RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeastyeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DDR48YMR173W MTC1P47018 478 aaKnown RBP14.47□□□□□ -0.09
DDR48YMR173W FAP1P53971 965 aa13.59□□□□□ -0.23
DDR48YMR173W DRS1P32892 752 aaKnown RBP12.98□□□□□ -0.33
DDR48YMR173W PRY3P47033 881 aa12.79□□□□□ -0.36
DDR48YMR173W PRI1P10363 409 aa12.5□□□□□ -0.41
DDR48YMR173W AAD16Q02895 342 aa12.49□□□□□ -0.41
DDR48YMR173W YCK3P39962 524 aa12.11□□□□□ -0.47
DDR48YMR173W ISW2Q08773 1120 aa12.09□□□□□ -0.47
DDR48YMR173W RPG1P38249 964 aaKnown RBP11.99□□□□□ -0.49
DDR48YMR173W HAA1Q12753 694 aaKnown RBP11.98□□□□□ -0.49
DDR48YMR173W TSR3Q12094 313 aaKnown RBP11.78□□□□□ -0.52
DDR48YMR173W DIP2Q12220 943 aaPredicted RBP11.58□□□□□ -0.56
DDR48YMR173W RSE1Q04693 1361 aaKnown RBP11.33□□□□□ -0.6
DDR48YMR173W MRPL32P25348 183 aa11.31□□□□□ -0.6
DDR48YMR173W AVT3P36062 692 aa11.02□□□□□ -0.65
DDR48YMR173W RPL17AP05740 184 aaKnown RBP11.01□□□□□ -0.65
DDR48YMR173W RPL17BP46990 184 aaKnown RBP11.01□□□□□ -0.65
DDR48YMR173W YGL015CP33199 130 aa11□□□□□ -0.65
DDR48YMR173W REB1P21538 810 aa10.99□□□□□ -0.65
DDR48YMR173W CDC27P38042 758 aa10.67□□□□□ -0.7
DDR48YMR173W BFR2Q06631 534 aaKnown RBP10.54□□□□□ -0.72
DDR48YMR173W SPT21P35209 758 aa10.52□□□□□ -0.73
DDR48YMR173W YKR023WP36119 530 aaKnown RBP10.52□□□□□ -0.73
DDR48YMR173W UBP10P53874 792 aaPredicted RBP10.43□□□□□ -0.74
DDR48YMR173W MAP2P38174 421 aaKnown RBP10.39□□□□□ -0.75
DDR48YMR173W BUD31P25337 157 aaPredicted RBP10.31□□□□□ -0.76
DDR48YMR173W HOP09932 586 aa10.3□□□□□ -0.76
DDR48YMR173W TFC8Q12308 588 aa10.3□□□□□ -0.76
DDR48YMR173W DCD1P06773 312 aa10.27□□□□□ -0.77
DDR48YMR173W SCY1P53009 804 aa10.09□□□□□ -0.79
DDR48YMR173W RIM101P33400 625 aa10.04□□□□□ -0.8
DDR48YMR173W TIF4632P39936 914 aaKnown RBP9.99□□□□□ -0.81
DDR48YMR173W SLX5P32828 619 aaKnown RBP9.98□□□□□ -0.81
DDR48YMR173W TGL3P40308 642 aa9.97□□□□□ -0.81
DDR48YMR173W BCH2P36122 765 aa9.95□□□□□ -0.82
DDR48YMR173W UBP9P39967 754 aa9.81□□□□□ -0.84
DDR48YMR173W SIS1P25294 352 aaKnown RBP9.75□□□□□ -0.85
DDR48YMR173W OXP1P28273 1286 aa9.69□□□□□ -0.86
DDR48YMR173W EPS1P40557 701 aa9.65□□□□□ -0.86
DDR48YMR173W BDF1P35817 686 aa9.63□□□□□ -0.87
DDR48YMR173W PTP3P40048 928 aa9.53□□□□□ -0.88
DDR48YMR173W YIL055CP40523 627 aaKnown RBP9.52□□□□□ -0.89
DDR48YMR173W MST1P07236 462 aa9.51□□□□□ -0.89
DDR48YMR173W YOR238WQ08634 303 aa9.43□□□□□ -0.9
DDR48YMR173W YBL029C-AQ3E756 94 aa9.42□□□□□ -0.9
DDR48YMR173W NSR1P27476 414 aaKnown RBP RIP-Chip data9.39□□□□□ -0.91not detected
DDR48YMR173W RSM7P47150 247 aa9.39□□□□□ -0.91
DDR48YMR173W BBC1P47068 1157 aa9.37□□□□□ -0.91
DDR48YMR173W AI2P03876 854 aa9.35□□□□□ -0.91
DDR48YMR173W YAP5P40574 245 aa9.3□□□□□ -0.92
DDR48YMR173W VNX1P42839 908 aa9.3□□□□□ -0.92
DDR48YMR173W YAH1Q12184 172 aaKnown RBP9.3□□□□□ -0.92
DDR48YMR173W SPP1Q03012 353 aa9.21□□□□□ -0.94
DDR48YMR173W WSC3Q12215 556 aa9.19□□□□□ -0.94
DDR48YMR173W YLR271WQ06152 274 aa9.15□□□□□ -0.94
DDR48YMR173W TIF11P38912 153 aaKnown RBP9.09□□□□□ -0.95
DDR48YMR173W GTT3P39996 337 aa9.09□□□□□ -0.95
DDR48YMR173W TFA1P36100 482 aa9.08□□□□□ -0.96
DDR48YMR173W PSD2P53037 1138 aaKnown RBP9.08□□□□□ -0.96
DDR48YMR173W AIR2Q12476 344 aaKnown RBP9.07□□□□□ -0.96
DDR48YMR173W FKH1P40466 484 aa9.04□□□□□ -0.96
DDR48YMR173W PIB1Q06651 286 aa9.01□□□□□ -0.97
DDR48YMR173W MRM1P25270 412 aa8.98□□□□□ -0.97
DDR48YMR173W YJL171CP46992 396 aa8.98□□□□□ -0.97
DDR48YMR173W ULI1P43604 169 aa8.95□□□□□ -0.98
DDR48YMR173W IOC2Q12072 812 aa8.95□□□□□ -0.98
DDR48YMR173W LDB19Q12502 818 aa8.95□□□□□ -0.98
DDR48YMR173W SSP1P38871 571 aa8.88□□□□□ -0.99
DDR48YMR173W MSB4Q12317 492 aa8.87□□□□□ -0.99
DDR48YMR173W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.87□□□□□ -0.99not detected
DDR48YMR173W BMT6Q12291 365 aa8.84□□□□□ -0.99
DDR48YMR173W EAP1P36041 632 aaKnown RBP8.83□□□□□ -1
DDR48YMR173W VPS29P38759 282 aa8.81□□□□□ -1
DDR48YMR173W YMR1P47147 688 aaKnown RBP RIP-Chip data8.81□□□□□ -1not detected
DDR48YMR173W YOL036WQ08206 761 aa8.81□□□□□ -1
DDR48YMR173W SET4P42948 560 aa8.8□□□□□ -1
DDR48YMR173W CST9Q06032 482 aa8.8□□□□□ -1
DDR48YMR173W DBP1P24784 617 aaKnown RBP8.79□□□□□ -1
DDR48YMR173W TRP5P00931 707 aaKnown RBP8.77□□□□□ -1.01
DDR48YMR173W RTG1P32607 177 aa8.76□□□□□ -1.01
DDR48YMR173W RTG3P38165 486 aa8.76□□□□□ -1.01
DDR48YMR173W YFR006WP43590 535 aa8.75□□□□□ -1.01
DDR48YMR173W MGA2P40578 1113 aa8.74□□□□□ -1.01
DDR48YMR173W VMA1P17255 1071 aaKnown RBP8.73□□□□□ -1.01
DDR48YMR173W STS1P38637 319 aa8.73□□□□□ -1.01
DDR48YMR173W NCR1Q12200 1170 aa8.72□□□□□ -1.01
DDR48YMR173W SAM3Q08986 587 aa8.7□□□□□ -1.02
DDR48YMR173W YNL035CP53962 389 aaKnown RBP8.69□□□□□ -1.02
DDR48YMR173W SEC61P32915 480 aa8.67□□□□□ -1.02
DDR48YMR173W RCR1P38212 213 aa8.65□□□□□ -1.02
DDR48YMR173W DAN4P47179 1161 aa8.57□□□□□ -1.04
DDR48YMR173W TFG1P41895 735 aaPredicted RBP8.55□□□□□ -1.04
DDR48YMR173W JIP4Q03361 876 aa8.54□□□□□ -1.04
DDR48YMR173W GYP5Q12344 894 aa8.54□□□□□ -1.04
DDR48YMR173W ABP1P15891 592 aaKnown RBP8.53□□□□□ -1.04
DDR48YMR173W SAP30P38429 201 aa8.51□□□□□ -1.05
DDR48YMR173W HTA1P04911 132 aaKnown RBP8.49□□□□□ -1.05
DDR48YMR173W HTA2P04912 132 aa8.49□□□□□ -1.05
DDR48YMR173W DCW1P36091 449 aa8.48□□□□□ -1.05
DDR48YMR173W YDL129WQ07555 291 aa8.48□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms