RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C MTC1P47018 478 aaKnown RBP16.33■□□□□ 0.2
CUP9YPL177C DRS1P32892 752 aaKnown RBP14.93□□□□□ -0.02
CUP9YPL177C FAP1P53971 965 aa14.92□□□□□ -0.02
CUP9YPL177C PRY3P47033 881 aa14.06□□□□□ -0.16
CUP9YPL177C PRI1P10363 409 aa13.92□□□□□ -0.18
CUP9YPL177C AAD16Q02895 342 aa13.85□□□□□ -0.19
CUP9YPL177C ISW2Q08773 1120 aa13.55□□□□□ -0.24
CUP9YPL177C RPG1P38249 964 aaKnown RBP13.43□□□□□ -0.26
CUP9YPL177C YCK3P39962 524 aa13.38□□□□□ -0.27
CUP9YPL177C DIP2Q12220 943 aaPredicted RBP13.2□□□□□ -0.3
CUP9YPL177C HAA1Q12753 694 aaKnown RBP13.19□□□□□ -0.3
CUP9YPL177C TSR3Q12094 313 aaKnown RBP13.12□□□□□ -0.31
CUP9YPL177C RSE1Q04693 1361 aaKnown RBP12.83□□□□□ -0.36
CUP9YPL177C AVT3P36062 692 aa12.69□□□□□ -0.38
CUP9YPL177C MRPL32P25348 183 aa12.58□□□□□ -0.4
CUP9YPL177C RPL17AP05740 184 aaKnown RBP12.45□□□□□ -0.42
CUP9YPL177C RPL17BP46990 184 aaKnown RBP12.45□□□□□ -0.42
CUP9YPL177C REB1P21538 810 aa12.39□□□□□ -0.43
CUP9YPL177C BFR2Q06631 534 aaKnown RBP12.27□□□□□ -0.45
CUP9YPL177C YGL015CP33199 130 aa12.15□□□□□ -0.46
CUP9YPL177C SPT21P35209 758 aa11.96□□□□□ -0.49
CUP9YPL177C CDC27P38042 758 aa11.96□□□□□ -0.49
CUP9YPL177C YKR023WP36119 530 aaKnown RBP11.87□□□□□ -0.51
CUP9YPL177C UBP10P53874 792 aaPredicted RBP11.66□□□□□ -0.54
CUP9YPL177C TFC8Q12308 588 aa11.61□□□□□ -0.55
CUP9YPL177C MAP2P38174 421 aaKnown RBP11.6□□□□□ -0.55
CUP9YPL177C HOP09932 586 aa11.58□□□□□ -0.56
CUP9YPL177C DCD1P06773 312 aa11.54□□□□□ -0.56
CUP9YPL177C RIM101P33400 625 aa11.45□□□□□ -0.58
CUP9YPL177C SCY1P53009 804 aa11.31□□□□□ -0.6
CUP9YPL177C BUD31P25337 157 aaPredicted RBP11.3□□□□□ -0.6
CUP9YPL177C BCH2P36122 765 aa11.21□□□□□ -0.61
CUP9YPL177C SLX5P32828 619 aaKnown RBP11.17□□□□□ -0.62
CUP9YPL177C TIF4632P39936 914 aaKnown RBP11.13□□□□□ -0.63
CUP9YPL177C TGL3P40308 642 aa11.11□□□□□ -0.63
CUP9YPL177C OXP1P28273 1286 aa11.06□□□□□ -0.64
CUP9YPL177C EPS1P40557 701 aa10.92□□□□□ -0.66
CUP9YPL177C BDF1P35817 686 aa10.87□□□□□ -0.67
CUP9YPL177C PTP3P40048 928 aa10.84□□□□□ -0.67
CUP9YPL177C YIL055CP40523 627 aaKnown RBP10.82□□□□□ -0.68
CUP9YPL177C UBP9P39967 754 aa10.81□□□□□ -0.68
CUP9YPL177C RSM7P47150 247 aa10.71□□□□□ -0.69
CUP9YPL177C SIS1P25294 352 aaKnown RBP10.67□□□□□ -0.7
CUP9YPL177C MST1P07236 462 aa10.65□□□□□ -0.7
CUP9YPL177C AI2P03876 854 aa10.64□□□□□ -0.71
CUP9YPL177C YAH1Q12184 172 aaKnown RBP10.64□□□□□ -0.71
CUP9YPL177C BBC1P47068 1157 aa10.63□□□□□ -0.71
CUP9YPL177C TFA1P36100 482 aa10.61□□□□□ -0.71
CUP9YPL177C NSR1P27476 414 aaKnown RBP RIP-Chip data10.59□□□□□ -0.71not detected
CUP9YPL177C YOR238WQ08634 303 aa10.56□□□□□ -0.72
CUP9YPL177C YLR271WQ06152 274 aa10.5□□□□□ -0.73
CUP9YPL177C YBL029C-AQ3E756 94 aa10.49□□□□□ -0.73
CUP9YPL177C YAP5P40574 245 aa10.46□□□□□ -0.73
CUP9YPL177C PSD2P53037 1138 aaKnown RBP10.4□□□□□ -0.74
CUP9YPL177C VNX1P42839 908 aa10.37□□□□□ -0.75
CUP9YPL177C SSP1P38871 571 aa10.27□□□□□ -0.77
CUP9YPL177C WSC3Q12215 556 aa10.26□□□□□ -0.77
CUP9YPL177C SPP1Q03012 353 aa10.25□□□□□ -0.77
CUP9YPL177C MRM1P25270 412 aa10.23□□□□□ -0.77
CUP9YPL177C ARP8Q12386 881 aaKnown RBP RIP-Chip data10.22□□□□□ -0.77not detected
CUP9YPL177C GTT3P39996 337 aa10.2□□□□□ -0.78
CUP9YPL177C TIF11P38912 153 aaKnown RBP10.17□□□□□ -0.78
CUP9YPL177C PIB1Q06651 286 aa10.16□□□□□ -0.78
CUP9YPL177C CST9Q06032 482 aa10.11□□□□□ -0.79
CUP9YPL177C FKH1P40466 484 aa10.1□□□□□ -0.79
CUP9YPL177C AIR2Q12476 344 aaKnown RBP10.09□□□□□ -0.79
CUP9YPL177C MGA2P40578 1113 aa10.06□□□□□ -0.8
CUP9YPL177C VPS29P38759 282 aa10.04□□□□□ -0.8
CUP9YPL177C ULI1P43604 169 aa10.02□□□□□ -0.81
CUP9YPL177C YMR1P47147 688 aaKnown RBP RIP-Chip data10.02□□□□□ -0.81not detected
CUP9YPL177C IOC2Q12072 812 aa10.02□□□□□ -0.81
CUP9YPL177C LDB19Q12502 818 aa10□□□□□ -0.81
CUP9YPL177C MSB4Q12317 492 aa9.99□□□□□ -0.81
CUP9YPL177C DBP1P24784 617 aaKnown RBP9.98□□□□□ -0.81
CUP9YPL177C RTG3P38165 486 aa9.98□□□□□ -0.81
CUP9YPL177C STS1P38637 319 aa9.95□□□□□ -0.82
CUP9YPL177C YOL036WQ08206 761 aa9.95□□□□□ -0.82
CUP9YPL177C YFR006WP43590 535 aa9.94□□□□□ -0.82
CUP9YPL177C YJL171CP46992 396 aa9.92□□□□□ -0.82
CUP9YPL177C VMA1P17255 1071 aaKnown RBP9.91□□□□□ -0.82
CUP9YPL177C EAP1P36041 632 aaKnown RBP9.91□□□□□ -0.82
CUP9YPL177C RCR1P38212 213 aa9.91□□□□□ -0.82
CUP9YPL177C SET4P42948 560 aa9.9□□□□□ -0.82
CUP9YPL177C SAM3Q08986 587 aa9.88□□□□□ -0.83
CUP9YPL177C TRP5P00931 707 aaKnown RBP9.86□□□□□ -0.83
CUP9YPL177C BMT6Q12291 365 aa9.82□□□□□ -0.84
CUP9YPL177C RTG1P32607 177 aa9.81□□□□□ -0.84
CUP9YPL177C YNL035CP53962 389 aaKnown RBP9.76□□□□□ -0.85
CUP9YPL177C SEC61P32915 480 aa9.73□□□□□ -0.85
CUP9YPL177C NCR1Q12200 1170 aa9.73□□□□□ -0.85
CUP9YPL177C ABP1P15891 592 aaKnown RBP9.68□□□□□ -0.86
CUP9YPL177C GYP5Q12344 894 aa9.68□□□□□ -0.86
CUP9YPL177C DAN4P47179 1161 aa9.66□□□□□ -0.86
CUP9YPL177C JIP4Q03361 876 aa9.62□□□□□ -0.87
CUP9YPL177C HTA1P04911 132 aaKnown RBP9.6□□□□□ -0.87
CUP9YPL177C HTA2P04912 132 aa9.6□□□□□ -0.87
CUP9YPL177C DCW1P36091 449 aa9.6□□□□□ -0.87
CUP9YPL177C RAM2P29703 316 aa9.57□□□□□ -0.88
CUP9YPL177C TFG1P41895 735 aaPredicted RBP9.56□□□□□ -0.88
CUP9YPL177C YEL023CP39992 682 aa9.55□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 37.8 ms