RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-218ENST00000635120 DCAF8L2P0C7V8 631 aa15.42■□□□□ 0.06
CSMD1-218ENST00000635120 SUPT5HO00267 1087 aaKnown RBP14.73□□□□□ -0.05
CSMD1-218ENST00000635120 PELP1Q8IZL8 1130 aaKnown RBP14.67□□□□□ -0.06
CSMD1-218ENST00000635120 EHMT2Q96KQ7 1210 aa14.53□□□□□ -0.08
CSMD1-218ENST00000635120 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
CSMD1-218ENST00000635120 NISCHQ9Y2I1 1504 aa14.27□□□□□ -0.12
CSMD1-218ENST00000635120 APLP2Q06481 763 aa14.22□□□□□ -0.13
CSMD1-218ENST00000635120 TTBK1Q5TCY1 1321 aaPredicted RBP14.11□□□□□ -0.15
CSMD1-218ENST00000635120 ERICH6Q7L0X2 663 aa14.1□□□□□ -0.15
CSMD1-218ENST00000635120 PCGF6Q9BYE7 350 aa14.03□□□□□ -0.16
CSMD1-218ENST00000635120 CENPBP07199 599 aaPredicted RBP13.98□□□□□ -0.17
CSMD1-218ENST00000635120 MYT1Q01538 1121 aa13.97□□□□□ -0.17
CSMD1-218ENST00000635120 FAM9AQ8IZU1 332 aaPredicted RBP13.97□□□□□ -0.17
CSMD1-218ENST00000635120 CCER1Q8TC90 406 aaPredicted RBP13.96□□□□□ -0.17
CSMD1-218ENST00000635120 RANGAP1P46060 587 aaPredicted RBP13.83□□□□□ -0.2
CSMD1-218ENST00000635120 ZEB1P37275 1124 aaPredicted RBP13.79□□□□□ -0.2
CSMD1-218ENST00000635120 NEFLP07196 543 aa13.76□□□□□ -0.21
CSMD1-218ENST00000635120 YTHDC1Q96MU7 727 aaKnown RBP13.74□□□□□ -0.21
CSMD1-218ENST00000635120 ATP1B4Q9UN42 357 aaPredicted RBP13.68□□□□□ -0.22
CSMD1-218ENST00000635120 TRIM41Q8WV44 630 aa13.59□□□□□ -0.23
CSMD1-218ENST00000635120 UBTFP17480 764 aaKnown RBP13.56□□□□□ -0.24
CSMD1-218ENST00000635120 DAXXQ9UER7 740 aaPredicted RBP13.47□□□□□ -0.25
CSMD1-218ENST00000635120 PPARGC1BQ86YN6 1023 aaKnown RBP13.43□□□□□ -0.26
CSMD1-218ENST00000635120 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
CSMD1-218ENST00000635120 TRIM26Q12899 539 aaPredicted RBP13.26□□□□□ -0.29
CSMD1-218ENST00000635120 HRCP23327 699 aa13.23□□□□□ -0.29
CSMD1-218ENST00000635120 ITGAEP38570 1179 aa13.23□□□□□ -0.29
CSMD1-218ENST00000635120 CNGB1Q14028 1251 aaPredicted RBP13.2□□□□□ -0.3
CSMD1-218ENST00000635120 ZNF316A6NFI3 1004 aaPredicted RBP13.17□□□□□ -0.3
CSMD1-218ENST00000635120 MYT1LQ9UL68 1186 aa13.16□□□□□ -0.3
CSMD1-218ENST00000635120 RTL5Q5HYW3 569 aaPredicted RBP13.15□□□□□ -0.3
CSMD1-218ENST00000635120 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
CSMD1-218ENST00000635120 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
CSMD1-218ENST00000635120 CLSPNQ9HAW4 1339 aa13.08□□□□□ -0.32
CSMD1-218ENST00000635120 CHIC1Q5VXU3 224 aa13.07□□□□□ -0.32
CSMD1-218ENST00000635120 SLC4A1APQ9BWU0 796 aaKnown RBP13.07□□□□□ -0.32
CSMD1-218ENST00000635120 LOC105371045A0A1W2PR82 267 aa12.98□□□□□ -0.33
CSMD1-218ENST00000635120 DIEXFQ68CQ4 756 aaKnown RBP12.98□□□□□ -0.33
CSMD1-218ENST00000635120 BCANQ96GW7 911 aa12.9□□□□□ -0.34
CSMD1-218ENST00000635120 FAM50AQ14320 339 aaKnown RBP12.83□□□□□ -0.35
CSMD1-218ENST00000635120 GTF3C3Q9Y5Q9 886 aa12.79□□□□□ -0.36
CSMD1-218ENST00000635120 NEUROD1Q13562 356 aa12.78□□□□□ -0.36
CSMD1-218ENST00000635120 CDK11AQ9UQ88 783 aaPredicted RBP12.77□□□□□ -0.37
CSMD1-218ENST00000635120 ZBTB47Q9UFB7 747 aaPredicted RBP12.76□□□□□ -0.37
CSMD1-218ENST00000635120 TRIM52Q96A61 297 aa12.75□□□□□ -0.37
CSMD1-218ENST00000635120 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
CSMD1-218ENST00000635120 ZNF326Q5BKZ1 582 aaKnown RBP12.75□□□□□ -0.37
CSMD1-218ENST00000635120 ANP32CO43423 234 aa12.73□□□□□ -0.37
CSMD1-218ENST00000635120 CANXP27824 592 aaKnown RBP12.72□□□□□ -0.37
