RNA–Protein interactions for RNA: snR38

snR38, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR38, Length 95 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR38snR38 FAP1P53971 965 aa5.56□□□□□ -1.52
snR38snR38 PRY3P47033 881 aa5.22□□□□□ -1.57
snR38snR38 HAA1Q12753 694 aaKnown RBP4.9□□□□□ -1.63
snR38snR38 MTC1P47018 478 aaKnown RBP4.88□□□□□ -1.63
snR38snR38 AAD16Q02895 342 aa4.78□□□□□ -1.64
snR38snR38 YCK3P39962 524 aa4.77□□□□□ -1.65
snR38snR38 PRI1P10363 409 aa4.65□□□□□ -1.67
snR38snR38 BUD31P25337 157 aaPredicted RBP4.38□□□□□ -1.71
snR38snR38 YGL015CP33199 130 aa4.36□□□□□ -1.71
snR38snR38 ISW2Q08773 1120 aa4.35□□□□□ -1.71
snR38snR38 TSR3Q12094 313 aaKnown RBP4.32□□□□□ -1.72
snR38snR38 MRPL32P25348 183 aa4.26□□□□□ -1.73
snR38snR38 RPG1P38249 964 aaKnown RBP4.25□□□□□ -1.73
snR38snR38 SIS1P25294 352 aaKnown RBP4.13□□□□□ -1.75
snR38snR38 UBP9P39967 754 aa3.99□□□□□ -1.77
snR38snR38 UBP10P53874 792 aaPredicted RBP3.88□□□□□ -1.79
snR38snR38 TIF4632P39936 914 aaKnown RBP3.8□□□□□ -1.8
snR38snR38 MAP2P38174 421 aaKnown RBP3.77□□□□□ -1.81
snR38snR38 REB1P21538 810 aa3.75□□□□□ -1.81
snR38snR38 CDC27P38042 758 aa3.73□□□□□ -1.81
snR38snR38 TGL3P40308 642 aa3.73□□□□□ -1.81
snR38snR38 RSE1Q04693 1361 aaKnown RBP3.7□□□□□ -1.82
snR38snR38 SLX5P32828 619 aaKnown RBP3.61□□□□□ -1.83
snR38snR38 DRS1P32892 752 aaKnown RBP3.61□□□□□ -1.83
snR38snR38 RPL17AP05740 184 aaKnown RBP3.6□□□□□ -1.83
snR38snR38 RPL17BP46990 184 aaKnown RBP3.6□□□□□ -1.83
snR38snR38 YJL171CP46992 396 aa3.59□□□□□ -1.83
snR38snR38 SCY1P53009 804 aa3.54□□□□□ -1.84
snR38snR38 DIP2Q12220 943 aaPredicted RBP3.51□□□□□ -1.85
snR38snR38 YBL029C-AQ3E756 94 aa3.51□□□□□ -1.85
snR38snR38 YKR023WP36119 530 aaKnown RBP3.5□□□□□ -1.85
snR38snR38 TFC8Q12308 588 aa3.46□□□□□ -1.86
snR38snR38 SPP1Q03012 353 aa3.45□□□□□ -1.86
snR38snR38 HOP09932 586 aa3.44□□□□□ -1.86
snR38snR38 VNX1P42839 908 aa3.44□□□□□ -1.86
snR38snR38 AIR2Q12476 344 aaKnown RBP3.43□□□□□ -1.86
snR38snR38 DCD1P06773 312 aa3.42□□□□□ -1.86
snR38snR38 MST1P07236 462 aa3.41□□□□□ -1.86
snR38snR38 YOR238WQ08634 303 aa3.41□□□□□ -1.86
snR38snR38 BMT6Q12291 365 aa3.4□□□□□ -1.87
snR38snR38 FKH1P40466 484 aa3.39□□□□□ -1.87
snR38snR38 RGA2Q06407 1009 aa3.38□□□□□ -1.87
snR38snR38 TIF11P38912 153 aaKnown RBP3.33□□□□□ -1.88
snR38snR38 WSC3Q12215 556 aa3.32□□□□□ -1.88
snR38snR38 SPT21P35209 758 aa3.31□□□□□ -1.88
snR38snR38 BCH2P36122 765 aa3.3□□□□□ -1.88
snR38snR38 LDB19Q12502 818 aa3.28□□□□□ -1.88
snR38snR38 NSR1P27476 414 aaKnown RBP RIP-Chip data3.27□□□□□ -1.89not detected
snR38snR38 GTT3P39996 337 aa3.25□□□□□ -1.89
snR38snR38 YAP5P40574 245 aa3.25□□□□□ -1.89
snR38snR38 BCK2P33306 851 aa3.22□□□□□ -1.89
snR38snR38 ULI1P43604 169 aa3.22□□□□□ -1.89
snR38snR38 RGA1P39083 1007 aa3.19□□□□□ -1.9
snR38snR38 IOC2Q12072 812 aa3.18□□□□□ -1.9
snR38snR38 BDF1P35817 686 aa3.17□□□□□ -1.9
snR38snR38 EAP1P36041 632 aaKnown RBP3.16□□□□□ -1.9
snR38snR38 EPS1P40557 701 aa3.16□□□□□ -1.9
snR38snR38 NCR1Q12200 1170 aa3.16□□□□□ -1.9
snR38snR38 TFG1P41895 735 aaPredicted RBP3.14□□□□□ -1.91
snR38snR38 RTG1P32607 177 aa3.13□□□□□ -1.91
snR38snR38 MSB4Q12317 492 aa3.13□□□□□ -1.91
snR38snR38 SEC61P32915 480 aa3.11□□□□□ -1.91
snR38snR38 CHL1P22516 861 aaPredicted RBP3.1□□□□□ -1.91
snR38snR38 AVT3P36062 692 aa3.09□□□□□ -1.91
snR38snR38 XDJ1P39102 459 aa3.07□□□□□ -1.92
snR38snR38 YNL035CP53962 389 aaKnown RBP3.07□□□□□ -1.92
snR38snR38 DPS1P04802 557 aaKnown RBP3.06□□□□□ -1.92
snR38snR38 BBC1P47068 1157 aa3.05□□□□□ -1.92
snR38snR38 SAP30P38429 201 aa3.03□□□□□ -1.92
snR38snR38 PRE3P38624 215 aa3.03□□□□□ -1.92
snR38snR38 TRP5P00931 707 aaKnown RBP3.02□□□□□ -1.93
snR38snR38 RIM101P33400 625 aa3.01□□□□□ -1.93
snR38snR38 VRP1P37370 817 aa3□□□□□ -1.93
snR38snR38 YDL129WQ07555 291 aa2.98□□□□□ -1.93
snR38snR38 PTP3P40048 928 aa2.97□□□□□ -1.93
snR38snR38 SET4P42948 560 aa2.97□□□□□ -1.93
snR38snR38 YOL036WQ08206 761 aa2.97□□□□□ -1.93
snR38snR38 YIL055CP40523 627 aaKnown RBP2.95□□□□□ -1.94
snR38snR38 JIP4Q03361 876 aa2.95□□□□□ -1.94
snR38snR38 PIB1Q06651 286 aa2.94□□□□□ -1.94
snR38snR38 AI2P03876 854 aa2.89□□□□□ -1.95
snR38snR38 SRC1Q03707 834 aa2.89□□□□□ -1.95
snR38snR38 ABP1P15891 592 aaKnown RBP2.88□□□□□ -1.95
snR38snR38 DAN4P47179 1161 aa2.88□□□□□ -1.95
snR38snR38 ELP4Q02884 456 aaKnown RBP2.88□□□□□ -1.95
snR38snR38 YPL062WQ02781 134 aa2.86□□□□□ -1.95
snR38snR38 RSM7P47150 247 aa2.85□□□□□ -1.95
snR38snR38 OXP1P28273 1286 aa2.83□□□□□ -1.96
snR38snR38 PTC4P38089 393 aa2.83□□□□□ -1.96
snR38snR38 HTA1P04911 132 aaKnown RBP2.82□□□□□ -1.96
snR38snR38 HTA2P04912 132 aa2.82□□□□□ -1.96
snR38snR38 SAM3Q08986 587 aa2.81□□□□□ -1.96
snR38snR38 VMA1P17255 1071 aaKnown RBP2.8□□□□□ -1.96
snR38snR38 YEL023CP39992 682 aa2.79□□□□□ -1.96
snR38snR38 TRK1P12685 1235 aa2.78□□□□□ -1.96
snR38snR38 GBP2P25555 427 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
snR38snR38 YMR1P47147 688 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
snR38snR38 SPT23P35210 1082 aa2.77□□□□□ -1.97
snR38snR38 DBP1P24784 617 aaKnown RBP2.76□□□□□ -1.97
snR38snR38 ARH1P48360 493 aa2.76□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms