RNA–Protein interactions for RNA: YBR175W

SWD3, Transcript of Essential subunit of the COMPASS (Set1C) complex, yeastyeast

Gene SWD3, Length 948 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SWD3YBR175W MTC1P47018 478 aaKnown RBP9.48□□□□□ -0.89
SWD3YBR175W FAP1P53971 965 aa8.78□□□□□ -1
SWD3YBR175W DRS1P32892 752 aaKnown RBP8.55□□□□□ -1.04
SWD3YBR175W PRY3P47033 881 aa8.27□□□□□ -1.09
SWD3YBR175W PRI1P10363 409 aa8.16□□□□□ -1.1
SWD3YBR175W AAD16Q02895 342 aa8.14□□□□□ -1.11
SWD3YBR175W ISW2Q08773 1120 aa7.9□□□□□ -1.14
SWD3YBR175W YCK3P39962 524 aa7.88□□□□□ -1.15
SWD3YBR175W RPG1P38249 964 aaKnown RBP7.83□□□□□ -1.16
SWD3YBR175W HAA1Q12753 694 aaKnown RBP7.79□□□□□ -1.16
SWD3YBR175W TSR3Q12094 313 aaKnown RBP7.67□□□□□ -1.18
SWD3YBR175W DIP2Q12220 943 aaPredicted RBP7.61□□□□□ -1.19
SWD3YBR175W RSE1Q04693 1361 aaKnown RBP7.44□□□□□ -1.22
SWD3YBR175W MRPL32P25348 183 aa7.37□□□□□ -1.23
SWD3YBR175W AVT3P36062 692 aa7.28□□□□□ -1.24
SWD3YBR175W RPL17AP05740 184 aaKnown RBP7.21□□□□□ -1.26
SWD3YBR175W RPL17BP46990 184 aaKnown RBP7.21□□□□□ -1.26
SWD3YBR175W REB1P21538 810 aa7.17□□□□□ -1.26
SWD3YBR175W YGL015CP33199 130 aa7.16□□□□□ -1.26
SWD3YBR175W CDC27P38042 758 aa6.97□□□□□ -1.29
SWD3YBR175W BFR2Q06631 534 aaKnown RBP6.96□□□□□ -1.3
SWD3YBR175W SPT21P35209 758 aa6.9□□□□□ -1.3
SWD3YBR175W YKR023WP36119 530 aaKnown RBP6.9□□□□□ -1.3
SWD3YBR175W UBP10P53874 792 aaPredicted RBP6.81□□□□□ -1.32
SWD3YBR175W MAP2P38174 421 aaKnown RBP6.78□□□□□ -1.32
SWD3YBR175W TFC8Q12308 588 aa6.75□□□□□ -1.33
SWD3YBR175W HOP09932 586 aa6.73□□□□□ -1.33
SWD3YBR175W BUD31P25337 157 aaPredicted RBP6.69□□□□□ -1.34
SWD3YBR175W DCD1P06773 312 aa6.68□□□□□ -1.34
SWD3YBR175W RIM101P33400 625 aa6.62□□□□□ -1.35
SWD3YBR175W SCY1P53009 804 aa6.57□□□□□ -1.36
SWD3YBR175W SLX5P32828 619 aaKnown RBP6.52□□□□□ -1.37
SWD3YBR175W BCH2P36122 765 aa6.52□□□□□ -1.37
SWD3YBR175W TGL3P40308 642 aa6.52□□□□□ -1.37
SWD3YBR175W TIF4632P39936 914 aaKnown RBP6.51□□□□□ -1.37
SWD3YBR175W OXP1P28273 1286 aa6.39□□□□□ -1.39
SWD3YBR175W UBP9P39967 754 aa6.38□□□□□ -1.39
SWD3YBR175W TFA1P36100 482 aa6.36□□□□□ -1.39
SWD3YBR175W SIS1P25294 352 aaKnown RBP6.32□□□□□ -1.4
SWD3YBR175W EPS1P40557 701 aa6.32□□□□□ -1.4
SWD3YBR175W BDF1P35817 686 aa6.31□□□□□ -1.4
SWD3YBR175W MST1P07236 462 aa6.25□□□□□ -1.41
SWD3YBR175W YIL055CP40523 627 aaKnown RBP6.25□□□□□ -1.41
SWD3YBR175W PTP3P40048 928 aa6.23□□□□□ -1.41
SWD3YBR175W RSM7P47150 247 aa6.19□□□□□ -1.42
SWD3YBR175W YOR238WQ08634 303 aa6.17□□□□□ -1.42
SWD3YBR175W NSR1P27476 414 aaKnown RBP RIP-Chip data6.16□□□□□ -1.42not detected
SWD3YBR175W BBC1P47068 1157 aa6.15□□□□□ -1.42
SWD3YBR175W AI2P03876 854 aa6.14□□□□□ -1.43
SWD3YBR175W YBL029C-AQ3E756 94 aa6.12□□□□□ -1.43
SWD3YBR175W YAH1Q12184 172 aaKnown RBP6.1□□□□□ -1.43
SWD3YBR175W YAP5P40574 245 aa6.08□□□□□ -1.44
SWD3YBR175W VNX1P42839 908 aa6.08□□□□□ -1.44
SWD3YBR175W YLR271WQ06152 274 aa6.03□□□□□ -1.44
SWD3YBR175W SPP1Q03012 353 aa5.99□□□□□ -1.45
SWD3YBR175W PSD2P53037 1138 aaKnown RBP5.98□□□□□ -1.45
SWD3YBR175W WSC3Q12215 556 aa5.98□□□□□ -1.45
SWD3YBR175W TIF11P38912 153 aaKnown RBP5.94□□□□□ -1.46
SWD3YBR175W GTT3P39996 337 aa5.92□□□□□ -1.46
SWD3YBR175W AIR2Q12476 344 aaKnown RBP5.92□□□□□ -1.46
SWD3YBR175W RQC2Q12532 1038 aaKnown RBP5.92□□□□□ -1.46
SWD3YBR175W MRM1P25270 412 aa5.9□□□□□ -1.46
SWD3YBR175W FKH1P40466 484 aa5.89□□□□□ -1.47
SWD3YBR175W SSP1P38871 571 aa5.88□□□□□ -1.47
SWD3YBR175W PIB1Q06651 286 aa5.87□□□□□ -1.47
SWD3YBR175W IOC2Q12072 812 aa5.87□□□□□ -1.47
SWD3YBR175W ULI1P43604 169 aa5.86□□□□□ -1.47
SWD3YBR175W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.85□□□□□ -1.47not detected
SWD3YBR175W YJL171CP46992 396 aa5.84□□□□□ -1.47
SWD3YBR175W LDB19Q12502 818 aa5.84□□□□□ -1.47
SWD3YBR175W VPS29P38759 282 aa5.82□□□□□ -1.48
SWD3YBR175W MSB4Q12317 492 aa5.82□□□□□ -1.48
SWD3YBR175W YMR1P47147 688 aaKnown RBP RIP-Chip data5.79□□□□□ -1.48not detected
SWD3YBR175W CST9Q06032 482 aa5.79□□□□□ -1.48
SWD3YBR175W EAP1P36041 632 aaKnown RBP5.78□□□□□ -1.48
SWD3YBR175W DBP1P24784 617 aaKnown RBP5.77□□□□□ -1.49
SWD3YBR175W RTG3P38165 486 aa5.77□□□□□ -1.49
SWD3YBR175W MGA2P40578 1113 aa5.77□□□□□ -1.49
SWD3YBR175W YOL036WQ08206 761 aa5.77□□□□□ -1.49
SWD3YBR175W BMT6Q12291 365 aa5.76□□□□□ -1.49
SWD3YBR175W SET4P42948 560 aa5.74□□□□□ -1.49
SWD3YBR175W TRP5P00931 707 aaKnown RBP5.73□□□□□ -1.49
SWD3YBR175W STS1P38637 319 aa5.73□□□□□ -1.49
SWD3YBR175W YFR006WP43590 535 aa5.73□□□□□ -1.49
SWD3YBR175W SAM3Q08986 587 aa5.73□□□□□ -1.49
SWD3YBR175W VMA1P17255 1071 aaKnown RBP5.72□□□□□ -1.49
SWD3YBR175W RTG1P32607 177 aa5.72□□□□□ -1.49
SWD3YBR175W YNL035CP53962 389 aaKnown RBP5.7□□□□□ -1.5
SWD3YBR175W NCR1Q12200 1170 aa5.7□□□□□ -1.5
SWD3YBR175W SEC61P32915 480 aa5.68□□□□□ -1.5
SWD3YBR175W RCR1P38212 213 aa5.68□□□□□ -1.5
SWD3YBR175W DAN4P47179 1161 aa5.63□□□□□ -1.51
SWD3YBR175W ABP1P15891 592 aaKnown RBP5.61□□□□□ -1.51
SWD3YBR175W JIP4Q03361 876 aa5.61□□□□□ -1.51
SWD3YBR175W GYP5Q12344 894 aa5.61□□□□□ -1.51
SWD3YBR175W TFG1P41895 735 aaPredicted RBP5.59□□□□□ -1.51
SWD3YBR175W HTA1P04911 132 aaKnown RBP5.57□□□□□ -1.52
SWD3YBR175W HTA2P04912 132 aa5.57□□□□□ -1.52
SWD3YBR175W PTC4P38089 393 aa5.56□□□□□ -1.52
SWD3YBR175W SAP30P38429 201 aa5.56□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms