RNA–Protein interactions for RNA: YKR029C

SET3, Transcript of Defining member of the SET3 histone deacetylase complex, yeast

Gene SET3, Length 2,256 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SET3	YKR029C	FAP1	P53971	965 aa		9.25	□□□□□ -0.93
SET3	YKR029C	PRY3	P47033	881 aa		8.77	□□□□□ -1.01
SET3	YKR029C	HAA1	Q12753	694 aa	Known RBP	8.15	□□□□□ -1.1
SET3	YKR029C	YCK3	P39962	524 aa		8.14	□□□□□ -1.11
SET3	YKR029C	AAD16	Q02895	342 aa		7.92	□□□□□ -1.14
SET3	YKR029C	MTC1	P47018	478 aa	Known RBP	7.83	□□□□□ -1.16
SET3	YKR029C	PRI1	P10363	409 aa		7.69	□□□□□ -1.18
SET3	YKR029C	BUD31	P25337	157 aa	Predicted RBP	7.43	□□□□□ -1.22
SET3	YKR029C	YGL015C	P33199	130 aa		7.19	□□□□□ -1.26
SET3	YKR029C	TSR3	Q12094	313 aa	Known RBP	7.16	□□□□□ -1.26
SET3	YKR029C	ISW2	Q08773	1120 aa		6.96	□□□□□ -1.3
SET3	YKR029C	MRPL32	P25348	183 aa		6.94	□□□□□ -1.3
SET3	YKR029C	SIS1	P25294	352 aa	Known RBP	6.92	□□□□□ -1.3
SET3	YKR029C	RPG1	P38249	964 aa	Known RBP	6.9	□□□□□ -1.3
SET3	YKR029C	UBP9	P39967	754 aa		6.52	□□□□□ -1.37
SET3	YKR029C	UBP10	P53874	792 aa	Predicted RBP	6.32	□□□□□ -1.4
SET3	YKR029C	MAP2	P38174	421 aa	Known RBP	6.22	□□□□□ -1.41
SET3	YKR029C	CDC27	P38042	758 aa		6.18	□□□□□ -1.42
SET3	YKR029C	TIF4632	P39936	914 aa	Known RBP	6.09	□□□□□ -1.44
SET3	YKR029C	TGL3	P40308	642 aa		6.08	□□□□□ -1.44
SET3	YKR029C	REB1	P21538	810 aa		5.9	□□□□□ -1.46
SET3	YKR029C	SLX5	P32828	619 aa	Known RBP	5.83	□□□□□ -1.48
SET3	YKR029C	RSE1	Q04693	1361 aa	Known RBP	5.81	□□□□□ -1.48
SET3	YKR029C	YJL171C	P46992	396 aa		5.8	□□□□□ -1.48
SET3	YKR029C	RGA2	Q06407	1009 aa		5.8	□□□□□ -1.48
SET3	YKR029C	YBL029C-A	Q3E756	94 aa		5.77	□□□□□ -1.49
SET3	YKR029C	SCY1	P53009	804 aa		5.76	□□□□□ -1.49
SET3	YKR029C	RPL17A	P05740	184 aa	Known RBP	5.74	□□□□□ -1.49
SET3	YKR029C	RPL17B	P46990	184 aa	Known RBP	5.74	□□□□□ -1.49
SET3	YKR029C	AIR2	Q12476	344 aa	Known RBP	5.7	□□□□□ -1.5
SET3	YKR029C	YKR023W	P36119	530 aa	Known RBP	5.69	□□□□□ -1.5
SET3	YKR029C	VNX1	P42839	908 aa		5.64	□□□□□ -1.51
SET3	YKR029C	FKH1	P40466	484 aa		5.61	□□□□□ -1.51
SET3	YKR029C	SPP1	Q03012	353 aa		5.6	□□□□□ -1.51
SET3	YKR029C	TFC8	Q12308	588 aa		5.59	□□□□□ -1.51
SET3	YKR029C	DCD1	P06773	312 aa		5.58	□□□□□ -1.52
SET3	YKR029C	MST1	P07236	462 aa		5.58	□□□□□ -1.52
SET3	YKR029C	HO	P09932	586 aa		5.58	□□□□□ -1.52
SET3	YKR029C	BMT6	Q12291	365 aa		5.53	□□□□□ -1.52
SET3	YKR029C	YOR238W	Q08634	303 aa		5.48	□□□□□ -1.53
SET3	YKR029C	DIP2	Q12220	943 aa	Predicted RBP	5.41	□□□□□ -1.54
SET3	YKR029C	TIF11	P38912	153 aa	Known RBP	5.41	□□□□□ -1.54
SET3	YKR029C	WSC3	Q12215	556 aa		5.4	□□□□□ -1.54
SET3	YKR029C	DRS1	P32892	752 aa	Known RBP	5.38	□□□□□ -1.55
SET3	YKR029C	RGA1	P39083	1007 aa		5.37	□□□□□ -1.55
SET3	YKR029C	BCH2	P36122	765 aa		5.32	□□□□□ -1.56
SET3	YKR029C	LDB19	Q12502	818 aa		5.32	□□□□□ -1.56
SET3	YKR029C	SPT21	P35209	758 aa		5.31	□□□□□ -1.56
SET3	YKR029C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.23	□□□□□ -1.57	not detected
SET3	YKR029C	BCK2	P33306	851 aa		5.22	□□□□□ -1.57
SET3	YKR029C	ULI1	P43604	169 aa		5.21	□□□□□ -1.58
SET3	YKR029C	IOC2	Q12072	812 aa		5.21	□□□□□ -1.58
SET3	YKR029C	YAP5	P40574	245 aa		5.16	□□□□□ -1.58
SET3	YKR029C	GTT3	P39996	337 aa		5.14	□□□□□ -1.59
SET3	YKR029C	BDF1	P35817	686 aa		5.09	□□□□□ -1.59
SET3	YKR029C	NCR1	Q12200	1170 aa		5.07	□□□□□ -1.6
SET3	YKR029C	EPS1	P40557	701 aa		5.06	□□□□□ -1.6
SET3	YKR029C	RTG1	P32607	177 aa		5.06	□□□□□ -1.6
SET3	YKR029C	AVT3	P36062	692 aa		5	□□□□□ -1.61
SET3	YKR029C	CHL1	P22516	861 aa	Predicted RBP	4.98	□□□□□ -1.61
SET3	YKR029C	EAP1	P36041	632 aa	Known RBP	4.98	□□□□□ -1.61
SET3	YKR029C	XDJ1	P39102	459 aa		4.97	□□□□□ -1.61
SET3	YKR029C	DPS1	P04802	557 aa	Known RBP	4.96	□□□□□ -1.62
SET3	YKR029C	SEC61	P32915	480 aa		4.95	□□□□□ -1.62
SET3	YKR029C	MSB4	Q12317	492 aa		4.93	□□□□□ -1.62
SET3	YKR029C	YNL035C	P53962	389 aa	Known RBP	4.92	□□□□□ -1.62
SET3	YKR029C	TFG1	P41895	735 aa	Predicted RBP	4.9	□□□□□ -1.63
SET3	YKR029C	SAP30	P38429	201 aa		4.87	□□□□□ -1.63
SET3	YKR029C	PRE3	P38624	215 aa		4.87	□□□□□ -1.63
SET3	YKR029C	TRP5	P00931	707 aa	Known RBP	4.86	□□□□□ -1.63
SET3	YKR029C	VRP1	P37370	817 aa		4.84	□□□□□ -1.64
SET3	YKR029C	SRC1	Q03707	834 aa		4.84	□□□□□ -1.64
SET3	YKR029C	YDL129W	Q07555	291 aa		4.75	□□□□□ -1.65
SET3	YKR029C	SET4	P42948	560 aa		4.75	□□□□□ -1.65
SET3	YKR029C	YOL036W	Q08206	761 aa		4.74	□□□□□ -1.65
SET3	YKR029C	PIB1	Q06651	286 aa		4.73	□□□□□ -1.65
SET3	YKR029C	RIM101	P33400	625 aa		4.72	□□□□□ -1.65
SET3	YKR029C	YPL062W	Q02781	134 aa		4.68	□□□□□ -1.66
SET3	YKR029C	BBC1	P47068	1157 aa		4.67	□□□□□ -1.66
SET3	YKR029C	DAN4	P47179	1161 aa		4.63	□□□□□ -1.67
SET3	YKR029C	JIP4	Q03361	876 aa		4.63	□□□□□ -1.67
SET3	YKR029C	ELP4	Q02884	456 aa	Known RBP	4.55	□□□□□ -1.68
SET3	YKR029C	PTP3	P40048	928 aa		4.53	□□□□□ -1.68
SET3	YKR029C	AI2	P03876	854 aa		4.5	□□□□□ -1.69
SET3	YKR029C	YDR344C	Q05510	147 aa		4.48	□□□□□ -1.69
SET3	YKR029C	OXP1	P28273	1286 aa		4.47	□□□□□ -1.69
SET3	YKR029C	YIL055C	P40523	627 aa	Known RBP	4.47	□□□□□ -1.69
SET3	YKR029C	SAM3	Q08986	587 aa		4.46	□□□□□ -1.7
SET3	YKR029C	TRK1	P12685	1235 aa		4.44	□□□□□ -1.7
SET3	YKR029C	ABP1	P15891	592 aa	Known RBP	4.43	□□□□□ -1.7
SET3	YKR029C	PTC4	P38089	393 aa		4.43	□□□□□ -1.7
SET3	YKR029C	VMA1	P17255	1071 aa	Known RBP	4.4	□□□□□ -1.71
SET3	YKR029C	RSM7	P47150	247 aa		4.4	□□□□□ -1.71
SET3	YKR029C	RAS1	P01119	309 aa		4.38	□□□□□ -1.71
SET3	YKR029C	HTA1	P04911	132 aa	Known RBP	4.37	□□□□□ -1.71
SET3	YKR029C	HTA2	P04912	132 aa		4.37	□□□□□ -1.71
SET3	YKR029C	ARH1	P48360	493 aa		4.37	□□□□□ -1.71
SET3	YKR029C	YEL023C	P39992	682 aa		4.36	□□□□□ -1.71
SET3	YKR029C	SPT23	P35210	1082 aa		4.35	□□□□□ -1.71
SET3	YKR029C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms