RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeastyeast

Gene ATG38, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG38YLR211C MTC1P47018 478 aaKnown RBP14.69□□□□□ -0.06
ATG38YLR211C DRS1P32892 752 aaKnown RBP14.05□□□□□ -0.16
ATG38YLR211C FAP1P53971 965 aa12.75□□□□□ -0.37
ATG38YLR211C DIP2Q12220 943 aaPredicted RBP12.2□□□□□ -0.46
ATG38YLR211C PRI1P10363 409 aa12.19□□□□□ -0.46
ATG38YLR211C PRY3P47033 881 aa12.04□□□□□ -0.48
ATG38YLR211C AAD16Q02895 342 aa12.04□□□□□ -0.48
ATG38YLR211C ISW2Q08773 1120 aa12.03□□□□□ -0.48
ATG38YLR211C RPG1P38249 964 aaKnown RBP11.95□□□□□ -0.5
ATG38YLR211C AVT3P36062 692 aa11.91□□□□□ -0.5
ATG38YLR211C BFR2Q06631 534 aaKnown RBP11.84□□□□□ -0.51
ATG38YLR211C RSE1Q04693 1361 aaKnown RBP11.67□□□□□ -0.54
ATG38YLR211C TSR3Q12094 313 aaKnown RBP11.55□□□□□ -0.56
ATG38YLR211C YCK3P39962 524 aa11.51□□□□□ -0.57
ATG38YLR211C RPL17AP05740 184 aaKnown RBP11.3□□□□□ -0.6
ATG38YLR211C RPL17BP46990 184 aaKnown RBP11.3□□□□□ -0.6
ATG38YLR211C HAA1Q12753 694 aaKnown RBP11.25□□□□□ -0.61
ATG38YLR211C REB1P21538 810 aa11.16□□□□□ -0.62
ATG38YLR211C MRPL32P25348 183 aa11.03□□□□□ -0.64
ATG38YLR211C SPT21P35209 758 aa10.91□□□□□ -0.66
ATG38YLR211C TFA1P36100 482 aa10.71□□□□□ -0.69
ATG38YLR211C YKR023WP36119 530 aaKnown RBP10.7□□□□□ -0.7
ATG38YLR211C CDC27P38042 758 aa10.65□□□□□ -0.7
ATG38YLR211C RIM101P33400 625 aa10.59□□□□□ -0.71
ATG38YLR211C YGL015CP33199 130 aa10.47□□□□□ -0.73
ATG38YLR211C HOP09932 586 aa10.46□□□□□ -0.73
ATG38YLR211C TFC8Q12308 588 aa10.46□□□□□ -0.73
ATG38YLR211C DCD1P06773 312 aa10.43□□□□□ -0.74
ATG38YLR211C OXP1P28273 1286 aa10.28□□□□□ -0.76
ATG38YLR211C MAP2P38174 421 aaKnown RBP10.24□□□□□ -0.77
ATG38YLR211C UBP10P53874 792 aaPredicted RBP10.21□□□□□ -0.77
ATG38YLR211C BCH2P36122 765 aa10.13□□□□□ -0.79
ATG38YLR211C SCY1P53009 804 aa10.08□□□□□ -0.8
ATG38YLR211C PTP3P40048 928 aa9.99□□□□□ -0.81
ATG38YLR211C YIL055CP40523 627 aaKnown RBP9.99□□□□□ -0.81
ATG38YLR211C YAH1Q12184 172 aaKnown RBP9.96□□□□□ -0.82
ATG38YLR211C RSM7P47150 247 aa9.91□□□□□ -0.82
ATG38YLR211C SLX5P32828 619 aaKnown RBP9.89□□□□□ -0.83
ATG38YLR211C EPS1P40557 701 aa9.89□□□□□ -0.83
ATG38YLR211C BDF1P35817 686 aa9.85□□□□□ -0.83
ATG38YLR211C YLR271WQ06152 274 aa9.85□□□□□ -0.83
ATG38YLR211C AI2P03876 854 aa9.79□□□□□ -0.84
ATG38YLR211C SSP1P38871 571 aa9.77□□□□□ -0.85
ATG38YLR211C BUD31P25337 157 aaPredicted RBP9.75□□□□□ -0.85
ATG38YLR211C TIF4632P39936 914 aaKnown RBP9.74□□□□□ -0.85
ATG38YLR211C TGL3P40308 642 aa9.74□□□□□ -0.85
ATG38YLR211C BBC1P47068 1157 aa9.7□□□□□ -0.86
ATG38YLR211C PSD2P53037 1138 aaKnown RBP9.66□□□□□ -0.86
ATG38YLR211C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.6□□□□□ -0.87not detected
ATG38YLR211C CST9Q06032 482 aa9.53□□□□□ -0.88
ATG38YLR211C MGA2P40578 1113 aa9.48□□□□□ -0.89
ATG38YLR211C MRM1P25270 412 aa9.46□□□□□ -0.9
ATG38YLR211C NSR1P27476 414 aaKnown RBP RIP-Chip data9.43□□□□□ -0.9not detected
ATG38YLR211C MST1P07236 462 aa9.41□□□□□ -0.9
ATG38YLR211C YOR238WQ08634 303 aa9.35□□□□□ -0.91
ATG38YLR211C YAP5P40574 245 aa9.34□□□□□ -0.91
ATG38YLR211C VPS29P38759 282 aa9.29□□□□□ -0.92
ATG38YLR211C RCR1P38212 213 aa9.28□□□□□ -0.92
ATG38YLR211C UBP9P39967 754 aa9.26□□□□□ -0.93
ATG38YLR211C RTG3P38165 486 aa9.25□□□□□ -0.93
ATG38YLR211C PIB1Q06651 286 aa9.23□□□□□ -0.93
ATG38YLR211C SIS1P25294 352 aaKnown RBP9.19□□□□□ -0.94
ATG38YLR211C YBL029C-AQ3E756 94 aa9.19□□□□□ -0.94
ATG38YLR211C YMR1P47147 688 aaKnown RBP RIP-Chip data9.18□□□□□ -0.94not detected
ATG38YLR211C STS1P38637 319 aa9.17□□□□□ -0.94
ATG38YLR211C DBP1P24784 617 aaKnown RBP9.15□□□□□ -0.94
ATG38YLR211C YFR006WP43590 535 aa9.15□□□□□ -0.94
ATG38YLR211C VNX1P42839 908 aa9.11□□□□□ -0.95
ATG38YLR211C WSC3Q12215 556 aa9.1□□□□□ -0.95
ATG38YLR211C RAM2P29703 316 aa9.09□□□□□ -0.95
ATG38YLR211C GTT3P39996 337 aa9.08□□□□□ -0.96
ATG38YLR211C VMA1P17255 1071 aaKnown RBP9.03□□□□□ -0.96
ATG38YLR211C SPP1Q03012 353 aa8.99□□□□□ -0.97
ATG38YLR211C SAM3Q08986 587 aa8.97□□□□□ -0.97
ATG38YLR211C TIF11P38912 153 aaKnown RBP8.96□□□□□ -0.98
ATG38YLR211C YOL036WQ08206 761 aa8.96□□□□□ -0.98
ATG38YLR211C MAK11P20484 414 aaKnown RBP8.95□□□□□ -0.98
ATG38YLR211C SET4P42948 560 aa8.93□□□□□ -0.98
ATG38YLR211C MSB4Q12317 492 aa8.91□□□□□ -0.98
ATG38YLR211C IOC2Q12072 812 aa8.9□□□□□ -0.98
ATG38YLR211C EDS1P38073 919 aa8.89□□□□□ -0.99
ATG38YLR211C ULI1P43604 169 aa8.88□□□□□ -0.99
ATG38YLR211C COQ8P27697 501 aa8.85□□□□□ -0.99
ATG38YLR211C MIF2P35201 549 aa8.85□□□□□ -0.99
ATG38YLR211C TRP5P00931 707 aaKnown RBP8.83□□□□□ -1
ATG38YLR211C GYP5Q12344 894 aa8.83□□□□□ -1
ATG38YLR211C LDB19Q12502 818 aa8.82□□□□□ -1
ATG38YLR211C EAP1P36041 632 aaKnown RBP8.81□□□□□ -1
ATG38YLR211C PTC3P34221 468 aaKnown RBP8.8□□□□□ -1
ATG38YLR211C FKH1P40466 484 aa8.8□□□□□ -1
ATG38YLR211C AIR2Q12476 344 aaKnown RBP8.78□□□□□ -1
ATG38YLR211C DCW1P36091 449 aa8.76□□□□□ -1.01
ATG38YLR211C GRE2Q12068 342 aaKnown RBP8.74□□□□□ -1.01
ATG38YLR211C ABP1P15891 592 aaKnown RBP8.73□□□□□ -1.01
ATG38YLR211C HTA1P04911 132 aaKnown RBP8.71□□□□□ -1.02
ATG38YLR211C HTA2P04912 132 aa8.71□□□□□ -1.02
ATG38YLR211C RTG1P32607 177 aa8.71□□□□□ -1.02
ATG38YLR211C GUT1P32190 709 aa8.69□□□□□ -1.02
ATG38YLR211C DAN4P47179 1161 aa8.69□□□□□ -1.02
ATG38YLR211C ATH1P48016 1211 aa8.69□□□□□ -1.02
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms