST00000461596 1295 ntBASIC22.96■■□□□ 1.27
SHANK1Q9Y566 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SHANK1Q9Y566 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
SHANK1Q9Y566 AL035685.1-201ENST00000636663 812 ntBASIC22.96■■□□□ 1.27
SHANK1Q9Y566 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.95■■□□□ 1.26
SHANK1Q9Y566 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK1Q9Y566 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
SHANK1Q9Y566 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.94■■□□□ 1.26
SHANK1Q9Y566 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.93■■□□□ 1.26
SHANK1Q9Y566 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
SHANK1Q9Y566 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK1Q9Y566 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SHANK1Q9Y566 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.92■■□□□ 1.26
SHANK1Q9Y566 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.92■■□□□ 1.26
SHANK1Q9Y566 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SHANK1Q9Y566 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SHANK1Q9Y566 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 AL592293.1-201ENST00000502889 1188 ntBASIC22.9■■□□□ 1.26
SHANK1Q9Y566 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SHANK1Q9Y566 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
SHANK1Q9Y566 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
SHANK1Q9Y566 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.89■■□□□ 1.25
SHANK1Q9Y566 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
SHANK1Q9Y566 AL592295.1-201ENST00000400984 884 ntBASIC22.89■■□□□ 1.25
SHANK1Q9Y566 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SHANK1Q9Y566 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
SHANK1Q9Y566 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
SHANK1Q9Y566 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
SHANK1Q9Y566 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SHANK1Q9Y566 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
SHANK1Q9Y566 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SHANK1Q9Y566 AC007029.1-201ENST00000604183 313 ntBASIC22.86■■□□□ 1.25
SHANK1Q9Y566 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SHANK1Q9Y566 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SHANK1Q9Y566 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
SHANK1Q9Y566 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
SHANK1Q9Y566 AC019069.1-201ENST00000610008 1333 ntBASIC22.85■■□□□ 1.25
SHANK1Q9Y566 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SHANK1Q9Y566 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.85■■□□□ 1.25
SHANK1Q9Y566 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.84■■□□□ 1.25
SHANK1Q9Y566 AC133552.2-201ENST00000619106 1032 ntBASIC22.84■■□□□ 1.25
SHANK1Q9Y566 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHANK1Q9Y566 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.84■■□□□ 1.25
SHANK1Q9Y566 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.84■■□□□ 1.25
SHANK1Q9Y566 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SHANK1Q9Y566 AC009831.1-201ENST00000580420 1582 ntBASIC22.84■■□□□ 1.25
SHANK1Q9Y566 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.83■■□□□ 1.25
SHANK1Q9Y566 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SHANK1Q9Y566 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
SHANK1Q9Y566 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
SHANK1Q9Y566 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.83■■□□□ 1.24
SHANK1Q9Y566 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.83■■□□□ 1.24
SHANK1Q9Y566 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHANK1Q9Y566 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.82■■□□□ 1.24
SHANK1Q9Y566 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.82■■□□□ 1.24
SHANK1Q9Y566 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
SHANK1Q9Y566 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
SHANK1Q9Y566 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHANK1Q9Y566 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHANK1Q9Y566 AL135925.1-201ENST00000605920 1701 ntBASIC22.81■■□□□ 1.24
SHANK1Q9Y566 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHANK1Q9Y566 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SHANK1Q9Y566 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 DUX4L18-201ENST00000553347 1267 ntBASIC22.79■■□□□ 1.24
SHANK1Q9Y566 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 AC009299.2-201ENST00000482477 511 ntBASIC22.79■■□□□ 1.24
SHANK1Q9Y566 AC126177.7-201ENST00000547904 679 ntBASIC22.79■■□□□ 1.24
SHANK1Q9Y566 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHANK1Q9Y566 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SHANK1Q9Y566 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms