RNA–Protein interactions for RNA: YPR001W

CIT3, Transcript of Dual specificity mitochondrial citrate and methylcitrate synthase, yeastyeast

Gene CIT3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CIT3YPR001W DRS1P32892 752 aaKnown RBP14.74□□□□□ -0.05
CIT3YPR001W TFA1P36100 482 aa13.54□□□□□ -0.24
CIT3YPR001W BFR2Q06631 534 aaKnown RBP13.37□□□□□ -0.27
CIT3YPR001W MTC1P47018 478 aaKnown RBP13.28□□□□□ -0.28
CIT3YPR001W RQC2Q12532 1038 aaKnown RBP12.97□□□□□ -0.33
CIT3YPR001W TAF7Q05021 590 aa12.29□□□□□ -0.44
CIT3YPR001W AVT3P36062 692 aa12.28□□□□□ -0.44
CIT3YPR001W DIP2Q12220 943 aaPredicted RBP12.07□□□□□ -0.48
CIT3YPR001W DMA1P38823 416 aa11.68□□□□□ -0.54
CIT3YPR001W LEO1P38439 464 aa11.42□□□□□ -0.58
CIT3YPR001W RSE1Q04693 1361 aaKnown RBP11.01□□□□□ -0.65
CIT3YPR001W PTP3P40048 928 aa10.91□□□□□ -0.66
CIT3YPR001W LEU3P08638 886 aa10.81□□□□□ -0.68
CIT3YPR001W SAS10Q12136 610 aaPredicted RBP10.61□□□□□ -0.71
CIT3YPR001W SSP1P38871 571 aa10.56□□□□□ -0.72
CIT3YPR001W RPL17AP05740 184 aaKnown RBP10.52□□□□□ -0.73
CIT3YPR001W RPL17BP46990 184 aaKnown RBP10.52□□□□□ -0.73
CIT3YPR001W DMA2P53924 522 aa10.49□□□□□ -0.73
CIT3YPR001W ISW2Q08773 1120 aa10.49□□□□□ -0.73
CIT3YPR001W RPN1P38764 993 aaKnown RBP10.4□□□□□ -0.74
CIT3YPR001W RIM101P33400 625 aa10.38□□□□□ -0.75
CIT3YPR001W RLF2Q12495 606 aa10.32□□□□□ -0.76
CIT3YPR001W RPG1P38249 964 aaKnown RBP10.3□□□□□ -0.76
CIT3YPR001W ABP1P15891 592 aaKnown RBP10.27□□□□□ -0.77
CIT3YPR001W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.27□□□□□ -0.77not detected
CIT3YPR001W REB1P21538 810 aa10.25□□□□□ -0.77
CIT3YPR001W SPT21P35209 758 aa10.23□□□□□ -0.77
CIT3YPR001W YAH1Q12184 172 aaKnown RBP10.15□□□□□ -0.78
CIT3YPR001W CKB1P43639 278 aa10.12□□□□□ -0.79
CIT3YPR001W OXP1P28273 1286 aa10.11□□□□□ -0.79
CIT3YPR001W IFH1P39520 1085 aa10.11□□□□□ -0.79
CIT3YPR001W AIM44Q99299 758 aa10.1□□□□□ -0.79
CIT3YPR001W YLR271WQ06152 274 aa10.08□□□□□ -0.8
CIT3YPR001W FAP1P53971 965 aa10.05□□□□□ -0.8
CIT3YPR001W MGA2P40578 1113 aa10.04□□□□□ -0.8
CIT3YPR001W SPB4P25808 606 aaPredicted RBP10□□□□□ -0.81
CIT3YPR001W YIL055CP40523 627 aaKnown RBP9.98□□□□□ -0.81
CIT3YPR001W NAP1P25293 417 aaKnown RBP9.92□□□□□ -0.82
CIT3YPR001W PRI1P10363 409 aa9.88□□□□□ -0.83
CIT3YPR001W CST9Q06032 482 aa9.85□□□□□ -0.83
CIT3YPR001W HGH1P48362 394 aaKnown RBP9.84□□□□□ -0.83
CIT3YPR001W VPS70P47161 811 aa9.82□□□□□ -0.84
CIT3YPR001W YPR148CQ06523 435 aa9.82□□□□□ -0.84
CIT3YPR001W RSM7P47150 247 aa9.8□□□□□ -0.84
CIT3YPR001W ORC1P54784 914 aaPredicted RBP9.8□□□□□ -0.84
CIT3YPR001W KIN1P13185 1064 aa9.79□□□□□ -0.84
CIT3YPR001W SET1P38827 1080 aaKnown RBP9.79□□□□□ -0.84
CIT3YPR001W YML020WQ03722 664 aa9.78□□□□□ -0.84
CIT3YPR001W IOC4Q04213 475 aa9.78□□□□□ -0.84
CIT3YPR001W DSF2P38213 736 aa9.73□□□□□ -0.85
CIT3YPR001W YNR021WP53723 404 aaKnown RBP9.73□□□□□ -0.85
CIT3YPR001W NOP8Q08287 484 aaPredicted RBP9.72□□□□□ -0.85
CIT3YPR001W RAM2P29703 316 aa9.67□□□□□ -0.86
CIT3YPR001W AAD16Q02895 342 aa9.67□□□□□ -0.86
CIT3YPR001W PSD2P53037 1138 aaKnown RBP9.66□□□□□ -0.86
CIT3YPR001W PBS2P08018 668 aa9.64□□□□□ -0.87
CIT3YPR001W AIM7Q12156 149 aa9.64□□□□□ -0.87
CIT3YPR001W SLX8P40072 274 aa9.63□□□□□ -0.87
CIT3YPR001W GLC3P32775 704 aa9.6□□□□□ -0.87
CIT3YPR001W SSA1P10591 642 aaKnown RBP9.59□□□□□ -0.87
CIT3YPR001W YKR023WP36119 530 aaKnown RBP9.59□□□□□ -0.87
CIT3YPR001W GEF1P37020 779 aa9.59□□□□□ -0.87
CIT3YPR001W GUA1P38625 525 aaKnown RBP9.55□□□□□ -0.88
CIT3YPR001W AI2P03876 854 aa9.53□□□□□ -0.88
CIT3YPR001W NOP7P53261 605 aaKnown RBP9.53□□□□□ -0.88
CIT3YPR001W MAM3Q12296 706 aa9.51□□□□□ -0.89
CIT3YPR001W SUB2Q07478 446 aaKnown RBP9.49□□□□□ -0.89
CIT3YPR001W HPC2Q01448 625 aa9.48□□□□□ -0.89
CIT3YPR001W IES2P40154 320 aa9.47□□□□□ -0.89
CIT3YPR001W MAK21Q12176 1025 aaKnown RBP9.47□□□□□ -0.89
CIT3YPR001W TSR3Q12094 313 aaKnown RBP9.45□□□□□ -0.9
CIT3YPR001W PRY3P47033 881 aa9.44□□□□□ -0.9
CIT3YPR001W DIT2P21595 489 aa9.42□□□□□ -0.9
CIT3YPR001W NUP42P49686 430 aaKnown RBP9.42□□□□□ -0.9
CIT3YPR001W TFB3Q03290 321 aa9.41□□□□□ -0.9
CIT3YPR001W MAK11P20484 414 aaKnown RBP9.4□□□□□ -0.91
CIT3YPR001W TFC8Q12308 588 aa9.4□□□□□ -0.91
CIT3YPR001W HOP09932 586 aa9.39□□□□□ -0.91
CIT3YPR001W BBC1P47068 1157 aa9.39□□□□□ -0.91
CIT3YPR001W MRX12P47084 519 aa9.39□□□□□ -0.91
CIT3YPR001W RCR1P38212 213 aa9.38□□□□□ -0.91
CIT3YPR001W SNU71P53207 620 aaKnown RBP9.38□□□□□ -0.91
CIT3YPR001W ATF2P53296 535 aa9.38□□□□□ -0.91
CIT3YPR001W SLD2P34252 453 aa9.37□□□□□ -0.91
CIT3YPR001W BRL1P38770 471 aa9.35□□□□□ -0.91
CIT3YPR001W REF2P42073 533 aaPredicted RBP9.35□□□□□ -0.91
CIT3YPR001W SSA4P22202 642 aaKnown RBP9.32□□□□□ -0.92
CIT3YPR001W MRM1P25270 412 aa9.32□□□□□ -0.92
CIT3YPR001W PKC1P24583 1151 aa9.28□□□□□ -0.92
CIT3YPR001W MET10P39692 1035 aa9.28□□□□□ -0.92
CIT3YPR001W RTG3P38165 486 aa9.28□□□□□ -0.92
CIT3YPR001W DCD1P06773 312 aa9.27□□□□□ -0.93
CIT3YPR001W BIM1P40013 344 aa9.27□□□□□ -0.93
CIT3YPR001W COQ8P27697 501 aa9.26□□□□□ -0.93
CIT3YPR001W PAM1P37304 830 aaKnown RBP9.25□□□□□ -0.93
CIT3YPR001W NOP53Q12080 455 aaKnown RBP9.25□□□□□ -0.93
CIT3YPR001W GLN1P32288 370 aaKnown RBP9.24□□□□□ -0.93
CIT3YPR001W TOP1P04786 769 aa9.23□□□□□ -0.93
CIT3YPR001W SSA2P10592 639 aaKnown RBP9.23□□□□□ -0.93
CIT3YPR001W YJL007CP47080 104 aa9.23□□□□□ -0.93
Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms