RNA–Protein interactions for RNA: ENST00000598118.1

GRAMD1A-207, Transcript of GRAM domain containing 1A, humanhuman

TSL 1 (best)

Gene GRAMD1A, Length 2,277 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1A-207ENST00000598118 NISCHQ9Y2I1 1504 aa41.38■■■■■ 4.22
GRAMD1A-207ENST00000598118 CCDC180Q9P1Z9 1646 aa35.31■■■■□ 3.24
GRAMD1A-207ENST00000598118 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
GRAMD1A-207ENST00000598118 ZCCHC6Q5VYS8 1495 aaKnown RBP34.98■■■■□ 3.19
GRAMD1A-207ENST00000598118 SUPT5HO00267 1087 aaKnown RBP34.27■■■■□ 3.08
GRAMD1A-207ENST00000598118 DCAF8L2P0C7V8 631 aa34.21■■■■□ 3.07
GRAMD1A-207ENST00000598118 DCAF1Q9Y4B6 1507 aa33.98■■■■□ 3.03
GRAMD1A-207ENST00000598118 CHIC1Q5VXU3 224 aa33.3■■■□□ 2.92
GRAMD1A-207ENST00000598118 MYO15BQ96JP2 1530 aa33.16■■■□□ 2.9
GRAMD1A-207ENST00000598118 SCRIBQ14160 1630 aa33.01■■■□□ 2.87
GRAMD1A-207ENST00000598118 ABCC9O60706 1549 aa32.97■■■□□ 2.87
GRAMD1A-207ENST00000598118 RSF1Q96T23 1441 aaPredicted RBP32.66■■■□□ 2.82
GRAMD1A-207ENST00000598118 NACADO15069 1562 aa32.65■■■□□ 2.82
GRAMD1A-207ENST00000598118 RB1CC1Q8TDY2 1594 aa32.31■■■□□ 2.76
GRAMD1A-207ENST00000598118 CECR2Q9BXF3 1484 aa32.29■■■□□ 2.76
GRAMD1A-207ENST00000598118 LOC105371045A0A1W2PR82 267 aa32.29■■■□□ 2.76
GRAMD1A-207ENST00000598118 MROH2BQ7Z745 1585 aa32.17■■■□□ 2.74
GRAMD1A-207ENST00000598118 PCGF6Q9BYE7 350 aa32.02■■■□□ 2.72
GRAMD1A-207ENST00000598118 WIZO95785 1651 aa32■■■□□ 2.71
GRAMD1A-207ENST00000598118 TRIM41Q8WV44 630 aa31.95■■■□□ 2.7
GRAMD1A-207ENST00000598118 HRCP23327 699 aa31.92■■■□□ 2.7
GRAMD1A-207ENST00000598118 BAZ1AQ9NRL2 1556 aaPredicted RBP31.78■■■□□ 2.68
GRAMD1A-207ENST00000598118 UNC13AQ9UPW8 1703 aa31.78■■■□□ 2.68
GRAMD1A-207ENST00000598118 FAM9AQ8IZU1 332 aaPredicted RBP31.66■■■□□ 2.66
GRAMD1A-207ENST00000598118 SMARCA4P51532 1647 aa31.57■■■□□ 2.64
GRAMD1A-207ENST00000598118 EIF4G1Q04637 1599 aaKnown RBP31.53■■■□□ 2.64
GRAMD1A-207ENST00000598118 TOP2AP11388 1531 aaKnown RBP31.48■■■□□ 2.63
GRAMD1A-207ENST00000598118 TRIM26Q12899 539 aaPredicted RBP31.47■■■□□ 2.63
GRAMD1A-207ENST00000598118 EHMT2Q96KQ7 1210 aa31.37■■■□□ 2.61
GRAMD1A-207ENST00000598118 BICRAQ9NZM4 1560 aa31.34■■■□□ 2.61
GRAMD1A-207ENST00000598118 CCDC88BA6NC98 1476 aa31.33■■■□□ 2.61
GRAMD1A-207ENST00000598118 SMARCA2P51531 1590 aa31.32■■■□□ 2.6
GRAMD1A-207ENST00000598118 PPARGC1BQ86YN6 1023 aaKnown RBP31.29■■■□□ 2.6
GRAMD1A-207ENST00000598118 PABPN1Q86U42 306 aaKnown RBP eCLIP31.28■■■□□ 2.68e-7■■□□□ 12.6
GRAMD1A-207ENST00000598118 ABCC8Q09428 1581 aa31.2■■■□□ 2.58
GRAMD1A-207ENST00000598118 PEG3Q9GZU2 1588 aa30.99■■■□□ 2.55
GRAMD1A-207ENST00000598118 SOGA1O94964 1423 aa30.85■■■□□ 2.53
GRAMD1A-207ENST00000598118 ATAD2BQ9ULI0 1458 aa30.78■■■□□ 2.52
GRAMD1A-207ENST00000598118 RUSC2Q8N2Y8 1516 aa30.73■■■□□ 2.51
GRAMD1A-207ENST00000598118 WRNQ14191 1432 aaPredicted RBP eCLIP30.66■■■□□ 2.5
GRAMD1A-207ENST00000598118 ZEB1P37275 1124 aaPredicted RBP30.66■■■□□ 2.5
GRAMD1A-207ENST00000598118 BAZ1BQ9UIG0 1483 aaKnown RBP30.66■■■□□ 2.5
GRAMD1A-207ENST00000598118 EEA1Q15075 1411 aa30.64■■■□□ 2.5
GRAMD1A-207ENST00000598118 CSRNP3Q8WYN3 585 aa30.62■■■□□ 2.49
GRAMD1A-207ENST00000598118 CEP162Q5TB80 1403 aa30.6■■■□□ 2.49
GRAMD1A-207ENST00000598118 TNIKQ9UKE5 1360 aa30.58■■■□□ 2.49
GRAMD1A-207ENST00000598118 SYNJ1O43426 1573 aa30.57■■■□□ 2.48
GRAMD1A-207ENST00000598118 UBTFP17480 764 aaKnown RBP30.44■■■□□ 2.46
GRAMD1A-207ENST00000598118 GOLGA3Q08378 1498 aa30.43■■■□□ 2.46
GRAMD1A-207ENST00000598118 TTBK1Q5TCY1 1321 aaPredicted RBP30.31■■■□□ 2.44
GRAMD1A-207ENST00000598118 KIF21BO75037 1637 aa30.28■■■□□ 2.44
GRAMD1A-207ENST00000598118 CEP164Q9UPV0 1460 aa30.28■■■□□ 2.44
GRAMD1A-207ENST00000598118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.26■■■□□ 2.44
GRAMD1A-207ENST00000598118 NCAPD3P42695 1498 aa30.22■■■□□ 2.43
GRAMD1A-207ENST00000598118 TOP2BQ02880 1626 aa30.21■■■□□ 2.43
GRAMD1A-207ENST00000598118 HMGXB3Q12766 1538 aa30.2■■■□□ 2.43
GRAMD1A-207ENST00000598118 CCER1Q8TC90 406 aaPredicted RBP30.13■■■□□ 2.41
GRAMD1A-207ENST00000598118 BIVM-ERCC5R4GMW8 1640 aa30.13■■■□□ 2.41
GRAMD1A-207ENST00000598118 RAPGEF2Q9Y4G8 1499 aa30.11■■■□□ 2.41
GRAMD1A-207ENST00000598118 CLIP1P30622 1438 aa30.06■■■□□ 2.4
GRAMD1A-207ENST00000598118 CUX1P39880 1505 aa29.96■■■□□ 2.39
GRAMD1A-207ENST00000598118 VPS8Q8N3P4 1428 aa29.93■■■□□ 2.38
GRAMD1A-207ENST00000598118 CFTRP13569 1480 aa29.92■■■□□ 2.38
GRAMD1A-207ENST00000598118 RANGAP1P46060 587 aaPredicted RBP29.86■■■□□ 2.37
GRAMD1A-207ENST00000598118 PRXQ9BXM0 1461 aa29.85■■■□□ 2.37
GRAMD1A-207ENST00000598118 ERICH3Q5RHP9 1530 aa29.82■■■□□ 2.36
GRAMD1A-207ENST00000598118 PRDM2Q13029 1718 aa29.75■■■□□ 2.35
GRAMD1A-207ENST00000598118 KIF27Q86VH2 1401 aa29.72■■■□□ 2.35
GRAMD1A-207ENST00000598118 APLP2Q06481 763 aa29.68■■■□□ 2.34
GRAMD1A-207ENST00000598118 HNRNPUL2Q1KMD3 747 aaKnown RBP29.66■■■□□ 2.34
GRAMD1A-207ENST00000598118 ARAP1Q96P48 1450 aa29.65■■■□□ 2.34
GRAMD1A-207ENST00000598118 CADPSQ9ULU8 1353 aa29.6■■■□□ 2.33
GRAMD1A-207ENST00000598118 CC2D2AQ9P2K1 1620 aa29.56■■■□□ 2.32
GRAMD1A-207ENST00000598118 CUX2O14529 1486 aa29.48■■■□□ 2.31
GRAMD1A-207ENST00000598118 DIEXFQ68CQ4 756 aaKnown RBP29.45■■■□□ 2.3
GRAMD1A-207ENST00000598118 IGF1RP08069 1367 aa29.44■■■□□ 2.3
GRAMD1A-207ENST00000598118 KANK4Q5T7N3 995 aaPredicted RBP29.44■■■□□ 2.3
GRAMD1A-207ENST00000598118 FGD5Q6ZNL6 1462 aa29.43■■■□□ 2.3
GRAMD1A-207ENST00000598118 ARHGAP35Q9NRY4 1499 aa29.43■■■□□ 2.3
GRAMD1A-207ENST00000598118 FANCD2Q9BXW9 1451 aa29.31■■■□□ 2.28
GRAMD1A-207ENST00000598118 ZNF316A6NFI3 1004 aaPredicted RBP29.3■■■□□ 2.28
GRAMD1A-207ENST00000598118 CARMIL1Q5VZK9 1371 aa29.29■■■□□ 2.28
GRAMD1A-207ENST00000598118 SCAF1Q9H7N4 1312 aaKnown RBP29.28■■■□□ 2.28
GRAMD1A-207ENST00000598118 RRBP1Q9P2E9 1410 aaKnown RBP29.22■■■□□ 2.27
GRAMD1A-207ENST00000598118 NESP48681 1621 aa29.19■■■□□ 2.26
GRAMD1A-207ENST00000598118 DNMBPQ6XZF7 1577 aa29.18■■■□□ 2.26
GRAMD1A-207ENST00000598118 RAD54L2Q9Y4B4 1467 aa29.15■■■□□ 2.26
GRAMD1A-207ENST00000598118 TOPBP1Q92547 1522 aa29.13■■■□□ 2.25
GRAMD1A-207ENST00000598118 DHX57Q6P158 1386 aaKnown RBP29.12■■■□□ 2.25
GRAMD1A-207ENST00000598118 POLA1P09884 1462 aaPredicted RBP29.11■■■□□ 2.25
GRAMD1A-207ENST00000598118 ABCA10Q8WWZ4 1543 aa29.09■■■□□ 2.25
GRAMD1A-207ENST00000598118 CCNB3Q8WWL7 1395 aa29.08■■■□□ 2.25
GRAMD1A-207ENST00000598118 NEUROD1Q13562 356 aa29.08■■■□□ 2.25
GRAMD1A-207ENST00000598118 ACIN1Q9UKV3 1341 aaKnown RBP29.07■■■□□ 2.24
GRAMD1A-207ENST00000598118 TIAM1Q13009 1591 aa29.07■■■□□ 2.24
GRAMD1A-207ENST00000598118 MAP3K1Q13233 1512 aa29.03■■■□□ 2.24
GRAMD1A-207ENST00000598118 CLSPNQ9HAW4 1339 aa29.02■■■□□ 2.24
GRAMD1A-207ENST00000598118 P3H3Q8IVL6 736 aa28.96■■■□□ 2.23
GRAMD1A-207ENST00000598118 LRRC9Q6ZRR7 1453 aa28.95■■■□□ 2.23
GRAMD1A-207ENST00000598118 LAMC3Q9Y6N6 1575 aa28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms