RNA–Protein interactions for RNA: YKL028W

TFA1, Transcript of TFIIE large subunit, yeastyeast

Gene TFA1, Length 1,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TFA1YKL028W MTC1P47018 478 aaKnown RBP13.99□□□□□ -0.17
TFA1YKL028W FAP1P53971 965 aa13.1□□□□□ -0.31
TFA1YKL028W DRS1P32892 752 aaKnown RBP12.58□□□□□ -0.4
TFA1YKL028W PRY3P47033 881 aa12.34□□□□□ -0.43
TFA1YKL028W PRI1P10363 409 aa12.04□□□□□ -0.48
TFA1YKL028W AAD16Q02895 342 aa12.01□□□□□ -0.49
TFA1YKL028W ISW2Q08773 1120 aa11.68□□□□□ -0.54
TFA1YKL028W YCK3P39962 524 aa11.66□□□□□ -0.54
TFA1YKL028W RPG1P38249 964 aaKnown RBP11.56□□□□□ -0.56
TFA1YKL028W HAA1Q12753 694 aaKnown RBP11.52□□□□□ -0.56
TFA1YKL028W TSR3Q12094 313 aaKnown RBP11.35□□□□□ -0.59
TFA1YKL028W DIP2Q12220 943 aaPredicted RBP11.17□□□□□ -0.62
TFA1YKL028W RSE1Q04693 1361 aaKnown RBP10.95□□□□□ -0.66
TFA1YKL028W MRPL32P25348 183 aa10.89□□□□□ -0.67
TFA1YKL028W AVT3P36062 692 aa10.67□□□□□ -0.7
TFA1YKL028W RPL17AP05740 184 aaKnown RBP10.65□□□□□ -0.7
TFA1YKL028W RPL17BP46990 184 aaKnown RBP10.65□□□□□ -0.7
TFA1YKL028W REB1P21538 810 aa10.64□□□□□ -0.71
TFA1YKL028W YGL015CP33199 130 aa10.55□□□□□ -0.72
TFA1YKL028W CDC27P38042 758 aa10.3□□□□□ -0.76
TFA1YKL028W BFR2Q06631 534 aaKnown RBP10.24□□□□□ -0.77
TFA1YKL028W SPT21P35209 758 aa10.18□□□□□ -0.78
TFA1YKL028W YKR023WP36119 530 aaKnown RBP10.15□□□□□ -0.79
TFA1YKL028W UBP10P53874 792 aaPredicted RBP10.08□□□□□ -0.8
TFA1YKL028W MAP2P38174 421 aaKnown RBP10.03□□□□□ -0.8
TFA1YKL028W HOP09932 586 aa9.93□□□□□ -0.82
TFA1YKL028W TFC8Q12308 588 aa9.93□□□□□ -0.82
TFA1YKL028W DCD1P06773 312 aa9.92□□□□□ -0.82
TFA1YKL028W BUD31P25337 157 aaPredicted RBP9.92□□□□□ -0.82
TFA1YKL028W SCY1P53009 804 aa9.74□□□□□ -0.85
TFA1YKL028W RIM101P33400 625 aa9.68□□□□□ -0.86
TFA1YKL028W SLX5P32828 619 aaKnown RBP9.65□□□□□ -0.87
TFA1YKL028W TIF4632P39936 914 aaKnown RBP9.63□□□□□ -0.87
TFA1YKL028W TGL3P40308 642 aa9.58□□□□□ -0.88
TFA1YKL028W BCH2P36122 765 aa9.57□□□□□ -0.88
TFA1YKL028W UBP9P39967 754 aa9.43□□□□□ -0.9
TFA1YKL028W SIS1P25294 352 aaKnown RBP9.39□□□□□ -0.91
TFA1YKL028W OXP1P28273 1286 aa9.34□□□□□ -0.91
TFA1YKL028W EPS1P40557 701 aa9.34□□□□□ -0.91
TFA1YKL028W BDF1P35817 686 aa9.29□□□□□ -0.92
TFA1YKL028W PTP3P40048 928 aa9.22□□□□□ -0.93
TFA1YKL028W YIL055CP40523 627 aaKnown RBP9.17□□□□□ -0.94
TFA1YKL028W MST1P07236 462 aa9.14□□□□□ -0.95
TFA1YKL028W YBL029C-AQ3E756 94 aa9.1□□□□□ -0.95
TFA1YKL028W YOR238WQ08634 303 aa9.09□□□□□ -0.95
TFA1YKL028W NSR1P27476 414 aaKnown RBP RIP-Chip data9.08□□□□□ -0.96not detected
TFA1YKL028W BBC1P47068 1157 aa9.05□□□□□ -0.96
TFA1YKL028W RSM7P47150 247 aa9.05□□□□□ -0.96
TFA1YKL028W TFA1P36100 482 aa9.05□□□□□ -0.96
TFA1YKL028W AI2P03876 854 aa9.03□□□□□ -0.96
TFA1YKL028W YAH1Q12184 172 aaKnown RBP9.01□□□□□ -0.97
TFA1YKL028W YAP5P40574 245 aa8.97□□□□□ -0.97
TFA1YKL028W VNX1P42839 908 aa8.95□□□□□ -0.98
TFA1YKL028W WSC3Q12215 556 aa8.88□□□□□ -0.99
TFA1YKL028W SPP1Q03012 353 aa8.87□□□□□ -0.99
TFA1YKL028W YLR271WQ06152 274 aa8.83□□□□□ -1
TFA1YKL028W GTT3P39996 337 aa8.81□□□□□ -1
TFA1YKL028W PSD2P53037 1138 aaKnown RBP8.78□□□□□ -1
TFA1YKL028W TIF11P38912 153 aaKnown RBP8.77□□□□□ -1.01
TFA1YKL028W FKH1P40466 484 aa8.76□□□□□ -1.01
TFA1YKL028W AIR2Q12476 344 aaKnown RBP8.73□□□□□ -1.01
TFA1YKL028W PIB1Q06651 286 aa8.71□□□□□ -1.02
TFA1YKL028W MRM1P25270 412 aa8.69□□□□□ -1.02
TFA1YKL028W YJL171CP46992 396 aa8.64□□□□□ -1.03
TFA1YKL028W LDB19Q12502 818 aa8.64□□□□□ -1.03
TFA1YKL028W ULI1P43604 169 aa8.63□□□□□ -1.03
TFA1YKL028W IOC2Q12072 812 aa8.61□□□□□ -1.03
TFA1YKL028W RQC2Q12532 1038 aaKnown RBP8.61□□□□□ -1.03
TFA1YKL028W SSP1P38871 571 aa8.6□□□□□ -1.03
TFA1YKL028W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.59□□□□□ -1.03not detected
TFA1YKL028W MSB4Q12317 492 aa8.57□□□□□ -1.04
TFA1YKL028W YOL036WQ08206 761 aa8.54□□□□□ -1.04
TFA1YKL028W CST9Q06032 482 aa8.52□□□□□ -1.05
TFA1YKL028W BMT6Q12291 365 aa8.52□□□□□ -1.05
TFA1YKL028W EAP1P36041 632 aaKnown RBP8.51□□□□□ -1.05
TFA1YKL028W YMR1P47147 688 aaKnown RBP RIP-Chip data8.51□□□□□ -1.05not detected
TFA1YKL028W SET4P42948 560 aa8.5□□□□□ -1.05
TFA1YKL028W VPS29P38759 282 aa8.48□□□□□ -1.05
TFA1YKL028W DBP1P24784 617 aaKnown RBP8.47□□□□□ -1.05
TFA1YKL028W TRP5P00931 707 aaKnown RBP8.46□□□□□ -1.06
TFA1YKL028W RTG1P32607 177 aa8.46□□□□□ -1.06
TFA1YKL028W YFR006WP43590 535 aa8.46□□□□□ -1.06
TFA1YKL028W RTG3P38165 486 aa8.45□□□□□ -1.06
TFA1YKL028W VMA1P17255 1071 aaKnown RBP8.44□□□□□ -1.06
TFA1YKL028W STS1P38637 319 aa8.44□□□□□ -1.06
TFA1YKL028W MGA2P40578 1113 aa8.44□□□□□ -1.06
TFA1YKL028W SAM3Q08986 587 aa8.39□□□□□ -1.07
TFA1YKL028W YNL035CP53962 389 aaKnown RBP8.37□□□□□ -1.07
TFA1YKL028W RCR1P38212 213 aa8.36□□□□□ -1.07
TFA1YKL028W NCR1Q12200 1170 aa8.36□□□□□ -1.07
TFA1YKL028W SEC61P32915 480 aa8.34□□□□□ -1.07
TFA1YKL028W ABP1P15891 592 aaKnown RBP8.26□□□□□ -1.09
TFA1YKL028W TFG1P41895 735 aaPredicted RBP8.23□□□□□ -1.09
TFA1YKL028W DAN4P47179 1161 aa8.23□□□□□ -1.09
TFA1YKL028W GYP5Q12344 894 aa8.23□□□□□ -1.09
TFA1YKL028W JIP4Q03361 876 aa8.22□□□□□ -1.09
TFA1YKL028W HTA1P04911 132 aaKnown RBP8.2□□□□□ -1.1
TFA1YKL028W HTA2P04912 132 aa8.2□□□□□ -1.1
TFA1YKL028W SAP30P38429 201 aa8.2□□□□□ -1.1
TFA1YKL028W DCW1P36091 449 aa8.19□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms