RNA–Protein interactions for RNA: YPL002C

SNF8, Transcript of Component of the ESCRT-II complex, yeastyeast

Gene SNF8, Length 702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNF8YPL002C MTC1P47018 478 aaKnown RBP15.89■□□□□ 0.13
SNF8YPL002C DRS1P32892 752 aaKnown RBP14.85□□□□□ -0.03
SNF8YPL002C FAP1P53971 965 aa14.26□□□□□ -0.13
SNF8YPL002C PRY3P47033 881 aa13.41□□□□□ -0.26
SNF8YPL002C PRI1P10363 409 aa13.38□□□□□ -0.27
SNF8YPL002C AAD16Q02895 342 aa13.28□□□□□ -0.28
SNF8YPL002C ISW2Q08773 1120 aa13.13□□□□□ -0.31
SNF8YPL002C RPG1P38249 964 aaKnown RBP13.02□□□□□ -0.33
SNF8YPL002C DIP2Q12220 943 aaPredicted RBP13.01□□□□□ -0.33
SNF8YPL002C YCK3P39962 524 aa12.73□□□□□ -0.37
SNF8YPL002C TSR3Q12094 313 aaKnown RBP12.66□□□□□ -0.38
SNF8YPL002C AVT3P36062 692 aa12.56□□□□□ -0.4
SNF8YPL002C RSE1Q04693 1361 aaKnown RBP12.56□□□□□ -0.4
SNF8YPL002C HAA1Q12753 694 aaKnown RBP12.55□□□□□ -0.4
SNF8YPL002C BFR2Q06631 534 aaKnown RBP12.34□□□□□ -0.43
SNF8YPL002C RPL17AP05740 184 aaKnown RBP12.18□□□□□ -0.46
SNF8YPL002C RPL17BP46990 184 aaKnown RBP12.18□□□□□ -0.46
SNF8YPL002C MRPL32P25348 183 aa12.12□□□□□ -0.47
SNF8YPL002C REB1P21538 810 aa12.1□□□□□ -0.47
SNF8YPL002C SPT21P35209 758 aa11.68□□□□□ -0.54
SNF8YPL002C YGL015CP33199 130 aa11.61□□□□□ -0.55
SNF8YPL002C CDC27P38042 758 aa11.58□□□□□ -0.56
SNF8YPL002C YKR023WP36119 530 aaKnown RBP11.54□□□□□ -0.56
SNF8YPL002C HOP09932 586 aa11.31□□□□□ -0.6
SNF8YPL002C TFC8Q12308 588 aa11.3□□□□□ -0.6
SNF8YPL002C DCD1P06773 312 aa11.28□□□□□ -0.6
SNF8YPL002C RIM101P33400 625 aa11.26□□□□□ -0.61
SNF8YPL002C MAP2P38174 421 aaKnown RBP11.2□□□□□ -0.62
SNF8YPL002C UBP10P53874 792 aaPredicted RBP11.2□□□□□ -0.62
SNF8YPL002C SCY1P53009 804 aa10.97□□□□□ -0.65
SNF8YPL002C BCH2P36122 765 aa10.93□□□□□ -0.66
SNF8YPL002C OXP1P28273 1286 aa10.9□□□□□ -0.66
SNF8YPL002C TFA1P36100 482 aa10.86□□□□□ -0.67
SNF8YPL002C SLX5P32828 619 aaKnown RBP10.81□□□□□ -0.68
SNF8YPL002C TIF4632P39936 914 aaKnown RBP10.71□□□□□ -0.69
SNF8YPL002C PTP3P40048 928 aa10.7□□□□□ -0.7
SNF8YPL002C YIL055CP40523 627 aaKnown RBP10.68□□□□□ -0.7
SNF8YPL002C TGL3P40308 642 aa10.67□□□□□ -0.7
SNF8YPL002C EPS1P40557 701 aa10.66□□□□□ -0.7
SNF8YPL002C BUD31P25337 157 aaPredicted RBP10.65□□□□□ -0.7
SNF8YPL002C BDF1P35817 686 aa10.62□□□□□ -0.71
SNF8YPL002C YAH1Q12184 172 aaKnown RBP10.57□□□□□ -0.72
SNF8YPL002C RSM7P47150 247 aa10.55□□□□□ -0.72
SNF8YPL002C AI2P03876 854 aa10.46□□□□□ -0.73
SNF8YPL002C BBC1P47068 1157 aa10.43□□□□□ -0.74
SNF8YPL002C YLR271WQ06152 274 aa10.4□□□□□ -0.74
SNF8YPL002C UBP9P39967 754 aa10.32□□□□□ -0.76
SNF8YPL002C SSP1P38871 571 aa10.26□□□□□ -0.77
SNF8YPL002C MST1P07236 462 aa10.25□□□□□ -0.77
SNF8YPL002C PSD2P53037 1138 aaKnown RBP10.24□□□□□ -0.77
SNF8YPL002C NSR1P27476 414 aaKnown RBP RIP-Chip data10.22□□□□□ -0.77not detected
SNF8YPL002C YOR238WQ08634 303 aa10.21□□□□□ -0.77
SNF8YPL002C ARP8Q12386 881 aaKnown RBP RIP-Chip data10.16□□□□□ -0.78not detected
SNF8YPL002C YAP5P40574 245 aa10.15□□□□□ -0.78
SNF8YPL002C SIS1P25294 352 aaKnown RBP10.13□□□□□ -0.79
SNF8YPL002C YBL029C-AQ3E756 94 aa10.1□□□□□ -0.79
SNF8YPL002C MRM1P25270 412 aa10.09□□□□□ -0.79
SNF8YPL002C CST9Q06032 482 aa10.05□□□□□ -0.8
SNF8YPL002C MGA2P40578 1113 aa9.99□□□□□ -0.81
SNF8YPL002C VNX1P42839 908 aa9.98□□□□□ -0.81
SNF8YPL002C PIB1Q06651 286 aa9.96□□□□□ -0.82
SNF8YPL002C WSC3Q12215 556 aa9.95□□□□□ -0.82
SNF8YPL002C GTT3P39996 337 aa9.91□□□□□ -0.82
SNF8YPL002C VPS29P38759 282 aa9.88□□□□□ -0.83
SNF8YPL002C SPP1Q03012 353 aa9.87□□□□□ -0.83
SNF8YPL002C RTG3P38165 486 aa9.85□□□□□ -0.83
SNF8YPL002C YMR1P47147 688 aaKnown RBP RIP-Chip data9.82□□□□□ -0.84not detected
SNF8YPL002C RCR1P38212 213 aa9.81□□□□□ -0.84
SNF8YPL002C DBP1P24784 617 aaKnown RBP9.8□□□□□ -0.84
SNF8YPL002C TIF11P38912 153 aaKnown RBP9.8□□□□□ -0.84
SNF8YPL002C YFR006WP43590 535 aa9.79□□□□□ -0.84
SNF8YPL002C STS1P38637 319 aa9.77□□□□□ -0.85
SNF8YPL002C ULI1P43604 169 aa9.69□□□□□ -0.86
SNF8YPL002C VMA1P17255 1071 aaKnown RBP9.68□□□□□ -0.86
SNF8YPL002C YOL036WQ08206 761 aa9.68□□□□□ -0.86
SNF8YPL002C FKH1P40466 484 aa9.67□□□□□ -0.86
SNF8YPL002C SET4P42948 560 aa9.67□□□□□ -0.86
SNF8YPL002C IOC2Q12072 812 aa9.67□□□□□ -0.86
SNF8YPL002C MSB4Q12317 492 aa9.67□□□□□ -0.86
SNF8YPL002C AIR2Q12476 344 aaKnown RBP9.66□□□□□ -0.86
SNF8YPL002C LDB19Q12502 818 aa9.66□□□□□ -0.86
SNF8YPL002C SAM3Q08986 587 aa9.62□□□□□ -0.87
SNF8YPL002C EAP1P36041 632 aaKnown RBP9.59□□□□□ -0.87
SNF8YPL002C TRP5P00931 707 aaKnown RBP9.57□□□□□ -0.88
SNF8YPL002C RAM2P29703 316 aa9.52□□□□□ -0.89
SNF8YPL002C YJL171CP46992 396 aa9.52□□□□□ -0.89
SNF8YPL002C RTG1P32607 177 aa9.49□□□□□ -0.89
SNF8YPL002C GYP5Q12344 894 aa9.48□□□□□ -0.89
SNF8YPL002C MAK11P20484 414 aaKnown RBP9.45□□□□□ -0.9
SNF8YPL002C YNL035CP53962 389 aaKnown RBP9.45□□□□□ -0.9
SNF8YPL002C BMT6Q12291 365 aa9.43□□□□□ -0.9
SNF8YPL002C DCW1P36091 449 aa9.42□□□□□ -0.9
SNF8YPL002C ABP1P15891 592 aaKnown RBP9.41□□□□□ -0.9
SNF8YPL002C SEC61P32915 480 aa9.41□□□□□ -0.9
SNF8YPL002C NCR1Q12200 1170 aa9.41□□□□□ -0.9
SNF8YPL002C MIF2P35201 549 aa9.4□□□□□ -0.9
SNF8YPL002C HTA1P04911 132 aaKnown RBP9.39□□□□□ -0.91
SNF8YPL002C HTA2P04912 132 aa9.39□□□□□ -0.91
SNF8YPL002C EDS1P38073 919 aa9.39□□□□□ -0.91
SNF8YPL002C DAN4P47179 1161 aa9.37□□□□□ -0.91
Retrieved 100 of 5,963 RNA–protein pairs in 800.8 ms