RNA–Protein interactions for RNA: YGR195W

SKI6, Transcript of Exosome non-catalytic core component, yeastyeast

Gene SKI6, Length 741 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SKI6YGR195W MTC1P47018 478 aaKnown RBP19.35■□□□□ 0.69
SKI6YGR195W FAP1P53971 965 aa18.44■□□□□ 0.54
SKI6YGR195W PRY3P47033 881 aa17.39■□□□□ 0.37
SKI6YGR195W DRS1P32892 752 aaKnown RBP17.37■□□□□ 0.37
SKI6YGR195W PRI1P10363 409 aa16.77■□□□□ 0.28
SKI6YGR195W AAD16Q02895 342 aa16.76■□□□□ 0.27
SKI6YGR195W YCK3P39962 524 aa16.43■□□□□ 0.22
SKI6YGR195W ISW2Q08773 1120 aa16.17■□□□□ 0.18
SKI6YGR195W RPG1P38249 964 aaKnown RBP16.15■□□□□ 0.18
SKI6YGR195W HAA1Q12753 694 aaKnown RBP16.07■□□□□ 0.16
SKI6YGR195W TSR3Q12094 313 aaKnown RBP15.94■□□□□ 0.14
SKI6YGR195W DIP2Q12220 943 aaPredicted RBP15.49■□□□□ 0.07
SKI6YGR195W MRPL32P25348 183 aa15.17■□□□□ 0.02
SKI6YGR195W RSE1Q04693 1361 aaKnown RBP15.14■□□□□ 0.01
SKI6YGR195W RPL17AP05740 184 aaKnown RBP14.8□□□□□ -0.04
SKI6YGR195W RPL17BP46990 184 aaKnown RBP14.8□□□□□ -0.04
SKI6YGR195W REB1P21538 810 aa14.76□□□□□ -0.05
SKI6YGR195W YGL015CP33199 130 aa14.71□□□□□ -0.05
SKI6YGR195W AVT3P36062 692 aa14.67□□□□□ -0.06
SKI6YGR195W CDC27P38042 758 aa14.4□□□□□ -0.1
SKI6YGR195W YKR023WP36119 530 aaKnown RBP14.13□□□□□ -0.15
SKI6YGR195W SPT21P35209 758 aa14.05□□□□□ -0.16
SKI6YGR195W BFR2Q06631 534 aaKnown RBP14.04□□□□□ -0.16
SKI6YGR195W MAP2P38174 421 aaKnown RBP14.02□□□□□ -0.17
SKI6YGR195W DCD1P06773 312 aa13.96□□□□□ -0.17
SKI6YGR195W HOP09932 586 aa13.92□□□□□ -0.18
SKI6YGR195W UBP10P53874 792 aaPredicted RBP13.87□□□□□ -0.19
SKI6YGR195W BUD31P25337 157 aaPredicted RBP13.85□□□□□ -0.19
SKI6YGR195W TFC8Q12308 588 aa13.79□□□□□ -0.2
SKI6YGR195W SCY1P53009 804 aa13.6□□□□□ -0.23
SKI6YGR195W SLX5P32828 619 aaKnown RBP13.37□□□□□ -0.27
SKI6YGR195W BCH2P36122 765 aa13.35□□□□□ -0.27
SKI6YGR195W RIM101P33400 625 aa13.34□□□□□ -0.27
SKI6YGR195W TIF4632P39936 914 aaKnown RBP13.32□□□□□ -0.28
SKI6YGR195W TGL3P40308 642 aa13.26□□□□□ -0.29
SKI6YGR195W SIS1P25294 352 aaKnown RBP13.17□□□□□ -0.3
SKI6YGR195W UBP9P39967 754 aa13.08□□□□□ -0.32
SKI6YGR195W OXP1P28273 1286 aa12.97□□□□□ -0.33
SKI6YGR195W EPS1P40557 701 aa12.95□□□□□ -0.34
SKI6YGR195W BDF1P35817 686 aa12.91□□□□□ -0.34
SKI6YGR195W PTP3P40048 928 aa12.79□□□□□ -0.36
SKI6YGR195W YBL029C-AQ3E756 94 aa12.71□□□□□ -0.37
SKI6YGR195W YIL055CP40523 627 aaKnown RBP12.7□□□□□ -0.38
SKI6YGR195W MST1P07236 462 aa12.6□□□□□ -0.39
SKI6YGR195W YOR238WQ08634 303 aa12.58□□□□□ -0.4
SKI6YGR195W YAH1Q12184 172 aaKnown RBP12.56□□□□□ -0.4
SKI6YGR195W RSM7P47150 247 aa12.51□□□□□ -0.41
SKI6YGR195W AI2P03876 854 aa12.5□□□□□ -0.41
SKI6YGR195W BBC1P47068 1157 aa12.47□□□□□ -0.41
SKI6YGR195W VNX1P42839 908 aa12.45□□□□□ -0.42
SKI6YGR195W WSC3Q12215 556 aa12.43□□□□□ -0.42
SKI6YGR195W YAP5P40574 245 aa12.37□□□□□ -0.43
SKI6YGR195W NSR1P27476 414 aaKnown RBP RIP-Chip data12.35□□□□□ -0.43not detected
SKI6YGR195W SPP1Q03012 353 aa12.35□□□□□ -0.43
SKI6YGR195W PIB1Q06651 286 aa12.23□□□□□ -0.45
SKI6YGR195W YLR271WQ06152 274 aa12.22□□□□□ -0.45
SKI6YGR195W GTT3P39996 337 aa12.16□□□□□ -0.46
SKI6YGR195W AIR2Q12476 344 aaKnown RBP12.14□□□□□ -0.47
SKI6YGR195W TIF11P38912 153 aaKnown RBP12.13□□□□□ -0.47
SKI6YGR195W PSD2P53037 1138 aaKnown RBP12.08□□□□□ -0.48
SKI6YGR195W FKH1P40466 484 aa12.07□□□□□ -0.48
SKI6YGR195W MRM1P25270 412 aa12.05□□□□□ -0.48
SKI6YGR195W TFA1P36100 482 aa12.02□□□□□ -0.49
SKI6YGR195W YJL171CP46992 396 aa12.02□□□□□ -0.49
SKI6YGR195W LDB19Q12502 818 aa12.01□□□□□ -0.49
SKI6YGR195W ULI1P43604 169 aa11.98□□□□□ -0.49
SKI6YGR195W IOC2Q12072 812 aa11.93□□□□□ -0.5
SKI6YGR195W SET4P42948 560 aa11.82□□□□□ -0.52
SKI6YGR195W YFR006WP43590 535 aa11.81□□□□□ -0.52
SKI6YGR195W CST9Q06032 482 aa11.81□□□□□ -0.52
SKI6YGR195W BMT6Q12291 365 aa11.81□□□□□ -0.52
SKI6YGR195W SSP1P38871 571 aa11.78□□□□□ -0.52
SKI6YGR195W YOL036WQ08206 761 aa11.77□□□□□ -0.53
SKI6YGR195W DBP1P24784 617 aaKnown RBP11.75□□□□□ -0.53
SKI6YGR195W VPS29P38759 282 aa11.74□□□□□ -0.53
SKI6YGR195W ARP8Q12386 881 aaKnown RBP RIP-Chip data11.73□□□□□ -0.53not detected
SKI6YGR195W TRP5P00931 707 aaKnown RBP11.72□□□□□ -0.53
SKI6YGR195W RTG1P32607 177 aa11.72□□□□□ -0.53
SKI6YGR195W MSB4Q12317 492 aa11.71□□□□□ -0.53
SKI6YGR195W YMR1P47147 688 aaKnown RBP RIP-Chip data11.7□□□□□ -0.54not detected
SKI6YGR195W STS1P38637 319 aa11.69□□□□□ -0.54
SKI6YGR195W EAP1P36041 632 aaKnown RBP11.66□□□□□ -0.54
SKI6YGR195W RCR1P38212 213 aa11.64□□□□□ -0.55
SKI6YGR195W VMA1P17255 1071 aaKnown RBP11.63□□□□□ -0.55
SKI6YGR195W RTG3P38165 486 aa11.63□□□□□ -0.55
SKI6YGR195W NCR1Q12200 1170 aa11.62□□□□□ -0.55
SKI6YGR195W MGA2P40578 1113 aa11.56□□□□□ -0.56
SKI6YGR195W YNL035CP53962 389 aaKnown RBP11.54□□□□□ -0.56
SKI6YGR195W SAM3Q08986 587 aa11.5□□□□□ -0.57
SKI6YGR195W SEC61P32915 480 aa11.47□□□□□ -0.57
SKI6YGR195W SAP30P38429 201 aa11.42□□□□□ -0.58
SKI6YGR195W DAN4P47179 1161 aa11.38□□□□□ -0.59
SKI6YGR195W GYP5Q12344 894 aa11.38□□□□□ -0.59
SKI6YGR195W DCW1P36091 449 aa11.37□□□□□ -0.59
SKI6YGR195W TFG1P41895 735 aaPredicted RBP11.36□□□□□ -0.59
SKI6YGR195W HTA1P04911 132 aaKnown RBP11.27□□□□□ -0.61
SKI6YGR195W HTA2P04912 132 aa11.27□□□□□ -0.61
SKI6YGR195W JIP4Q03361 876 aa11.27□□□□□ -0.61
SKI6YGR195W YEL023CP39992 682 aa11.25□□□□□ -0.61
SKI6YGR195W YDL129WQ07555 291 aa11.25□□□□□ -0.61
Retrieved 100 of 5,963 RNA–protein pairs in 75.6 ms