RNA–Protein interactions for RNA: YBR260C

RGD1, Transcript of GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, yeastyeast

Gene RGD1, Length 2,001 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RGD1YBR260C BFR2Q06631 534 aaKnown RBP9.27□□□□□ -0.93
RGD1YBR260C NOP2P40991 618 aaKnown RBP9.05□□□□□ -0.96
RGD1YBR260C SPA2P23201 1466 aaKnown RBP8.95□□□□□ -0.98
RGD1YBR260C NSR1P27476 414 aaKnown RBP RIP-Chip data8.87□□□□□ -0.99not detected
RGD1YBR260C RQC2Q12532 1038 aaKnown RBP8.86□□□□□ -0.99
RGD1YBR260C SGS1P35187 1447 aa8.84□□□□□ -0.99
RGD1YBR260C SSN2P38931 1420 aa8.84□□□□□ -0.99
RGD1YBR260C SKI3P17883 1432 aaKnown RBP8.72□□□□□ -1.01
RGD1YBR260C DRS1P32892 752 aaKnown RBP8.61□□□□□ -1.03
RGD1YBR260C EBP2P36049 427 aaKnown RBP8.57□□□□□ -1.04
RGD1YBR260C CAB3P36076 571 aa8.55□□□□□ -1.04
RGD1YBR260C YPR148CQ06523 435 aa8.43□□□□□ -1.06
RGD1YBR260C RSE1Q04693 1361 aaKnown RBP8.38□□□□□ -1.07
RGD1YBR260C MMS22Q06164 1454 aa8.3□□□□□ -1.08
RGD1YBR260C INO80P53115 1489 aa8.29□□□□□ -1.08
RGD1YBR260C ENP1P38333 483 aaKnown RBP8.28□□□□□ -1.08
RGD1YBR260C SIS2P36024 562 aa8.24□□□□□ -1.09
RGD1YBR260C TCB3Q03640 1545 aaKnown RBP8.24□□□□□ -1.09
RGD1YBR260C CHD1P32657 1468 aa8.2□□□□□ -1.1
RGD1YBR260C UFD4P33202 1483 aa8.2□□□□□ -1.1
RGD1YBR260C URN1Q06525 465 aaKnown RBP8.17□□□□□ -1.1
RGD1YBR260C XRN1P22147 1528 aaKnown RBP8.14□□□□□ -1.11
RGD1YBR260C SPT7P35177 1332 aa8.14□□□□□ -1.11
RGD1YBR260C STH1P32597 1359 aa8.1□□□□□ -1.11
RGD1YBR260C TAF7Q05021 590 aa8.1□□□□□ -1.11
RGD1YBR260C MTC1P47018 478 aaKnown RBP8.09□□□□□ -1.11
RGD1YBR260C TRM732Q03496 1420 aa8.09□□□□□ -1.11
RGD1YBR260C MON2P48563 1636 aaPredicted RBP8.08□□□□□ -1.12
RGD1YBR260C AVT3P36062 692 aa8.08□□□□□ -1.12
RGD1YBR260C POL5P39985 1022 aaKnown RBP8.08□□□□□ -1.12
RGD1YBR260C PRS1P32895 427 aaKnown RBP8.05□□□□□ -1.12
RGD1YBR260C SPP41P38904 1435 aa8.04□□□□□ -1.12
RGD1YBR260C SAS10Q12136 610 aaPredicted RBP8.03□□□□□ -1.12
RGD1YBR260C IKI3Q06706 1349 aaKnown RBP8□□□□□ -1.13
RGD1YBR260C TCB2P48231 1178 aa7.98□□□□□ -1.13
RGD1YBR260C CLC1P17891 233 aa7.97□□□□□ -1.13
RGD1YBR260C SSM4P40318 1319 aa7.97□□□□□ -1.13
RGD1YBR260C IME2P32581 645 aa7.96□□□□□ -1.13
RGD1YBR260C ECM5Q03214 1411 aa7.96□□□□□ -1.14
RGD1YBR260C LEU3P08638 886 aa7.95□□□□□ -1.14
RGD1YBR260C CFT1Q06632 1357 aaKnown RBP7.94□□□□□ -1.14
RGD1YBR260C LEO1P38439 464 aa7.94□□□□□ -1.14
RGD1YBR260C SEC3P33332 1336 aaKnown RBP7.94□□□□□ -1.14
RGD1YBR260C YFR016CP43597 1233 aaKnown RBP7.93□□□□□ -1.14
RGD1YBR260C MYO2P19524 1574 aaKnown RBP7.93□□□□□ -1.14
RGD1YBR260C RTT106P40161 455 aa7.91□□□□□ -1.14
RGD1YBR260C TFA1P36100 482 aa7.91□□□□□ -1.14
RGD1YBR260C MNN4P36044 1178 aa7.89□□□□□ -1.15
RGD1YBR260C PDR10P51533 1564 aa7.88□□□□□ -1.15
RGD1YBR260C OPY1P38271 328 aa7.87□□□□□ -1.15
RGD1YBR260C HSL1P34244 1518 aa7.86□□□□□ -1.15
RGD1YBR260C STU1P38198 1513 aa7.85□□□□□ -1.15
RGD1YBR260C BPT1P14772 1559 aa7.83□□□□□ -1.16
RGD1YBR260C AIM44Q99299 758 aa7.83□□□□□ -1.16
RGD1YBR260C FUN12P39730 1002 aaKnown RBP7.83□□□□□ -1.16
RGD1YBR260C BUD4P47136 1447 aa7.82□□□□□ -1.16
RGD1YBR260C RPC31P17890 251 aa7.82□□□□□ -1.16
RGD1YBR260C SCC2Q04002 1493 aa7.82□□□□□ -1.16
RGD1YBR260C TAF2P23255 1407 aa7.81□□□□□ -1.16
RGD1YBR260C SPT6P23615 1451 aaKnown RBP7.81□□□□□ -1.16
RGD1YBR260C EAF7P53911 425 aaKnown RBP7.81□□□□□ -1.16
RGD1YBR260C NUP170P38181 1502 aa7.81□□□□□ -1.16
RGD1YBR260C TY1B-DR4Q07793 1604 aa7.8□□□□□ -1.16
RGD1YBR260C CWC22P53333 577 aaKnown RBP7.79□□□□□ -1.16
RGD1YBR260C SRB8P25648 1427 aa7.79□□□□□ -1.16
RGD1YBR260C PSD2P53037 1138 aaKnown RBP7.79□□□□□ -1.16
RGD1YBR260C PEP1P32319 1579 aa7.79□□□□□ -1.16
RGD1YBR260C REV3P14284 1504 aa7.79□□□□□ -1.16
RGD1YBR260C THO2P53552 1597 aaKnown RBP7.78□□□□□ -1.16
RGD1YBR260C HIR3P47171 1648 aa7.78□□□□□ -1.16
RGD1YBR260C YTA7P40340 1379 aa7.77□□□□□ -1.17
RGD1YBR260C SSK2P53599 1579 aa7.74□□□□□ -1.17
RGD1YBR260C MLP2P40457 1679 aa7.74□□□□□ -1.17
RGD1YBR260C FAP1P53971 965 aa7.74□□□□□ -1.17
RGD1YBR260C YLR419WQ06698 1435 aaKnown RBP7.72□□□□□ -1.17
RGD1YBR260C FPR3P38911 411 aaKnown RBP7.72□□□□□ -1.17
RGD1YBR260C SNF7P39929 240 aaKnown RBP7.72□□□□□ -1.17
RGD1YBR260C POL1P13382 1468 aa7.72□□□□□ -1.17
RGD1YBR260C RPS0BP46654 252 aaKnown RBP7.71□□□□□ -1.17
RGD1YBR260C PAN1P32521 1480 aa7.71□□□□□ -1.18
RGD1YBR260C SPT21P35209 758 aa7.71□□□□□ -1.18
RGD1YBR260C SIN3P22579 1536 aa7.7□□□□□ -1.18
RGD1YBR260C TOP2P06786 1428 aaKnown RBP7.7□□□□□ -1.18
RGD1YBR260C YGR130CP53278 816 aa7.69□□□□□ -1.18
RGD1YBR260C QCR6P00127 147 aa7.66□□□□□ -1.18
RGD1YBR260C IFH1P39520 1085 aa7.66□□□□□ -1.18
RGD1YBR260C ROX1P25042 368 aa7.65□□□□□ -1.18
RGD1YBR260C ESP1Q03018 1630 aa7.65□□□□□ -1.19
RGD1YBR260C YCF1P39109 1515 aaKnown RBP7.64□□□□□ -1.19
RGD1YBR260C DJP1P40564 432 aa7.64□□□□□ -1.19
RGD1YBR260C PAF1P38351 445 aa7.62□□□□□ -1.19
RGD1YBR260C SLN1P39928 1220 aaPredicted RBP7.62□□□□□ -1.19
RGD1YBR260C ENV11P53246 860 aa7.62□□□□□ -1.19
RGD1YBR260C TSC11P40061 1430 aa7.62□□□□□ -1.19
RGD1YBR260C ORC1P54784 914 aaPredicted RBP7.62□□□□□ -1.19
RGD1YBR260C MMS1Q06211 1407 aa7.62□□□□□ -1.19
RGD1YBR260C SMC4Q12267 1418 aa7.61□□□□□ -1.19
RGD1YBR260C CTR9P89105 1077 aa7.6□□□□□ -1.19
RGD1YBR260C SNQ2P32568 1501 aaKnown RBP7.6□□□□□ -1.19
RGD1YBR260C NAP1P25293 417 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms