RNA–Protein interactions for RNA: ENST00000617087.1

PVT1-225, Transcript of Pvt1 oncogene, humanhuman

Gene PVT1, Length 130 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-225ENST00000617087 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
PVT1-225ENST00000617087 AEBP2Q6ZN18 517 aaPredicted RBP22.37■■□□□ 1.17
PVT1-225ENST00000617087 PHF23Q9BUL5 403 aaPredicted RBP19.87■□□□□ 0.77
PVT1-225ENST00000617087 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
PVT1-225ENST00000617087 PLPPR3Q6T4P5 718 aa18.54■□□□□ 0.56
PVT1-225ENST00000617087 FOXD1Q16676 465 aa17.42■□□□□ 0.38
PVT1-225ENST00000617087 ADRA2BP18089 450 aa17.36■□□□□ 0.37
PVT1-225ENST00000617087 PPP6R1Q9UPN7 881 aa17.31■□□□□ 0.36
PVT1-225ENST00000617087 KCNA4P22459 653 aa16.81■□□□□ 0.28
PVT1-225ENST00000617087 PIAS4Q8N2W9 510 aaPredicted RBP16.55■□□□□ 0.24
PVT1-225ENST00000617087 PPP4R3CPQ6ZMV5 832 aa16.43■□□□□ 0.22
PVT1-225ENST00000617087 EHMT2Q96KQ7 1210 aa16.39■□□□□ 0.21
PVT1-225ENST00000617087 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
PVT1-225ENST00000617087 SLC4A1APQ9BWU0 796 aaKnown RBP16.11■□□□□ 0.17
PVT1-225ENST00000617087 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
PVT1-225ENST00000617087 NPM3O75607 178 aaKnown RBP15.96■□□□□ 0.15
PVT1-225ENST00000617087 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
PVT1-225ENST00000617087 SCAF1Q9H7N4 1312 aaKnown RBP15.8■□□□□ 0.12
PVT1-225ENST00000617087 MSH5O43196 834 aa15.78■□□□□ 0.12
PVT1-225ENST00000617087 MAPK8IP2Q13387 824 aaPredicted RBP15.51■□□□□ 0.07
PVT1-225ENST00000617087 ZBTB22O15209 634 aa15.5■□□□□ 0.07
PVT1-225ENST00000617087 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
PVT1-225ENST00000617087 RNF216Q9NWF9 866 aaPredicted RBP15.35■□□□□ 0.05
PVT1-225ENST00000617087 FOXD4L1Q9NU39 408 aa15.27■□□□□ 0.04
PVT1-225ENST00000617087 DMRT2Q9Y5R5 561 aa15.16■□□□□ 0.02
PVT1-225ENST00000617087 HOXD11P31277 338 aaPredicted RBP15.13■□□□□ 0.01
PVT1-225ENST00000617087 SLC4A2P04920 1241 aa14.93□□□□□ -0.02
PVT1-225ENST00000617087 MYCNP04198 464 aaPredicted RBP14.72□□□□□ -0.05
PVT1-225ENST00000617087 ATXN8OSP0DMR3 200 aa14.7□□□□□ -0.06
PVT1-225ENST00000617087 DCAF8L1A6NGE4 600 aa14.39□□□□□ -0.11
PVT1-225ENST00000617087 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.36□□□□□ -0.11
PVT1-225ENST00000617087 FKBP8Q14318 412 aa14.34□□□□□ -0.11
PVT1-225ENST00000617087 ATF5Q9Y2D1 282 aaPredicted RBP14.3□□□□□ -0.12
PVT1-225ENST00000617087 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.26□□□□□ -0.13
PVT1-225ENST00000617087 HNRNPUL2Q1KMD3 747 aaKnown RBP14.26□□□□□ -0.13
PVT1-225ENST00000617087 AMER1Q5JTC6 1135 aaPredicted RBP14.26□□□□□ -0.13
PVT1-225ENST00000617087 SAMD1Q6SPF0 538 aaPredicted RBP14.25□□□□□ -0.13
PVT1-225ENST00000617087 RTN4Q9NQC3 1192 aaKnown RBP14.25□□□□□ -0.13
PVT1-225ENST00000617087 U3KPZ7 1027 aaPredicted RBP14.24□□□□□ -0.13
PVT1-225ENST00000617087 ZNF219Q9P2Y4 722 aaPredicted RBP13.97□□□□□ -0.17
PVT1-225ENST00000617087 SLC24A1O60721 1099 aa13.95□□□□□ -0.18
PVT1-225ENST00000617087 APLP2Q06481 763 aa13.94□□□□□ -0.18
PVT1-225ENST00000617087 MKRN4PQ13434 485 aaPredicted RBP13.72□□□□□ -0.21
PVT1-225ENST00000617087 SPDYE4A6NLX3 237 aa13.69□□□□□ -0.22
PVT1-225ENST00000617087 FBXO3Q9UK99 471 aa13.65□□□□□ -0.22
PVT1-225ENST00000617087 PROM2Q8N271 834 aa13.64□□□□□ -0.23
PVT1-225ENST00000617087 SPINK5Q9NQ38 1064 aaPredicted RBP13.64□□□□□ -0.23
PVT1-225ENST00000617087 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
PVT1-225ENST00000617087 FBLN2P98095 1184 aa13.61□□□□□ -0.23
PVT1-225ENST00000617087 RNF39Q9H2S5 420 aa13.61□□□□□ -0.23
PVT1-225ENST00000617087 POLA2Q14181 598 aa13.56□□□□□ -0.24
PVT1-225ENST00000617087 CAPN15O75808 1086 aa13.51□□□□□ -0.25
PVT1-225ENST00000617087 C1QBPQ07021 282 aaKnown RBP13.47□□□□□ -0.25
PVT1-225ENST00000617087 VASPP50552 380 aaPredicted RBP13.45□□□□□ -0.26
PVT1-225ENST00000617087 ZBTB12Q9Y330 459 aaPredicted RBP13.38□□□□□ -0.27
PVT1-225ENST00000617087 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
PVT1-225ENST00000617087 ABCB7O75027 752 aa13.32□□□□□ -0.28
PVT1-225ENST00000617087 POTEDQ86YR6 584 aa13.2□□□□□ -0.3
PVT1-225ENST00000617087 DSG3P32926 999 aa13.18□□□□□ -0.3
PVT1-225ENST00000617087 PLCB2Q00722 1185 aa13.16□□□□□ -0.3
PVT1-225ENST00000617087 PKD2Q13563 968 aa13.16□□□□□ -0.3
PVT1-225ENST00000617087 ZNF692Q9BU19 519 aaPredicted RBP13.14□□□□□ -0.31
PVT1-225ENST00000617087 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
PVT1-225ENST00000617087 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
PVT1-225ENST00000617087 SPDYE2Q495Y8 402 aa13.1□□□□□ -0.31
PVT1-225ENST00000617087 STAG3Q9UJ98 1225 aa13.09□□□□□ -0.31
PVT1-225ENST00000617087 SSUH2Q9Y2M2 353 aa13.09□□□□□ -0.31
PVT1-225ENST00000617087 OSCARQ8IYS5 282 aa13.07□□□□□ -0.32
PVT1-225ENST00000617087 SPOCK2Q92563 424 aa13.05□□□□□ -0.32
PVT1-225ENST00000617087 DCAF8L2P0C7V8 631 aa13.04□□□□□ -0.32
PVT1-225ENST00000617087 KLHL34Q8N239 644 aa13.03□□□□□ -0.32
PVT1-225ENST00000617087 PABPN1Q86U42 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
PVT1-225ENST00000617087 HAP1P54257 671 aaPredicted RBP12.94□□□□□ -0.34
PVT1-225ENST00000617087 PLCD3Q8N3E9 789 aa12.94□□□□□ -0.34
PVT1-225ENST00000617087 ECM2O94769 699 aaPredicted RBP12.92□□□□□ -0.34
PVT1-225ENST00000617087 MIER1Q8N108 512 aa12.9□□□□□ -0.34
PVT1-225ENST00000617087 BBXQ8WY36 941 aaPredicted RBP12.85□□□□□ -0.35
PVT1-225ENST00000617087 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
PVT1-225ENST00000617087 VSIG10Q8N0Z9 540 aa12.81□□□□□ -0.36
PVT1-225ENST00000617087 RGL2O15211 777 aa12.8□□□□□ -0.36
PVT1-225ENST00000617087 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.79□□□□□ -0.36
PVT1-225ENST00000617087 ZBTB47Q9UFB7 747 aaPredicted RBP12.77□□□□□ -0.37
PVT1-225ENST00000617087 PLEKHG5O94827 1062 aa12.76□□□□□ -0.37
PVT1-225ENST00000617087 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
PVT1-225ENST00000617087 PAXIP1Q6ZW49 1069 aaPredicted RBP12.71□□□□□ -0.37
PVT1-225ENST00000617087 CIZ1Q9ULV3 898 aaPredicted RBP12.71□□□□□ -0.37
PVT1-225ENST00000617087 BCANQ96GW7 911 aa12.67□□□□□ -0.38
PVT1-225ENST00000617087 CFAP44Q96MT7 982 aa12.66□□□□□ -0.38
PVT1-225ENST00000617087 TRIM41Q8WV44 630 aa12.65□□□□□ -0.38
PVT1-225ENST00000617087 KDM2AQ9Y2K7 1162 aa12.64□□□□□ -0.39
PVT1-225ENST00000617087 SPRYD3Q8NCJ5 442 aa12.62□□□□□ -0.39
PVT1-225ENST00000617087 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
PVT1-225ENST00000617087 GSE1Q14687 1217 aa12.56□□□□□ -0.4
PVT1-225ENST00000617087 NUBP1P53384 320 aa12.55□□□□□ -0.4
PVT1-225ENST00000617087 SPDYE1Q8NFV5 336 aaPredicted RBP12.54□□□□□ -0.4
PVT1-225ENST00000617087 AKT1S1Q96B36 256 aa12.53□□□□□ -0.4
PVT1-225ENST00000617087 TSHZ2Q9NRE2 1034 aa12.53□□□□□ -0.4
PVT1-225ENST00000617087 HS6ST3Q8IZP7 471 aa12.52□□□□□ -0.41
PVT1-225ENST00000617087 RNF25Q96BH1 459 aaPredicted RBP12.5□□□□□ -0.41
PVT1-225ENST00000617087 RBM42Q9BTD8 480 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms