RNA–Protein interactions for RNA: YJR005W

APL1, Transcript of Beta-adaptin, yeast

Gene APL1, Length 2,103 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APL1	YJR005W	FAP1	P53971	965 aa		7.61	□□□□□ -1.19
APL1	YJR005W	PRY3	P47033	881 aa		7.21	□□□□□ -1.26
APL1	YJR005W	HAA1	Q12753	694 aa	Known RBP	6.7	□□□□□ -1.34
APL1	YJR005W	YCK3	P39962	524 aa		6.67	□□□□□ -1.34
APL1	YJR005W	AAD16	Q02895	342 aa		6.49	□□□□□ -1.37
APL1	YJR005W	MTC1	P47018	478 aa	Known RBP	6.37	□□□□□ -1.39
APL1	YJR005W	PRI1	P10363	409 aa		6.29	□□□□□ -1.4
APL1	YJR005W	BUD31	P25337	157 aa	Predicted RBP	6.11	□□□□□ -1.43
APL1	YJR005W	YGL015C	P33199	130 aa		5.91	□□□□□ -1.46
APL1	YJR005W	TSR3	Q12094	313 aa	Known RBP	5.85	□□□□□ -1.47
APL1	YJR005W	SIS1	P25294	352 aa	Known RBP	5.69	□□□□□ -1.5
APL1	YJR005W	MRPL32	P25348	183 aa		5.68	□□□□□ -1.5
APL1	YJR005W	ISW2	Q08773	1120 aa		5.68	□□□□□ -1.5
APL1	YJR005W	RPG1	P38249	964 aa	Known RBP	5.64	□□□□□ -1.51
APL1	YJR005W	DRS1	P32892	752 aa	Known RBP	5.63	□□□□□ -1.51
APL1	YJR005W	UBP9	P39967	754 aa		5.36	□□□□□ -1.55
APL1	YJR005W	UBP10	P53874	792 aa	Predicted RBP	5.16	□□□□□ -1.58
APL1	YJR005W	MAP2	P38174	421 aa	Known RBP	5.08	□□□□□ -1.6
APL1	YJR005W	CDC27	P38042	758 aa		5.03	□□□□□ -1.6
APL1	YJR005W	TIF4632	P39936	914 aa	Known RBP	4.99	□□□□□ -1.61
APL1	YJR005W	TGL3	P40308	642 aa		4.98	□□□□□ -1.61
APL1	YJR005W	DIP2	Q12220	943 aa	Predicted RBP	4.91	□□□□□ -1.62
APL1	YJR005W	REB1	P21538	810 aa		4.81	□□□□□ -1.64
APL1	YJR005W	RGA2	Q06407	1009 aa		4.78	□□□□□ -1.64
APL1	YJR005W	YJL171C	P46992	396 aa		4.77	□□□□□ -1.65
APL1	YJR005W	SLX5	P32828	619 aa	Known RBP	4.76	□□□□□ -1.65
APL1	YJR005W	AVT3	P36062	692 aa		4.75	□□□□□ -1.65
APL1	YJR005W	YBL029C-A	Q3E756	94 aa		4.73	□□□□□ -1.65
APL1	YJR005W	RSE1	Q04693	1361 aa	Known RBP	4.72	□□□□□ -1.65
APL1	YJR005W	SCY1	P53009	804 aa		4.7	□□□□□ -1.66
APL1	YJR005W	BFR2	Q06631	534 aa	Known RBP	4.68	□□□□□ -1.66
APL1	YJR005W	AIR2	Q12476	344 aa	Known RBP	4.67	□□□□□ -1.66
APL1	YJR005W	RPL17A	P05740	184 aa	Known RBP	4.65	□□□□□ -1.67
APL1	YJR005W	RPL17B	P46990	184 aa	Known RBP	4.65	□□□□□ -1.67
APL1	YJR005W	YKR023W	P36119	530 aa	Known RBP	4.63	□□□□□ -1.67
APL1	YJR005W	VNX1	P42839	908 aa		4.61	□□□□□ -1.67
APL1	YJR005W	SPP1	Q03012	353 aa		4.6	□□□□□ -1.67
APL1	YJR005W	FKH1	P40466	484 aa		4.58	□□□□□ -1.68
APL1	YJR005W	MST1	P07236	462 aa		4.55	□□□□□ -1.68
APL1	YJR005W	DCD1	P06773	312 aa		4.55	□□□□□ -1.68
APL1	YJR005W	TFC8	Q12308	588 aa		4.55	□□□□□ -1.68
APL1	YJR005W	HO	P09932	586 aa		4.54	□□□□□ -1.68
APL1	YJR005W	BMT6	Q12291	365 aa		4.54	□□□□□ -1.68
APL1	YJR005W	YOR238W	Q08634	303 aa		4.48	□□□□□ -1.69
APL1	YJR005W	TIF11	P38912	153 aa	Known RBP	4.42	□□□□□ -1.7
APL1	YJR005W	RGA1	P39083	1007 aa		4.42	□□□□□ -1.7
APL1	YJR005W	WSC3	Q12215	556 aa		4.42	□□□□□ -1.7
APL1	YJR005W	SPT21	P35209	758 aa		4.4	□□□□□ -1.7
APL1	YJR005W	LDB19	Q12502	818 aa		4.35	□□□□□ -1.71
APL1	YJR005W	BCH2	P36122	765 aa		4.33	□□□□□ -1.72
APL1	YJR005W	BCK2	P33306	851 aa		4.28	□□□□□ -1.72
APL1	YJR005W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
APL1	YJR005W	ULI1	P43604	169 aa		4.25	□□□□□ -1.73
APL1	YJR005W	IOC2	Q12072	812 aa		4.25	□□□□□ -1.73
APL1	YJR005W	RIM101	P33400	625 aa		4.24	□□□□□ -1.73
APL1	YJR005W	YAP5	P40574	245 aa		4.21	□□□□□ -1.74
APL1	YJR005W	GTT3	P39996	337 aa		4.19	□□□□□ -1.74
APL1	YJR005W	NCR1	Q12200	1170 aa		4.15	□□□□□ -1.74
APL1	YJR005W	BDF1	P35817	686 aa		4.13	□□□□□ -1.75
APL1	YJR005W	OXP1	P28273	1286 aa		4.13	□□□□□ -1.75
APL1	YJR005W	RTG1	P32607	177 aa		4.13	□□□□□ -1.75
APL1	YJR005W	TFA1	P36100	482 aa		4.13	□□□□□ -1.75
APL1	YJR005W	EPS1	P40557	701 aa		4.12	□□□□□ -1.75
APL1	YJR005W	CHL1	P22516	861 aa	Predicted RBP	4.07	□□□□□ -1.76
APL1	YJR005W	XDJ1	P39102	459 aa		4.07	□□□□□ -1.76
APL1	YJR005W	DPS1	P04802	557 aa	Known RBP	4.06	□□□□□ -1.76
APL1	YJR005W	EAP1	P36041	632 aa	Known RBP	4.06	□□□□□ -1.76
APL1	YJR005W	SEC61	P32915	480 aa		4.04	□□□□□ -1.76
APL1	YJR005W	PTP3	P40048	928 aa		4.04	□□□□□ -1.76
APL1	YJR005W	YAH1	Q12184	172 aa	Known RBP	4.02	□□□□□ -1.77
APL1	YJR005W	MSB4	Q12317	492 aa		4.02	□□□□□ -1.77
APL1	YJR005W	YIL055C	P40523	627 aa	Known RBP	4.01	□□□□□ -1.77
APL1	YJR005W	TFG1	P41895	735 aa	Predicted RBP	4.01	□□□□□ -1.77
APL1	YJR005W	YNL035C	P53962	389 aa	Known RBP	4.01	□□□□□ -1.77
APL1	YJR005W	PRE3	P38624	215 aa		3.98	□□□□□ -1.77
APL1	YJR005W	SAP30	P38429	201 aa		3.98	□□□□□ -1.77
APL1	YJR005W	TRP5	P00931	707 aa	Known RBP	3.97	□□□□□ -1.77
APL1	YJR005W	RSM7	P47150	247 aa		3.97	□□□□□ -1.77
APL1	YJR005W	VRP1	P37370	817 aa		3.96	□□□□□ -1.78
APL1	YJR005W	SRC1	Q03707	834 aa		3.95	□□□□□ -1.78
APL1	YJR005W	AI2	P03876	854 aa		3.95	□□□□□ -1.78
APL1	YJR005W	YLR271W	Q06152	274 aa		3.94	□□□□□ -1.78
APL1	YJR005W	BBC1	P47068	1157 aa		3.91	□□□□□ -1.78
APL1	YJR005W	SSP1	P38871	571 aa		3.87	□□□□□ -1.79
APL1	YJR005W	SET4	P42948	560 aa		3.87	□□□□□ -1.79
APL1	YJR005W	YDL129W	Q07555	291 aa		3.87	□□□□□ -1.79
APL1	YJR005W	PSD2	P53037	1138 aa	Known RBP	3.86	□□□□□ -1.79
APL1	YJR005W	YOL036W	Q08206	761 aa		3.85	□□□□□ -1.79
APL1	YJR005W	PIB1	Q06651	286 aa		3.85	□□□□□ -1.79
APL1	YJR005W	YPL062W	Q02781	134 aa		3.83	□□□□□ -1.8
APL1	YJR005W	CST9	Q06032	482 aa		3.83	□□□□□ -1.8
APL1	YJR005W	MRM1	P25270	412 aa		3.82	□□□□□ -1.8
APL1	YJR005W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	3.81	□□□□□ -1.8	not detected
APL1	YJR005W	DAN4	P47179	1161 aa		3.78	□□□□□ -1.8
APL1	YJR005W	MGA2	P40578	1113 aa		3.77	□□□□□ -1.81
APL1	YJR005W	JIP4	Q03361	876 aa		3.77	□□□□□ -1.81
APL1	YJR005W	RCR1	P38212	213 aa		3.74	□□□□□ -1.81
APL1	YJR005W	VPS29	P38759	282 aa		3.73	□□□□□ -1.81
APL1	YJR005W	YFR006W	P43590	535 aa		3.71	□□□□□ -1.81
APL1	YJR005W	ELP4	Q02884	456 aa	Known RBP	3.71	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms