RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C MTC1P47018 478 aaKnown RBP14.85□□□□□ -0.03
RUB1YDR139C FAP1P53971 965 aa14.61□□□□□ -0.07
RUB1YDR139C PRY3P47033 881 aa13.82□□□□□ -0.2
RUB1YDR139C YCK3P39962 524 aa13.18□□□□□ -0.3
RUB1YDR139C AAD16Q02895 342 aa13.11□□□□□ -0.31
RUB1YDR139C PRI1P10363 409 aa13.1□□□□□ -0.31
RUB1YDR139C DRS1P32892 752 aaKnown RBP12.96□□□□□ -0.33
RUB1YDR139C HAA1Q12753 694 aaKnown RBP12.65□□□□□ -0.38
RUB1YDR139C RPG1P38249 964 aaKnown RBP12.52□□□□□ -0.41
RUB1YDR139C TSR3Q12094 313 aaKnown RBP12.5□□□□□ -0.41
RUB1YDR139C ISW2Q08773 1120 aa12.41□□□□□ -0.42
RUB1YDR139C MRPL32P25348 183 aa11.77□□□□□ -0.53
RUB1YDR139C DIP2Q12220 943 aaPredicted RBP11.7□□□□□ -0.54
RUB1YDR139C YGL015CP33199 130 aa11.49□□□□□ -0.57
RUB1YDR139C RSE1Q04693 1361 aaKnown RBP11.49□□□□□ -0.57
RUB1YDR139C RPL17AP05740 184 aaKnown RBP11.32□□□□□ -0.6
RUB1YDR139C RPL17BP46990 184 aaKnown RBP11.32□□□□□ -0.6
RUB1YDR139C REB1P21538 810 aa11.27□□□□□ -0.61
RUB1YDR139C CDC27P38042 758 aa11.24□□□□□ -0.61
RUB1YDR139C BUD31P25337 157 aaPredicted RBP11.03□□□□□ -0.64
RUB1YDR139C AVT3P36062 692 aa10.98□□□□□ -0.65
RUB1YDR139C MAP2P38174 421 aaKnown RBP10.95□□□□□ -0.66
RUB1YDR139C YKR023WP36119 530 aaKnown RBP10.92□□□□□ -0.66
RUB1YDR139C DCD1P06773 312 aa10.88□□□□□ -0.67
RUB1YDR139C BFR2Q06631 534 aaKnown RBP10.86□□□□□ -0.67
RUB1YDR139C HOP09932 586 aa10.78□□□□□ -0.68
RUB1YDR139C SPT21P35209 758 aa10.74□□□□□ -0.69
RUB1YDR139C UBP10P53874 792 aaPredicted RBP10.71□□□□□ -0.69
RUB1YDR139C TFC8Q12308 588 aa10.62□□□□□ -0.71
RUB1YDR139C SCY1P53009 804 aa10.53□□□□□ -0.72
RUB1YDR139C SIS1P25294 352 aaKnown RBP10.43□□□□□ -0.74
RUB1YDR139C SLX5P32828 619 aaKnown RBP10.31□□□□□ -0.76
RUB1YDR139C BCH2P36122 765 aa10.29□□□□□ -0.76
RUB1YDR139C TGL3P40308 642 aa10.25□□□□□ -0.77
RUB1YDR139C TIF4632P39936 914 aaKnown RBP10.24□□□□□ -0.77
RUB1YDR139C UBP9P39967 754 aa10.16□□□□□ -0.78
RUB1YDR139C TFA1P36100 482 aa10.11□□□□□ -0.79
RUB1YDR139C RIM101P33400 625 aa10.08□□□□□ -0.8
RUB1YDR139C YBL029C-AQ3E756 94 aa9.94□□□□□ -0.82
RUB1YDR139C EPS1P40557 701 aa9.92□□□□□ -0.82
RUB1YDR139C BDF1P35817 686 aa9.91□□□□□ -0.82
RUB1YDR139C OXP1P28273 1286 aa9.86□□□□□ -0.83
RUB1YDR139C MST1P07236 462 aa9.72□□□□□ -0.85
RUB1YDR139C VNX1P42839 908 aa9.68□□□□□ -0.86
RUB1YDR139C YOR238WQ08634 303 aa9.66□□□□□ -0.86
RUB1YDR139C WSC3Q12215 556 aa9.66□□□□□ -0.86
RUB1YDR139C PTP3P40048 928 aa9.64□□□□□ -0.87
RUB1YDR139C SPP1Q03012 353 aa9.56□□□□□ -0.88
RUB1YDR139C YIL055CP40523 627 aaKnown RBP9.52□□□□□ -0.89
RUB1YDR139C AIR2Q12476 344 aaKnown RBP9.49□□□□□ -0.89
RUB1YDR139C AI2P03876 854 aa9.47□□□□□ -0.89
RUB1YDR139C YAH1Q12184 172 aaKnown RBP9.47□□□□□ -0.89
RUB1YDR139C PIB1Q06651 286 aa9.45□□□□□ -0.9
RUB1YDR139C YAP5P40574 245 aa9.44□□□□□ -0.9
RUB1YDR139C RSM7P47150 247 aa9.42□□□□□ -0.9
RUB1YDR139C NSR1P27476 414 aaKnown RBP RIP-Chip data9.38□□□□□ -0.91 RIP-Chip
RUB1YDR139C FKH1P40466 484 aa9.38□□□□□ -0.91
RUB1YDR139C BBC1P47068 1157 aa9.37□□□□□ -0.91
RUB1YDR139C TIF11P38912 153 aaKnown RBP9.35□□□□□ -0.91
RUB1YDR139C YJL171CP46992 396 aa9.32□□□□□ -0.92
RUB1YDR139C LDB19Q12502 818 aa9.31□□□□□ -0.92
RUB1YDR139C GTT3P39996 337 aa9.27□□□□□ -0.93
RUB1YDR139C ULI1P43604 169 aa9.24□□□□□ -0.93
RUB1YDR139C IOC2Q12072 812 aa9.24□□□□□ -0.93
RUB1YDR139C YLR271WQ06152 274 aa9.2□□□□□ -0.94
RUB1YDR139C MRM1P25270 412 aa9.13□□□□□ -0.95
RUB1YDR139C BMT6Q12291 365 aa9.13□□□□□ -0.95
RUB1YDR139C PSD2P53037 1138 aaKnown RBP9.09□□□□□ -0.95
RUB1YDR139C SET4P42948 560 aa9.08□□□□□ -0.96
RUB1YDR139C YFR006WP43590 535 aa9.03□□□□□ -0.96
RUB1YDR139C RTG1P32607 177 aa9.02□□□□□ -0.97
RUB1YDR139C TRP5P00931 707 aaKnown RBP9.01□□□□□ -0.97
RUB1YDR139C YOL036WQ08206 761 aa9□□□□□ -0.97
RUB1YDR139C NCR1Q12200 1170 aa8.93□□□□□ -0.98
RUB1YDR139C DBP1P24784 617 aaKnown RBP8.92□□□□□ -0.98
RUB1YDR139C VPS29P38759 282 aa8.91□□□□□ -0.98
RUB1YDR139C CST9Q06032 482 aa8.9□□□□□ -0.98
RUB1YDR139C STS1P38637 319 aa8.89□□□□□ -0.99
RUB1YDR139C MSB4Q12317 492 aa8.88□□□□□ -0.99
RUB1YDR139C RCR1P38212 213 aa8.84□□□□□ -0.99
RUB1YDR139C VMA1P17255 1071 aaKnown RBP8.83□□□□□ -1
RUB1YDR139C EAP1P36041 632 aaKnown RBP8.83□□□□□ -1
RUB1YDR139C SSP1P38871 571 aa8.83□□□□□ -1
RUB1YDR139C YMR1P47147 688 aaKnown RBP RIP-Chip data8.81□□□□□ -1not detected
RUB1YDR139C YNL035CP53962 389 aaKnown RBP8.81□□□□□ -1
RUB1YDR139C SAP30P38429 201 aa8.79□□□□□ -1
RUB1YDR139C YDR344CQ05510 147 aa8.77□□□□□ -1.01
RUB1YDR139C SEC61P32915 480 aa8.75□□□□□ -1.01
RUB1YDR139C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.74□□□□□ -1.01not detected
RUB1YDR139C DAN4P47179 1161 aa8.73□□□□□ -1.01
RUB1YDR139C RTG3P38165 486 aa8.7□□□□□ -1.02
RUB1YDR139C SAM3Q08986 587 aa8.7□□□□□ -1.02
RUB1YDR139C DCW1P36091 449 aa8.65□□□□□ -1.02
RUB1YDR139C BCK2P33306 851 aa8.64□□□□□ -1.03
RUB1YDR139C TFG1P41895 735 aaPredicted RBP8.61□□□□□ -1.03
RUB1YDR139C GYP5Q12344 894 aa8.6□□□□□ -1.03
RUB1YDR139C YDL129WQ07555 291 aa8.59□□□□□ -1.03
RUB1YDR139C CHL1P22516 861 aaPredicted RBP8.55□□□□□ -1.04
RUB1YDR139C PRE3P38624 215 aa8.54□□□□□ -1.04
RUB1YDR139C YEL023CP39992 682 aa8.54□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 106.3 ms