RNA–Protein interactions for RNA: ENST00000641828.1

CASC19-260, Transcript of cancer susceptibility 19, humanhuman

BASIC

Gene CASC19, Length 2,001 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC19-260ENST00000641828 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
CASC19-260ENST00000641828 AEBP2Q6ZN18 517 aaPredicted RBP16.99■□□□□ 0.31
CASC19-260ENST00000641828 PHF23Q9BUL5 403 aaPredicted RBP15.22■□□□□ 0.03
CASC19-260ENST00000641828 SENP3Q9H4L4 574 aaPredicted RBP14.3□□□□□ -0.12
CASC19-260ENST00000641828 PLPPR3Q6T4P5 718 aa14.26□□□□□ -0.13
CASC19-260ENST00000641828 ADRA2BP18089 450 aa13.35□□□□□ -0.27
CASC19-260ENST00000641828 PPP6R1Q9UPN7 881 aa13.22□□□□□ -0.29
CASC19-260ENST00000641828 FOXD1Q16676 465 aa13.2□□□□□ -0.3
CASC19-260ENST00000641828 KCNA4P22459 653 aa13.1□□□□□ -0.31
CASC19-260ENST00000641828 EHMT2Q96KQ7 1210 aa12.98□□□□□ -0.33
CASC19-260ENST00000641828 PPP4R3CPQ6ZMV5 832 aa12.65□□□□□ -0.38
CASC19-260ENST00000641828 PIAS4Q8N2W9 510 aaPredicted RBP12.62□□□□□ -0.39
CASC19-260ENST00000641828 SLC4A1APQ9BWU0 796 aaKnown RBP12.58□□□□□ -0.4
CASC19-260ENST00000641828 CSRNP3Q8WYN3 585 aa12.52□□□□□ -0.4
CASC19-260ENST00000641828 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
CASC19-260ENST00000641828 NPM3O75607 178 aaKnown RBP12.33□□□□□ -0.43
CASC19-260ENST00000641828 POTEDQ86YR6 584 aa12.33□□□□□ -0.43
CASC19-260ENST00000641828 CNKSR2Q8WXI2 1034 aa12.15□□□□□ -0.46
CASC19-260ENST00000641828 SCAF1Q9H7N4 1312 aaKnown RBP12.09□□□□□ -0.47
CASC19-260ENST00000641828 ZBTB22O15209 634 aa12.08□□□□□ -0.48
CASC19-260ENST00000641828 MSH5O43196 834 aa11.91□□□□□ -0.5
CASC19-260ENST00000641828 FOXD4L1Q9NU39 408 aa11.86□□□□□ -0.51
CASC19-260ENST00000641828 DNAJC5BQ9UF47 199 aa11.85□□□□□ -0.51
CASC19-260ENST00000641828 MAPK8IP2Q13387 824 aaPredicted RBP11.82□□□□□ -0.52
CASC19-260ENST00000641828 RNF216Q9NWF9 866 aaPredicted RBP11.76□□□□□ -0.53
CASC19-260ENST00000641828 HOXD11P31277 338 aaPredicted RBP11.53□□□□□ -0.56
CASC19-260ENST00000641828 DMRT2Q9Y5R5 561 aa11.52□□□□□ -0.56
CASC19-260ENST00000641828 SLC4A2P04920 1241 aa11.48□□□□□ -0.57
CASC19-260ENST00000641828 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
CASC19-260ENST00000641828 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
CASC19-260ENST00000641828 ATXN8OSP0DMR3 200 aa11.38□□□□□ -0.59
CASC19-260ENST00000641828 MYCNP04198 464 aaPredicted RBP11.37□□□□□ -0.59
CASC19-260ENST00000641828 SLC24A1O60721 1099 aa11.35□□□□□ -0.59
CASC19-260ENST00000641828 FKBP8Q14318 412 aa11.28□□□□□ -0.6
CASC19-260ENST00000641828 NISCHQ9Y2I1 1504 aa11.22□□□□□ -0.61
CASC19-260ENST00000641828 ABCC9O60706 1549 aa11.04□□□□□ -0.64
CASC19-260ENST00000641828 ATF5Q9Y2D1 282 aaPredicted RBP11.04□□□□□ -0.64
CASC19-260ENST00000641828 DCAF8L1A6NGE4 600 aa11□□□□□ -0.65
CASC19-260ENST00000641828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.99□□□□□ -0.65
CASC19-260ENST00000641828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.96□□□□□ -0.65
CASC19-260ENST00000641828 HNRNPUL2Q1KMD3 747 aaKnown RBP10.96□□□□□ -0.65
CASC19-260ENST00000641828 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.66
CASC19-260ENST00000641828 U3KPZ7 1027 aaPredicted RBP10.9□□□□□ -0.66
CASC19-260ENST00000641828 ZNF219Q9P2Y4 722 aaPredicted RBP10.77□□□□□ -0.69
CASC19-260ENST00000641828 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
CASC19-260ENST00000641828 APLP2Q06481 763 aa10.68□□□□□ -0.7
CASC19-260ENST00000641828 SPDYE4A6NLX3 237 aa10.65□□□□□ -0.7
CASC19-260ENST00000641828 MKRN4PQ13434 485 aaPredicted RBP10.58□□□□□ -0.72
CASC19-260ENST00000641828 PROM2Q8N271 834 aa10.57□□□□□ -0.72
CASC19-260ENST00000641828 VASPP50552 380 aaPredicted RBP10.54□□□□□ -0.72
CASC19-260ENST00000641828 PLCB2Q00722 1185 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 FBLN2P98095 1184 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 DNAJC5Q9H3Z4 198 aa10.51□□□□□ -0.73
CASC19-260ENST00000641828 IFNLR1Q8IU57 520 aaPredicted RBP10.45□□□□□ -0.74
CASC19-260ENST00000641828 TRHP20396 242 aaPredicted RBP10.44□□□□□ -0.74
CASC19-260ENST00000641828 POLA2Q14181 598 aa10.41□□□□□ -0.74
CASC19-260ENST00000641828 SPINK5Q9NQ38 1064 aaPredicted RBP10.41□□□□□ -0.74
CASC19-260ENST00000641828 DCAF8L2P0C7V8 631 aa10.4□□□□□ -0.74
CASC19-260ENST00000641828 CCDC180Q9P1Z9 1646 aa10.39□□□□□ -0.75
CASC19-260ENST00000641828 HAP1P54257 671 aaPredicted RBP10.37□□□□□ -0.75
CASC19-260ENST00000641828 PKD2Q13563 968 aa10.34□□□□□ -0.75
CASC19-260ENST00000641828 CAPN15O75808 1086 aa10.33□□□□□ -0.76
CASC19-260ENST00000641828 RNF39Q9H2S5 420 aa10.28□□□□□ -0.76
CASC19-260ENST00000641828 ZBTB12Q9Y330 459 aaPredicted RBP10.28□□□□□ -0.76
CASC19-260ENST00000641828 RB1CC1Q8TDY2 1594 aa10.22□□□□□ -0.77
CASC19-260ENST00000641828 BCANQ96GW7 911 aa10.22□□□□□ -0.77
CASC19-260ENST00000641828 VSIG10Q8N0Z9 540 aa10.21□□□□□ -0.77
CASC19-260ENST00000641828 KLHL34Q8N239 644 aa10.21□□□□□ -0.78
CASC19-260ENST00000641828 SPOCK2Q92563 424 aa10.21□□□□□ -0.78
CASC19-260ENST00000641828 ABCB7O75027 752 aa10.2□□□□□ -0.78
CASC19-260ENST00000641828 C1QBPQ07021 282 aaKnown RBP10.18□□□□□ -0.78
CASC19-260ENST00000641828 PABPN1Q86U42 306 aaKnown RBP eCLIP10.18□□□□□ -0.78
CASC19-260ENST00000641828 ECM2O94769 699 aaPredicted RBP10.16□□□□□ -0.78
CASC19-260ENST00000641828 BBXQ8WY36 941 aaPredicted RBP10.15□□□□□ -0.78
CASC19-260ENST00000641828 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.15□□□□□ -0.78
CASC19-260ENST00000641828 STAG3Q9UJ98 1225 aa10.14□□□□□ -0.79
CASC19-260ENST00000641828 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
CASC19-260ENST00000641828 NPM1P06748 294 aaKnown RBP eCLIP10.11□□□□□ -0.79
CASC19-260ENST00000641828 PLCD3Q8N3E9 789 aa10.09□□□□□ -0.79
CASC19-260ENST00000641828 PAXIP1Q6ZW49 1069 aaPredicted RBP10.09□□□□□ -0.79
CASC19-260ENST00000641828 PRKCSHP14314 528 aaPredicted RBP10.08□□□□□ -0.8
CASC19-260ENST00000641828 TAOK2Q9UL54 1235 aa10.08□□□□□ -0.8
CASC19-260ENST00000641828 KDM2AQ9Y2K7 1162 aa10.07□□□□□ -0.8
CASC19-260ENST00000641828 CFAP44Q96MT7 982 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE2BA6NHP3 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE6P0CI01 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SPDYE2Q495Y8 402 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 SSUH2Q9Y2M2 353 aa10.06□□□□□ -0.8
CASC19-260ENST00000641828 RGL2O15211 777 aa10.05□□□□□ -0.8
CASC19-260ENST00000641828 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
CASC19-260ENST00000641828 MIER1Q8N108 512 aa10.03□□□□□ -0.8
CASC19-260ENST00000641828 UNC13AQ9UPW8 1703 aa10.01□□□□□ -0.81
CASC19-260ENST00000641828 CECR2Q9BXF3 1484 aa10.01□□□□□ -0.81
CASC19-260ENST00000641828 DSG3P32926 999 aa10□□□□□ -0.81
CASC19-260ENST00000641828 SPRYD3Q8NCJ5 442 aa9.98□□□□□ -0.81
CASC19-260ENST00000641828 NACADO15069 1562 aa9.97□□□□□ -0.81
CASC19-260ENST00000641828 CIZ1Q9ULV3 898 aaPredicted RBP9.94□□□□□ -0.82
CASC19-260ENST00000641828 CC2D2AQ9P2K1 1620 aa9.94□□□□□ -0.82
CASC19-260ENST00000641828 TPRNQ4KMQ1 711 aa9.94□□□□□ -0.82
CASC19-260ENST00000641828 TSHZ2Q9NRE2 1034 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms