RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeastyeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP9YER098W DRS1P32892 752 aaKnown RBP12.27□□□□□ -0.45
UBP9YER098W MTC1P47018 478 aaKnown RBP11.35□□□□□ -0.59
UBP9YER098W BFR2Q06631 534 aaKnown RBP10.98□□□□□ -0.65
UBP9YER098W TFA1P36100 482 aa10.88□□□□□ -0.67
UBP9YER098W AVT3P36062 692 aa10.23□□□□□ -0.77
UBP9YER098W DIP2Q12220 943 aaPredicted RBP10.14□□□□□ -0.79
UBP9YER098W RQC2Q12532 1038 aaKnown RBP10.05□□□□□ -0.8
UBP9YER098W DMA1P38823 416 aa9.33□□□□□ -0.92
UBP9YER098W RSE1Q04693 1361 aaKnown RBP9.32□□□□□ -0.92
UBP9YER098W TAF7Q05021 590 aa9.3□□□□□ -0.92
UBP9YER098W PTP3P40048 928 aa9.02□□□□□ -0.97
UBP9YER098W ISW2Q08773 1120 aa9.02□□□□□ -0.97
UBP9YER098W RPL17AP05740 184 aaKnown RBP8.95□□□□□ -0.98
UBP9YER098W RPL17BP46990 184 aaKnown RBP8.95□□□□□ -0.98
UBP9YER098W RPG1P38249 964 aaKnown RBP8.91□□□□□ -0.98
UBP9YER098W LEO1P38439 464 aa8.87□□□□□ -0.99
UBP9YER098W REB1P21538 810 aa8.75□□□□□ -1.01
UBP9YER098W SSP1P38871 571 aa8.72□□□□□ -1.01
UBP9YER098W RIM101P33400 625 aa8.71□□□□□ -1.01
UBP9YER098W SPT21P35209 758 aa8.68□□□□□ -1.02
UBP9YER098W PRI1P10363 409 aa8.63□□□□□ -1.03
UBP9YER098W LEU3P08638 886 aa8.54□□□□□ -1.04
UBP9YER098W YAH1Q12184 172 aaKnown RBP8.52□□□□□ -1.05
UBP9YER098W OXP1P28273 1286 aa8.51□□□□□ -1.05
UBP9YER098W SAS10Q12136 610 aaPredicted RBP8.51□□□□□ -1.05
UBP9YER098W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.47□□□□□ -1.05not detected
UBP9YER098W YLR271WQ06152 274 aa8.42□□□□□ -1.06
UBP9YER098W FAP1P53971 965 aa8.38□□□□□ -1.07
UBP9YER098W YIL055CP40523 627 aaKnown RBP8.36□□□□□ -1.07
UBP9YER098W AAD16Q02895 342 aa8.35□□□□□ -1.07
UBP9YER098W MGA2P40578 1113 aa8.32□□□□□ -1.08
UBP9YER098W TSR3Q12094 313 aaKnown RBP8.28□□□□□ -1.08
UBP9YER098W DMA2P53924 522 aa8.27□□□□□ -1.09
UBP9YER098W CST9Q06032 482 aa8.23□□□□□ -1.09
UBP9YER098W RPN1P38764 993 aaKnown RBP8.22□□□□□ -1.09
UBP9YER098W RSM7P47150 247 aa8.22□□□□□ -1.09
UBP9YER098W YKR023WP36119 530 aaKnown RBP8.21□□□□□ -1.1
UBP9YER098W ABP1P15891 592 aaKnown RBP8.1□□□□□ -1.11
UBP9YER098W PSD2P53037 1138 aaKnown RBP8.09□□□□□ -1.11
UBP9YER098W HOP09932 586 aa8.07□□□□□ -1.12
UBP9YER098W SPB4P25808 606 aaPredicted RBP8.07□□□□□ -1.12
UBP9YER098W TFC8Q12308 588 aa8.04□□□□□ -1.12
UBP9YER098W AI2P03876 854 aa8.03□□□□□ -1.12
UBP9YER098W RLF2Q12495 606 aa8.03□□□□□ -1.12
UBP9YER098W SET1P38827 1080 aaKnown RBP8.03□□□□□ -1.12
UBP9YER098W DCD1P06773 312 aa8.02□□□□□ -1.13
UBP9YER098W RAM2P29703 316 aa8.01□□□□□ -1.13
UBP9YER098W CKB1P43639 278 aa8.01□□□□□ -1.13
UBP9YER098W VPS70P47161 811 aa8.01□□□□□ -1.13
UBP9YER098W YPR148CQ06523 435 aa7.98□□□□□ -1.13
UBP9YER098W BBC1P47068 1157 aa7.9□□□□□ -1.14
UBP9YER098W MRPL32P25348 183 aa7.9□□□□□ -1.15
UBP9YER098W IFH1P39520 1085 aa7.9□□□□□ -1.15
UBP9YER098W RCR1P38212 213 aa7.89□□□□□ -1.15
UBP9YER098W DSF2P38213 736 aa7.87□□□□□ -1.15
UBP9YER098W KIN1P13185 1064 aa7.85□□□□□ -1.15
UBP9YER098W MRM1P25270 412 aa7.85□□□□□ -1.15
UBP9YER098W BCH2P36122 765 aa7.85□□□□□ -1.15
UBP9YER098W CDC27P38042 758 aa7.85□□□□□ -1.15
UBP9YER098W PBS2P08018 668 aa7.83□□□□□ -1.16
UBP9YER098W YNR021WP53723 404 aaKnown RBP7.81□□□□□ -1.16
UBP9YER098W PRY3P47033 881 aa7.8□□□□□ -1.16
UBP9YER098W MAK11P20484 414 aaKnown RBP7.78□□□□□ -1.16
UBP9YER098W GLC3P32775 704 aa7.78□□□□□ -1.16
UBP9YER098W EPS1P40557 701 aa7.77□□□□□ -1.17
UBP9YER098W RTG3P38165 486 aa7.76□□□□□ -1.17
UBP9YER098W HGH1P48362 394 aaKnown RBP7.73□□□□□ -1.17
UBP9YER098W MAM3Q12296 706 aa7.73□□□□□ -1.17
UBP9YER098W AIM7Q12156 149 aa7.72□□□□□ -1.17
UBP9YER098W IES2P40154 320 aa7.71□□□□□ -1.18
UBP9YER098W BDF1P35817 686 aa7.69□□□□□ -1.18
UBP9YER098W COQ8P27697 501 aa7.69□□□□□ -1.18
UBP9YER098W GUA1P38625 525 aaKnown RBP7.68□□□□□ -1.18
UBP9YER098W DIT2P21595 489 aa7.68□□□□□ -1.18
UBP9YER098W NUP42P49686 430 aaKnown RBP7.67□□□□□ -1.18
UBP9YER098W REF2P42073 533 aaPredicted RBP7.64□□□□□ -1.19
UBP9YER098W VPS29P38759 282 aa7.62□□□□□ -1.19
UBP9YER098W MAK21Q12176 1025 aaKnown RBP7.59□□□□□ -1.19
UBP9YER098W ATF2P53296 535 aa7.58□□□□□ -1.2
UBP9YER098W MIF2P35201 549 aa7.58□□□□□ -1.2
UBP9YER098W YML020WQ03722 664 aa7.57□□□□□ -1.2
UBP9YER098W NOP53Q12080 455 aaKnown RBP7.57□□□□□ -1.2
UBP9YER098W HPC2Q01448 625 aa7.57□□□□□ -1.2
UBP9YER098W EDS1P38073 919 aa7.56□□□□□ -1.2
UBP9YER098W TFB3Q03290 321 aa7.56□□□□□ -1.2
UBP9YER098W SCY1P53009 804 aa7.55□□□□□ -1.2
UBP9YER098W COX6P00427 148 aa7.53□□□□□ -1.2
UBP9YER098W STS1P38637 319 aa7.51□□□□□ -1.21
UBP9YER098W SSA1P10591 642 aaKnown RBP7.5□□□□□ -1.21
UBP9YER098W YMR1P47147 688 aaKnown RBP RIP-Chip data7.49□□□□□ -1.21not detected
UBP9YER098W PKC1P24583 1151 aa7.48□□□□□ -1.21
UBP9YER098W GEF1P37020 779 aa7.48□□□□□ -1.21
UBP9YER098W BRL1P38770 471 aa7.48□□□□□ -1.21
UBP9YER098W NOP8Q08287 484 aaPredicted RBP7.48□□□□□ -1.21
UBP9YER098W SLX8P40072 274 aa7.48□□□□□ -1.21
UBP9YER098W SUB2Q07478 446 aaKnown RBP7.48□□□□□ -1.21
UBP9YER098W YFR006WP43590 535 aa7.47□□□□□ -1.21
UBP9YER098W DBP1P24784 617 aaKnown RBP7.45□□□□□ -1.22
UBP9YER098W PTC3P34221 468 aaKnown RBP7.44□□□□□ -1.22
UBP9YER098W YCK3P39962 524 aa7.43□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms