Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
ZC3H4Q9UPT8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.08■■■□□ 2.57
ZC3H4Q9UPT8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
ZC3H4Q9UPT8 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.08■■■□□ 2.57
ZC3H4Q9UPT8 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.07■■■□□ 2.56
ZC3H4Q9UPT8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 AL161658.1-201ENST00000623641 1967 ntBASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
ZC3H4Q9UPT8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZC3H4Q9UPT8 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZC3H4Q9UPT8 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZC3H4Q9UPT8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZC3H4Q9UPT8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
ZC3H4Q9UPT8 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.04■■■□□ 2.56
ZC3H4Q9UPT8 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
ZC3H4Q9UPT8 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 MIR935-201ENST00000401179 91 ntBASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.03■■■□□ 2.56
ZC3H4Q9UPT8 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.02■■■□□ 2.56
ZC3H4Q9UPT8 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
ZC3H4Q9UPT8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
ZC3H4Q9UPT8 DUX4L9-201ENST00000449051 1259 ntBASIC31.01■■■□□ 2.56
ZC3H4Q9UPT8 AC010980.1-201ENST00000587192 1142 ntBASIC31.01■■■□□ 2.56
ZC3H4Q9UPT8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.01■■■□□ 2.56
ZC3H4Q9UPT8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
ZC3H4Q9UPT8 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
ZC3H4Q9UPT8 AC026202.3-201ENST00000600805 1127 ntBASIC31■■■□□ 2.55
ZC3H4Q9UPT8 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
ZC3H4Q9UPT8 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
ZC3H4Q9UPT8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
ZC3H4Q9UPT8 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.99■■■□□ 2.55
ZC3H4Q9UPT8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.99■■■□□ 2.55
ZC3H4Q9UPT8 BHLHE23-202ENST00000612929 1109 ntBASIC30.99■■■□□ 2.55
ZC3H4Q9UPT8 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.99■■■□□ 2.55
ZC3H4Q9UPT8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.98■■■□□ 2.55
ZC3H4Q9UPT8 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
ZC3H4Q9UPT8 YBX1P4-201ENST00000392794 808 ntBASIC30.98■■■□□ 2.55
ZC3H4Q9UPT8 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.98■■■□□ 2.55
ZC3H4Q9UPT8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
ZC3H4Q9UPT8 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC30.97■■■□□ 2.55
ZC3H4Q9UPT8 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
ZC3H4Q9UPT8 KRT8P33-201ENST00000508125 1423 ntBASIC30.97■■■□□ 2.55
ZC3H4Q9UPT8 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
ZC3H4Q9UPT8 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.97■■■□□ 2.55
ZC3H4Q9UPT8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ZC3H4Q9UPT8 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.96■■■□□ 2.55
ZC3H4Q9UPT8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
ZC3H4Q9UPT8 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.95■■■□□ 2.54
ZC3H4Q9UPT8 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
ZC3H4Q9UPT8 SMPD5-203ENST00000639008 1464 ntBASIC30.94■■■□□ 2.54
ZC3H4Q9UPT8 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
ZC3H4Q9UPT8 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
ZC3H4Q9UPT8 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
ZC3H4Q9UPT8 AC103834.1-201ENST00000520383 144 ntBASIC30.93■■■□□ 2.54
ZC3H4Q9UPT8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.92■■■□□ 2.54
ZC3H4Q9UPT8 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
ZC3H4Q9UPT8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
ZC3H4Q9UPT8 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
ZC3H4Q9UPT8 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
ZC3H4Q9UPT8 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
ZC3H4Q9UPT8 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.89■■■□□ 2.54
ZC3H4Q9UPT8 AL356441.2-201ENST00000443009 864 ntBASIC30.89■■■□□ 2.54
ZC3H4Q9UPT8 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.88■■■□□ 2.53
ZC3H4Q9UPT8 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
ZC3H4Q9UPT8 AC139795.1-202ENST00000500444 432 ntBASIC30.86■■■□□ 2.53
ZC3H4Q9UPT8 MIR4508-201ENST00000584178 70 ntBASIC30.86■■■□□ 2.53
ZC3H4Q9UPT8 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
ZC3H4Q9UPT8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.85■■■□□ 2.53
ZC3H4Q9UPT8 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
ZC3H4Q9UPT8 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
ZC3H4Q9UPT8 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
ZC3H4Q9UPT8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
ZC3H4Q9UPT8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
ZC3H4Q9UPT8 AC025884.2-201ENST00000553429 711 ntBASIC30.84■■■□□ 2.53
ZC3H4Q9UPT8 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
ZC3H4Q9UPT8 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
ZC3H4Q9UPT8 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
ZC3H4Q9UPT8 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
ZC3H4Q9UPT8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
ZC3H4Q9UPT8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
ZC3H4Q9UPT8 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.82■■■□□ 2.52
ZC3H4Q9UPT8 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
ZC3H4Q9UPT8 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 902.5 ms