RNA–Protein interactions for RNA: YMR025W

CSI1, Transcript of Subunit of the Cop9 signalosome, yeastyeast

Gene CSI1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CSI1YMR025W MTC1P47018 478 aaKnown RBP19.12■□□□□ 0.65
CSI1YMR025W DRS1P32892 752 aaKnown RBP17.79■□□□□ 0.44
CSI1YMR025W FAP1P53971 965 aa17.28■□□□□ 0.36
CSI1YMR025W PRY3P47033 881 aa16.25■□□□□ 0.19
CSI1YMR025W PRI1P10363 409 aa16.15■□□□□ 0.18
CSI1YMR025W AAD16Q02895 342 aa16.06■□□□□ 0.16
CSI1YMR025W ISW2Q08773 1120 aa15.85■□□□□ 0.13
CSI1YMR025W RPG1P38249 964 aaKnown RBP15.7■□□□□ 0.1
CSI1YMR025W DIP2Q12220 943 aaPredicted RBP15.62■□□□□ 0.09
CSI1YMR025W YCK3P39962 524 aa15.34■□□□□ 0.05
CSI1YMR025W TSR3Q12094 313 aaKnown RBP15.28■□□□□ 0.04
CSI1YMR025W HAA1Q12753 694 aaKnown RBP15.22■□□□□ 0.03
CSI1YMR025W RSE1Q04693 1361 aaKnown RBP15.11■□□□□ 0.01
CSI1YMR025W AVT3P36062 692 aa15.03■□□□□ -0
CSI1YMR025W BFR2Q06631 534 aaKnown RBP14.77□□□□□ -0.05
CSI1YMR025W RPL17AP05740 184 aaKnown RBP14.66□□□□□ -0.06
CSI1YMR025W MRPL32P25348 183 aa14.66□□□□□ -0.06
CSI1YMR025W RPL17BP46990 184 aaKnown RBP14.66□□□□□ -0.06
CSI1YMR025W REB1P21538 810 aa14.59□□□□□ -0.07
CSI1YMR025W YGL015CP33199 130 aa14.07□□□□□ -0.16
CSI1YMR025W SPT21P35209 758 aa14.01□□□□□ -0.17
CSI1YMR025W CDC27P38042 758 aa13.93□□□□□ -0.18
CSI1YMR025W YKR023WP36119 530 aaKnown RBP13.88□□□□□ -0.19
CSI1YMR025W HOP09932 586 aa13.6□□□□□ -0.23
CSI1YMR025W TFC8Q12308 588 aa13.59□□□□□ -0.23
CSI1YMR025W DCD1P06773 312 aa13.55□□□□□ -0.24
CSI1YMR025W UBP10P53874 792 aaPredicted RBP13.53□□□□□ -0.24
CSI1YMR025W MAP2P38174 421 aaKnown RBP13.51□□□□□ -0.25
CSI1YMR025W RIM101P33400 625 aa13.5□□□□□ -0.25
CSI1YMR025W SCY1P53009 804 aa13.22□□□□□ -0.29
CSI1YMR025W BCH2P36122 765 aa13.14□□□□□ -0.31
CSI1YMR025W OXP1P28273 1286 aa13.06□□□□□ -0.32
CSI1YMR025W SLX5P32828 619 aaKnown RBP13.05□□□□□ -0.32
CSI1YMR025W TIF4632P39936 914 aaKnown RBP12.97□□□□□ -0.33
CSI1YMR025W BUD31P25337 157 aaPredicted RBP12.92□□□□□ -0.34
CSI1YMR025W TFA1P36100 482 aa12.91□□□□□ -0.34
CSI1YMR025W TGL3P40308 642 aa12.91□□□□□ -0.34
CSI1YMR025W PTP3P40048 928 aa12.86□□□□□ -0.35
CSI1YMR025W YIL055CP40523 627 aaKnown RBP12.86□□□□□ -0.35
CSI1YMR025W EPS1P40557 701 aa12.81□□□□□ -0.36
CSI1YMR025W BDF1P35817 686 aa12.76□□□□□ -0.37
CSI1YMR025W YAH1Q12184 172 aaKnown RBP12.68□□□□□ -0.38
CSI1YMR025W RSM7P47150 247 aa12.67□□□□□ -0.38
CSI1YMR025W BBC1P47068 1157 aa12.57□□□□□ -0.4
CSI1YMR025W AI2P03876 854 aa12.56□□□□□ -0.4
CSI1YMR025W UBP9P39967 754 aa12.53□□□□□ -0.4
CSI1YMR025W YLR271WQ06152 274 aa12.45□□□□□ -0.42
CSI1YMR025W MST1P07236 462 aa12.36□□□□□ -0.43
CSI1YMR025W YOR238WQ08634 303 aa12.33□□□□□ -0.44
CSI1YMR025W NSR1P27476 414 aaKnown RBP RIP-Chip data12.32□□□□□ -0.44not detected
CSI1YMR025W SIS1P25294 352 aaKnown RBP12.31□□□□□ -0.44
CSI1YMR025W SSP1P38871 571 aa12.27□□□□□ -0.45
CSI1YMR025W PSD2P53037 1138 aaKnown RBP12.27□□□□□ -0.45
CSI1YMR025W YAP5P40574 245 aa12.24□□□□□ -0.45
CSI1YMR025W ARP8Q12386 881 aaKnown RBP RIP-Chip data12.2□□□□□ -0.46not detected
CSI1YMR025W YBL029C-AQ3E756 94 aa12.19□□□□□ -0.46
CSI1YMR025W MRM1P25270 412 aa12.11□□□□□ -0.47
CSI1YMR025W VNX1P42839 908 aa12.06□□□□□ -0.48
CSI1YMR025W CST9Q06032 482 aa12.02□□□□□ -0.49
CSI1YMR025W WSC3Q12215 556 aa12.01□□□□□ -0.49
CSI1YMR025W GTT3P39996 337 aa11.98□□□□□ -0.49
CSI1YMR025W MGA2P40578 1113 aa11.98□□□□□ -0.49
CSI1YMR025W PIB1Q06651 286 aa11.98□□□□□ -0.49
CSI1YMR025W SPP1Q03012 353 aa11.95□□□□□ -0.5
CSI1YMR025W RTG3P38165 486 aa11.84□□□□□ -0.51
CSI1YMR025W VPS29P38759 282 aa11.84□□□□□ -0.51
CSI1YMR025W TIF11P38912 153 aaKnown RBP11.84□□□□□ -0.51
CSI1YMR025W YMR1P47147 688 aaKnown RBP RIP-Chip data11.81□□□□□ -0.52not detected
CSI1YMR025W DBP1P24784 617 aaKnown RBP11.77□□□□□ -0.53
CSI1YMR025W YFR006WP43590 535 aa11.75□□□□□ -0.53
CSI1YMR025W RCR1P38212 213 aa11.73□□□□□ -0.53
CSI1YMR025W STS1P38637 319 aa11.72□□□□□ -0.53
CSI1YMR025W ULI1P43604 169 aa11.7□□□□□ -0.54
CSI1YMR025W FKH1P40466 484 aa11.67□□□□□ -0.54
CSI1YMR025W MSB4Q12317 492 aa11.67□□□□□ -0.54
CSI1YMR025W AIR2Q12476 344 aaKnown RBP11.67□□□□□ -0.54
CSI1YMR025W IOC2Q12072 812 aa11.66□□□□□ -0.54
CSI1YMR025W LDB19Q12502 818 aa11.66□□□□□ -0.54
CSI1YMR025W YOL036WQ08206 761 aa11.65□□□□□ -0.54
CSI1YMR025W VMA1P17255 1071 aaKnown RBP11.64□□□□□ -0.55
CSI1YMR025W SET4P42948 560 aa11.64□□□□□ -0.55
CSI1YMR025W EAP1P36041 632 aaKnown RBP11.6□□□□□ -0.55
CSI1YMR025W SAM3Q08986 587 aa11.57□□□□□ -0.56
CSI1YMR025W YJL171CP46992 396 aa11.56□□□□□ -0.56
CSI1YMR025W TRP5P00931 707 aaKnown RBP11.53□□□□□ -0.56
CSI1YMR025W RTG1P32607 177 aa11.46□□□□□ -0.57
CSI1YMR025W GYP5Q12344 894 aa11.42□□□□□ -0.58
CSI1YMR025W YNL035CP53962 389 aaKnown RBP11.41□□□□□ -0.58
CSI1YMR025W BMT6Q12291 365 aa11.41□□□□□ -0.58
CSI1YMR025W RAM2P29703 316 aa11.38□□□□□ -0.59
CSI1YMR025W NCR1Q12200 1170 aa11.38□□□□□ -0.59
CSI1YMR025W ABP1P15891 592 aaKnown RBP11.36□□□□□ -0.59
CSI1YMR025W SEC61P32915 480 aa11.36□□□□□ -0.59
CSI1YMR025W MAK11P20484 414 aaKnown RBP11.33□□□□□ -0.6
CSI1YMR025W DCW1P36091 449 aa11.32□□□□□ -0.6
CSI1YMR025W HTA1P04911 132 aaKnown RBP11.31□□□□□ -0.6
CSI1YMR025W HTA2P04912 132 aa11.31□□□□□ -0.6
CSI1YMR025W MIF2P35201 549 aa11.29□□□□□ -0.6
CSI1YMR025W DAN4P47179 1161 aa11.28□□□□□ -0.6
CSI1YMR025W JIP4Q03361 876 aa11.28□□□□□ -0.6
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms