RNA–Protein interactions for RNA: ENST00000578373.5

ERBB2-206, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 1 (best)

Gene ERBB2, Length 4,523 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-206ENST00000578373 DCAF8L2P0C7V8 631 aa21.07■□□□□ 0.96
ERBB2-206ENST00000578373 NISCHQ9Y2I1 1504 aa20.83■□□□□ 0.92
ERBB2-206ENST00000578373 SUPT5HO00267 1087 aaKnown RBP20.56■□□□□ 0.88
ERBB2-206ENST00000578373 SHROOM4Q9ULL8 1493 aa20.34■□□□□ 0.85
ERBB2-206ENST00000578373 EHMT2Q96KQ7 1210 aa19.89■□□□□ 0.77
ERBB2-206ENST00000578373 PCGF6Q9BYE7 350 aa19.49■□□□□ 0.71
ERBB2-206ENST00000578373 FAM9AQ8IZU1 332 aaPredicted RBP19.38■□□□□ 0.69
ERBB2-206ENST00000578373 TTBK1Q5TCY1 1321 aaPredicted RBP19.2■□□□□ 0.66
ERBB2-206ENST00000578373 PPARGC1BQ86YN6 1023 aaKnown RBP18.83■□□□□ 0.61
ERBB2-206ENST00000578373 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
ERBB2-206ENST00000578373 RANGAP1P46060 587 aaPredicted RBP18.77■□□□□ 0.59
ERBB2-206ENST00000578373 LOC105371045A0A1W2PR82 267 aa18.76■□□□□ 0.59
ERBB2-206ENST00000578373 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
ERBB2-206ENST00000578373 CCER1Q8TC90 406 aaPredicted RBP18.65■□□□□ 0.58
ERBB2-206ENST00000578373 HRCP23327 699 aa18.63■□□□□ 0.57
ERBB2-206ENST00000578373 APLP2Q06481 763 aa18.63■□□□□ 0.57
ERBB2-206ENST00000578373 ZEB1P37275 1124 aaPredicted RBP18.45■□□□□ 0.54
ERBB2-206ENST00000578373 YTHDC1Q96MU7 727 aaKnown RBP18.44■□□□□ 0.54
ERBB2-206ENST00000578373 UBTFP17480 764 aaKnown RBP18.43■□□□□ 0.54
ERBB2-206ENST00000578373 TRIM26Q12899 539 aaPredicted RBP18.42■□□□□ 0.54
ERBB2-206ENST00000578373 CENPBP07199 599 aaPredicted RBP18.35■□□□□ 0.53
ERBB2-206ENST00000578373 PELP1Q8IZL8 1130 aaKnown RBP18.28■□□□□ 0.52
ERBB2-206ENST00000578373 ATP1B4Q9UN42 357 aaPredicted RBP18.22■□□□□ 0.51
ERBB2-206ENST00000578373 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.15■□□□□ 0.5
ERBB2-206ENST00000578373 HNRNPUL2Q1KMD3 747 aaKnown RBP18.06■□□□□ 0.48
ERBB2-206ENST00000578373 ITGAEP38570 1179 aa18.01■□□□□ 0.47
ERBB2-206ENST00000578373 DIEXFQ68CQ4 756 aaKnown RBP17.83■□□□□ 0.44
ERBB2-206ENST00000578373 ERICH6Q7L0X2 663 aa17.73■□□□□ 0.43
ERBB2-206ENST00000578373 NEFLP07196 543 aa17.71■□□□□ 0.43
ERBB2-206ENST00000578373 CNGB1Q14028 1251 aaPredicted RBP17.69■□□□□ 0.42
ERBB2-206ENST00000578373 GTF3C3Q9Y5Q9 886 aa17.67■□□□□ 0.42
ERBB2-206ENST00000578373 ABCC9O60706 1549 aa17.64■□□□□ 0.41
ERBB2-206ENST00000578373 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.413e-9■□□□□ 10.8
ERBB2-206ENST00000578373 POLR3GLQ9BT43 218 aa17.55■□□□□ 0.4
ERBB2-206ENST00000578373 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.4
ERBB2-206ENST00000578373 BCANQ96GW7 911 aa17.46■□□□□ 0.39
ERBB2-206ENST00000578373 NEUROD1Q13562 356 aa17.42■□□□□ 0.38
ERBB2-206ENST00000578373 ACIN1Q9UKV3 1341 aaKnown RBP17.4■□□□□ 0.38
ERBB2-206ENST00000578373 FAM50AQ14320 339 aaKnown RBP17.4■□□□□ 0.38
ERBB2-206ENST00000578373 ZNF316A6NFI3 1004 aaPredicted RBP17.37■□□□□ 0.37
ERBB2-206ENST00000578373 MYT1Q01538 1121 aa17.34■□□□□ 0.37
ERBB2-206ENST00000578373 CSRNP3Q8WYN3 585 aa17.31■□□□□ 0.36
ERBB2-206ENST00000578373 ZCCHC6Q5VYS8 1495 aaKnown RBP17.3■□□□□ 0.36
ERBB2-206ENST00000578373 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.35
ERBB2-206ENST00000578373 DCAF1Q9Y4B6 1507 aa17.25■□□□□ 0.35
ERBB2-206ENST00000578373 P3H3Q8IVL6 736 aa17.23■□□□□ 0.35
ERBB2-206ENST00000578373 TRIM52Q96A61 297 aa17.15■□□□□ 0.34
ERBB2-206ENST00000578373 SCRIBQ14160 1630 aa17.14■□□□□ 0.33
ERBB2-206ENST00000578373 ARID3CA6NKF2 412 aa17.11■□□□□ 0.33
ERBB2-206ENST00000578373 ZNF326Q5BKZ1 582 aaKnown RBP17.07■□□□□ 0.32
ERBB2-206ENST00000578373 MYT1LQ9UL68 1186 aa17.06■□□□□ 0.32
ERBB2-206ENST00000578373 MIER1Q8N108 512 aa17.05■□□□□ 0.32
ERBB2-206ENST00000578373 ANP32CO43423 234 aa17.02■□□□□ 0.32
ERBB2-206ENST00000578373 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
ERBB2-206ENST00000578373 DDX10Q13206 875 aaKnown RBP16.98■□□□□ 0.31
ERBB2-206ENST00000578373 HIRIP3Q9BW71 556 aaPredicted RBP16.97■□□□□ 0.31
ERBB2-206ENST00000578373 FKBP8Q14318 412 aa16.93■□□□□ 0.3
ERBB2-206ENST00000578373 RSF1Q96T23 1441 aaPredicted RBP16.92■□□□□ 0.3
ERBB2-206ENST00000578373 DAXXQ9UER7 740 aaPredicted RBP16.92■□□□□ 0.3
ERBB2-206ENST00000578373 SLC4A1APQ9BWU0 796 aaKnown RBP16.88■□□□□ 0.29
ERBB2-206ENST00000578373 FBLN2P98095 1184 aa16.83■□□□□ 0.28
ERBB2-206ENST00000578373 CDK11AQ9UQ88 783 aaPredicted RBP16.82■□□□□ 0.28
ERBB2-206ENST00000578373 RTL5Q5HYW3 569 aaPredicted RBP16.79■□□□□ 0.28
ERBB2-206ENST00000578373 CLSPNQ9HAW4 1339 aa16.78■□□□□ 0.28
ERBB2-206ENST00000578373 HNRNPUQ00839 825 aaKnown RBP eCLIP16.77■□□□□ 0.28
ERBB2-206ENST00000578373 IRX6P78412 446 aaPredicted RBP16.76■□□□□ 0.27
ERBB2-206ENST00000578373 CHIC2Q9UKJ5 165 aa16.76■□□□□ 0.27
ERBB2-206ENST00000578373 CEP162Q5TB80 1403 aa16.74■□□□□ 0.27
ERBB2-206ENST00000578373 ZNF777Q9ULD5 760 aaPredicted RBP16.74■□□□□ 0.27
ERBB2-206ENST00000578373 FAM9BQ8IZU0 186 aa16.73■□□□□ 0.27
ERBB2-206ENST00000578373 SENP3-EIF4A1A0A087X0R7 540 aa16.72■□□□□ 0.27
ERBB2-206ENST00000578373 CLIP1P30622 1438 aa16.71■□□□□ 0.27
ERBB2-206ENST00000578373 SALL2Q9Y467 1007 aaPredicted RBP16.7■□□□□ 0.26
ERBB2-206ENST00000578373 TONSLQ96HA7 1378 aa16.67■□□□□ 0.26
ERBB2-206ENST00000578373 CECR2Q9BXF3 1484 aa16.65■□□□□ 0.26
ERBB2-206ENST00000578373 NPM2Q86SE8 214 aaKnown RBP16.65■□□□□ 0.26
ERBB2-206ENST00000578373 BCL11AQ9H165 835 aa16.62■□□□□ 0.25
ERBB2-206ENST00000578373 SIN3AQ96ST3 1273 aa16.57■□□□□ 0.24
ERBB2-206ENST00000578373 SOGA1O94964 1423 aa16.56■□□□□ 0.24
ERBB2-206ENST00000578373 RRP7BPQ9NSQ0 103 aa16.53■□□□□ 0.24
ERBB2-206ENST00000578373 MRS2Q9HD23 443 aa16.5■□□□□ 0.23
ERBB2-206ENST00000578373 TNIKQ9UKE5 1360 aa16.5■□□□□ 0.23
ERBB2-206ENST00000578373 WRNQ14191 1432 aaPredicted RBP eCLIP16.49■□□□□ 0.23
ERBB2-206ENST00000578373 GOLGA3Q08378 1498 aa16.49■□□□□ 0.23
ERBB2-206ENST00000578373 NBR1Q14596 966 aa16.49■□□□□ 0.23
ERBB2-206ENST00000578373 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
ERBB2-206ENST00000578373 KDM2AQ9Y2K7 1162 aa16.47■□□□□ 0.23
ERBB2-206ENST00000578373 ANP32AP39687 249 aaKnown RBP16.46■□□□□ 0.23
ERBB2-206ENST00000578373 MTUS2Q5JR59 1369 aa16.43■□□□□ 0.22
ERBB2-206ENST00000578373 SUPT16HQ9Y5B9 1047 aaKnown RBP16.42■□□□□ 0.22
ERBB2-206ENST00000578373 CCDC136Q96JN2 1154 aa16.41■□□□□ 0.22
ERBB2-206ENST00000578373 TMC1Q8TDI8 760 aa16.4■□□□□ 0.22
ERBB2-206ENST00000578373 CANXP27824 592 aaKnown RBP16.4■□□□□ 0.22
ERBB2-206ENST00000578373 KANK4Q5T7N3 995 aaPredicted RBP16.39■□□□□ 0.21
ERBB2-206ENST00000578373 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.21
ERBB2-206ENST00000578373 ABCC8Q09428 1581 aa16.37■□□□□ 0.21
ERBB2-206ENST00000578373 CCDC88BA6NC98 1476 aa16.37■□□□□ 0.21
ERBB2-206ENST00000578373 EEA1Q15075 1411 aa16.36■□□□□ 0.21
ERBB2-206ENST00000578373 MROH2BQ7Z745 1585 aa16.35■□□□□ 0.21
ERBB2-206ENST00000578373 EIF4G2P78344 907 aaKnown RBP eCLIP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms