RNA–Protein interactions for RNA: YDR335W

MSN5, Transcript of Karyopherin, yeastyeast

Gene MSN5, Length 3,675 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSN5YDR335W DRS1P32892 752 aaKnown RBP3.88□□□□□ -1.79
MSN5YDR335W MTC1P47018 478 aaKnown RBP3.86□□□□□ -1.79
MSN5YDR335W FAP1P53971 965 aa3.73□□□□□ -1.81
MSN5YDR335W PRY3P47033 881 aa3.45□□□□□ -1.86
MSN5YDR335W BFR2Q06631 534 aaKnown RBP3.3□□□□□ -1.88
MSN5YDR335W DIP2Q12220 943 aaPredicted RBP3.29□□□□□ -1.88
MSN5YDR335W ISW2Q08773 1120 aa3.28□□□□□ -1.89
MSN5YDR335W RPG1P38249 964 aaKnown RBP3.27□□□□□ -1.89
MSN5YDR335W AAD16Q02895 342 aa3.26□□□□□ -1.89
MSN5YDR335W TSR3Q12094 313 aaKnown RBP3.21□□□□□ -1.9
MSN5YDR335W AVT3P36062 692 aa3.2□□□□□ -1.9
MSN5YDR335W REB1P21538 810 aa3.17□□□□□ -1.9
MSN5YDR335W RSE1Q04693 1361 aaKnown RBP3.17□□□□□ -1.9
MSN5YDR335W PRI1P10363 409 aa3.15□□□□□ -1.9
MSN5YDR335W RPL17AP05740 184 aaKnown RBP3.14□□□□□ -1.91
MSN5YDR335W RPL17BP46990 184 aaKnown RBP3.14□□□□□ -1.91
MSN5YDR335W YCK3P39962 524 aa3.11□□□□□ -1.91
MSN5YDR335W MRPL32P25348 183 aa3.07□□□□□ -1.92
MSN5YDR335W HAA1Q12753 694 aaKnown RBP3.05□□□□□ -1.92
MSN5YDR335W DCD1P06773 312 aa2.97□□□□□ -1.93
MSN5YDR335W TFA1P36100 482 aa2.92□□□□□ -1.94
MSN5YDR335W HOP09932 586 aa2.89□□□□□ -1.95
MSN5YDR335W SPT21P35209 758 aa2.89□□□□□ -1.95
MSN5YDR335W YAH1Q12184 172 aaKnown RBP2.88□□□□□ -1.95
MSN5YDR335W CDC27P38042 758 aa2.87□□□□□ -1.95
MSN5YDR335W RQC2Q12532 1038 aaKnown RBP2.87□□□□□ -1.95
MSN5YDR335W YKR023WP36119 530 aaKnown RBP2.86□□□□□ -1.95
MSN5YDR335W PTP3P40048 928 aa2.84□□□□□ -1.95
MSN5YDR335W YIL055CP40523 627 aaKnown RBP2.84□□□□□ -1.95
MSN5YDR335W OXP1P28273 1286 aa2.82□□□□□ -1.96
MSN5YDR335W YGL015CP33199 130 aa2.81□□□□□ -1.96
MSN5YDR335W SCY1P53009 804 aa2.79□□□□□ -1.96
MSN5YDR335W RIM101P33400 625 aa2.76□□□□□ -1.97
MSN5YDR335W MAP2P38174 421 aaKnown RBP2.75□□□□□ -1.97
MSN5YDR335W TFC8Q12308 588 aa2.74□□□□□ -1.97
MSN5YDR335W BCH2P36122 765 aa2.72□□□□□ -1.97
MSN5YDR335W MON2P48563 1636 aaPredicted RBP2.71□□□□□ -1.98
MSN5YDR335W YLR271WQ06152 274 aa2.71□□□□□ -1.98
MSN5YDR335W SLX5P32828 619 aaKnown RBP2.7□□□□□ -1.98
MSN5YDR335W CST9Q06032 482 aa2.69□□□□□ -1.98
MSN5YDR335W TAF7Q05021 590 aa2.68□□□□□ -1.98
MSN5YDR335W RCR1P38212 213 aa2.67□□□□□ -1.98
MSN5YDR335W BBC1P47068 1157 aa2.67□□□□□ -1.98
MSN5YDR335W TIF4632P39936 914 aaKnown RBP2.66□□□□□ -1.98
MSN5YDR335W PIB1Q06651 286 aa2.66□□□□□ -1.98
MSN5YDR335W ARP8Q12386 881 aaKnown RBP RIP-Chip data2.65□□□□□ -1.98not detected
MSN5YDR335W BUD31P25337 157 aaPredicted RBP2.65□□□□□ -1.99
MSN5YDR335W RSM7P47150 247 aa2.64□□□□□ -1.99
MSN5YDR335W BDF1P35817 686 aa2.62□□□□□ -1.99
MSN5YDR335W EPS1P40557 701 aa2.62□□□□□ -1.99
MSN5YDR335W UBP10P53874 792 aaPredicted RBP2.62□□□□□ -1.99
MSN5YDR335W WSC3Q12215 556 aa2.62□□□□□ -1.99
MSN5YDR335W AI2P03876 854 aa2.61□□□□□ -1.99
MSN5YDR335W SSP1P38871 571 aa2.61□□□□□ -1.99
MSN5YDR335W GTT3P39996 337 aa2.61□□□□□ -1.99
MSN5YDR335W DMA1P38823 416 aa2.6□□□□□ -1.99
MSN5YDR335W MRM1P25270 412 aa2.59□□□□□ -1.99
MSN5YDR335W SIS1P25294 352 aaKnown RBP2.58□□□□□ -2
MSN5YDR335W PSD2P53037 1138 aaKnown RBP2.57□□□□□ -2
MSN5YDR335W YFR006WP43590 535 aa2.56□□□□□ -2
MSN5YDR335W UBP9P39967 754 aa2.55□□□□□ -2
MSN5YDR335W YOR238WQ08634 303 aa2.52□□□□□ -2.01
MSN5YDR335W MIF2P35201 549 aa2.5□□□□□ -2.01
MSN5YDR335W STS1P38637 319 aa2.5□□□□□ -2.01
MSN5YDR335W YBL029C-AQ3E756 94 aa2.5□□□□□ -2.01
MSN5YDR335W RAM2P29703 316 aa2.49□□□□□ -2.01
MSN5YDR335W MGA2P40578 1113 aa2.48□□□□□ -2.01
MSN5YDR335W SET4P42948 560 aa2.48□□□□□ -2.01
MSN5YDR335W VPS29P38759 282 aa2.48□□□□□ -2.01
MSN5YDR335W YAP5P40574 245 aa2.48□□□□□ -2.01
MSN5YDR335W SPP1Q03012 353 aa2.48□□□□□ -2.01
MSN5YDR335W TGL3P40308 642 aa2.48□□□□□ -2.01
MSN5YDR335W DBP1P24784 617 aaKnown RBP2.47□□□□□ -2.01
MSN5YDR335W YJL171CP46992 396 aa2.46□□□□□ -2.02
MSN5YDR335W RTG3P38165 486 aa2.45□□□□□ -2.02
MSN5YDR335W DCW1P36091 449 aa2.44□□□□□ -2.02
MSN5YDR335W EDS1P38073 919 aa2.44□□□□□ -2.02
MSN5YDR335W TFG1P41895 735 aaPredicted RBP2.43□□□□□ -2.02
MSN5YDR335W ULI1P43604 169 aa2.42□□□□□ -2.02
MSN5YDR335W YDR344CQ05510 147 aa2.41□□□□□ -2.02
MSN5YDR335W YMR1P47147 688 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
MSN5YDR335W ATH1P48016 1211 aa2.39□□□□□ -2.03
MSN5YDR335W GYP5Q12344 894 aa2.39□□□□□ -2.03
MSN5YDR335W PEX29Q03370 554 aa2.39□□□□□ -2.03
MSN5YDR335W LEO1P38439 464 aa2.37□□□□□ -2.03
MSN5YDR335W VNX1P42839 908 aa2.37□□□□□ -2.03
MSN5YDR335W LDB19Q12502 818 aa2.37□□□□□ -2.03
MSN5YDR335W TY1B-DR4Q07793 1604 aa2.37□□□□□ -2.03
MSN5YDR335W TIF11P38912 153 aaKnown RBP2.36□□□□□ -2.03
MSN5YDR335W YOL036WQ08206 761 aa2.36□□□□□ -2.03
MSN5YDR335W GRE2Q12068 342 aaKnown RBP2.36□□□□□ -2.03
MSN5YDR335W VMA1P17255 1071 aaKnown RBP2.35□□□□□ -2.03
MSN5YDR335W SAP30P38429 201 aa2.35□□□□□ -2.03
MSN5YDR335W ILV3P39522 585 aaKnown RBP2.35□□□□□ -2.03
MSN5YDR335W COQ8P27697 501 aa2.35□□□□□ -2.03
MSN5YDR335W KOG1P38873 1557 aa2.35□□□□□ -2.03
MSN5YDR335W SOL3P38858 249 aa2.34□□□□□ -2.03
MSN5YDR335W DMA2P53924 522 aa2.34□□□□□ -2.04
MSN5YDR335W TRP5P00931 707 aaKnown RBP2.33□□□□□ -2.04
MSN5YDR335W RTG1P32607 177 aa2.33□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 29.6 ms