CSMD1-218ENST00000635120 SLC24A1O60721 1099 aa12.66□□□□□ -0.38
CSMD1-218ENST00000635120 ANP32AP39687 249 aaKnown RBP12.64□□□□□ -0.39
CSMD1-218ENST00000635120 EIF5BO60841 1220 aaKnown RBP12.63□□□□□ -0.39
CSMD1-218ENST00000635120 NPM2Q86SE8 214 aaKnown RBP12.59□□□□□ -0.39
CSMD1-218ENST00000635120 NEFMP07197 916 aa12.52□□□□□ -0.4
CSMD1-218ENST00000635120 ANP32BQ92688 251 aaKnown RBP12.51□□□□□ -0.41
CSMD1-218ENST00000635120 ACIN1Q9UKV3 1341 aaKnown RBP12.51□□□□□ -0.41
CSMD1-218ENST00000635120 HSP90AA1P07900 732 aaKnown RBP12.5□□□□□ -0.41
CSMD1-218ENST00000635120 ARID3CA6NKF2 412 aa12.41□□□□□ -0.42
CSMD1-218ENST00000635120 FBLN2P98095 1184 aa12.41□□□□□ -0.42
CSMD1-218ENST00000635120 FKBP8Q14318 412 aa12.39□□□□□ -0.43
CSMD1-218ENST00000635120 UPF2Q9HAU5 1272 aaKnown RBP12.39□□□□□ -0.43
CSMD1-218ENST00000635120 GLIPR1L2Q4G1C9 344 aa12.38□□□□□ -0.43
CSMD1-218ENST00000635120 NBR1Q14596 966 aa12.38□□□□□ -0.43
CSMD1-218ENST00000635120 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
CSMD1-218ENST00000635120 ARXQ96QS3 562 aa12.36□□□□□ -0.43
CSMD1-218ENST00000635120 ABCC9O60706 1549 aa12.36□□□□□ -0.43
CSMD1-218ENST00000635120 P3H3Q8IVL6 736 aa12.34□□□□□ -0.43
CSMD1-218ENST00000635120 TONSLQ96HA7 1378 aa12.32□□□□□ -0.44
CSMD1-218ENST00000635120 HNRNPUQ00839 825 aaKnown RBP eCLIP12.32□□□□□ -0.44
CSMD1-218ENST00000635120 ZNF777Q9ULD5 760 aaPredicted RBP12.32□□□□□ -0.44
CSMD1-218ENST00000635120 SCAF1Q9H7N4 1312 aaKnown RBP12.31□□□□□ -0.44
CSMD1-218ENST00000635120 FAM9BQ8IZU0 186 aa12.28□□□□□ -0.44
CSMD1-218ENST00000635120 CCDC136Q96JN2 1154 aa12.27□□□□□ -0.45
CSMD1-218ENST00000635120 SCRIBQ14160 1630 aa12.26□□□□□ -0.45
CSMD1-218ENST00000635120 SALL2Q9Y467 1007 aaPredicted RBP12.25□□□□□ -0.45
CSMD1-218ENST00000635120 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.23□□□□□ -0.45
CSMD1-218ENST00000635120 DDX10Q13206 875 aaKnown RBP12.23□□□□□ -0.45
CSMD1-218ENST00000635120 ESF1Q9H501 851 aaKnown RBP12.21□□□□□ -0.46
CSMD1-218ENST00000635120 STAG3Q9UJ98 1225 aa12.2□□□□□ -0.46
CSMD1-218ENST00000635120 CHGAP10645 457 aaKnown RBP12.2□□□□□ -0.46
CSMD1-218ENST00000635120 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
CSMD1-218ENST00000635120 DCAF1Q9Y4B6 1507 aa12.18□□□□□ -0.46
CSMD1-218ENST00000635120 TMC1Q8TDI8 760 aa12.17□□□□□ -0.46
CSMD1-218ENST00000635120 IRX6P78412 446 aaPredicted RBP12.17□□□□□ -0.46
CSMD1-218ENST00000635120 MYH16Q9H6N6 1097 aa12.15□□□□□ -0.46
CSMD1-218ENST00000635120 CSRNP3Q8WYN3 585 aa12.14□□□□□ -0.47
CSMD1-218ENST00000635120 WDR43Q15061 677 aaKnown RBP eCLIP12.14□□□□□ -0.47
CSMD1-218ENST00000635120 MRS2Q9HD23 443 aa12.13□□□□□ -0.47
CSMD1-218ENST00000635120 CDK11BP21127 795 aaKnown RBP12.12□□□□□ -0.47
CSMD1-218ENST00000635120 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.1□□□□□ -0.47
CSMD1-218ENST00000635120 BECN1Q14457 450 aa12.08□□□□□ -0.48
CSMD1-218ENST00000635120 RTN4Q9NQC3 1192 aaKnown RBP12.07□□□□□ -0.48
CSMD1-218ENST00000635120 CHIC2Q9UKJ5 165 aa12.06□□□□□ -0.48
CSMD1-218ENST00000635120 CCDC180Q9P1Z9 1646 aa12.06□□□□□ -0.48
CSMD1-218ENST00000635120 KDM2AQ9Y2K7 1162 aa12.06□□□□□ -0.48
CSMD1-218ENST00000635120 TRIM44Q96DX7 344 aaPredicted RBP12.06□□□□□ -0.48
CSMD1-218ENST00000635120 ANP32EQ9BTT0 268 aa12.05□□□□□ -0.48
CSMD1-218ENST00000635120 A0A0G2JS52 829 aa12.05□□□□□ -0.48
CSMD1-218ENST00000635120 DDRGK1Q96HY6 314 aa12.05□□□□□ -0.48
CSMD1-218ENST00000635120 MIER1Q8N108 512 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms