Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.76■□□□□ 0.75
TRAV1-1A0A0B4J248 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.75■□□□□ 0.75
TRAV1-1A0A0B4J248 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
TRAV1-1A0A0B4J248 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV1-1A0A0B4J248 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV1-1A0A0B4J248 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV1-1A0A0B4J248 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TRAV1-1A0A0B4J248 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV1-1A0A0B4J248 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV1-1A0A0B4J248 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV1-1A0A0B4J248 AC100797.4-201ENST00000631653 1827 ntBASIC19.72■□□□□ 0.75
TRAV1-1A0A0B4J248 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TRAV1-1A0A0B4J248 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 AC006077.2-201ENST00000623591 457 ntBASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRAV1-1A0A0B4J248 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-1A0A0B4J248 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV1-1A0A0B4J248 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRAV1-1A0A0B4J248 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRAV1-1A0A0B4J248 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRAV1-1A0A0B4J248 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV1-1A0A0B4J248 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRAV1-1A0A0B4J248 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.68■□□□□ 0.74
TRAV1-1A0A0B4J248 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 DYNLL1-208ENST00000550178 581 ntBASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV1-1A0A0B4J248 AC127502.1-201ENST00000399971 1502 ntBASIC19.66■□□□□ 0.74
TRAV1-1A0A0B4J248 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-1A0A0B4J248 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV1-1A0A0B4J248 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
TRAV1-1A0A0B4J248 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.65■□□□□ 0.74
TRAV1-1A0A0B4J248 AC018358.1-201ENST00000631079 1402 ntBASIC19.65■□□□□ 0.74
TRAV1-1A0A0B4J248 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRAV1-1A0A0B4J248 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.64■□□□□ 0.74
TRAV1-1A0A0B4J248 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAV1-1A0A0B4J248 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV1-1A0A0B4J248 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV1-1A0A0B4J248 ERN1-208ENST00000606895 2068 ntBASIC19.64■□□□□ 0.73
TRAV1-1A0A0B4J248 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV1-1A0A0B4J248 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV1-1A0A0B4J248 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-1A0A0B4J248 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV1-1A0A0B4J248 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV1-1A0A0B4J248 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV1-1A0A0B4J248 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRAV1-1A0A0B4J248 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV1-1A0A0B4J248 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV1-1A0A0B4J248 AL031258.1-201ENST00000623562 325 ntBASIC19.58■□□□□ 0.72
TRAV1-1A0A0B4J248 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV1-1A0A0B4J248 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV1-1A0A0B4J248 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV1-1A0A0B4J248 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV1-1A0A0B4J248 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV1-1A0A0B4J248 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV1-1A0A0B4J248 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV1-1A0A0B4J248 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV1-1A0A0B4J248 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms