RNA–Protein interactions for RNA: ENST00000564747.1

GTF3C1-205, Transcript of general transcription factor IIIC subunit 1, humanhuman

Gene GTF3C1, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-205ENST00000564747 NISCHQ9Y2I1 1504 aa31.75■■■□□ 2.67
GTF3C1-205ENST00000564747 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
GTF3C1-205ENST00000564747 ZCCHC6Q5VYS8 1495 aaKnown RBP26.87■■□□□ 1.89
GTF3C1-205ENST00000564747 CCDC180Q9P1Z9 1646 aa26.85■■□□□ 1.89
GTF3C1-205ENST00000564747 SUPT5HO00267 1087 aaKnown RBP26.82■■□□□ 1.88
GTF3C1-205ENST00000564747 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
GTF3C1-205ENST00000564747 CHIC1Q5VXU3 224 aa26.11■■□□□ 1.77
GTF3C1-205ENST00000564747 MYO15BQ96JP2 1530 aa26.03■■□□□ 1.76
GTF3C1-205ENST00000564747 DCAF1Q9Y4B6 1507 aa25.99■■□□□ 1.75
GTF3C1-205ENST00000564747 HRCP23327 699 aa25.51■■□□□ 1.67
GTF3C1-205ENST00000564747 PCGF6Q9BYE7 350 aa25.46■■□□□ 1.67
GTF3C1-205ENST00000564747 LOC105371045A0A1W2PR82 267 aa25.4■■□□□ 1.66
GTF3C1-205ENST00000564747 ABCC9O60706 1549 aa25.35■■□□□ 1.65
GTF3C1-205ENST00000564747 SCRIBQ14160 1630 aa25.29■■□□□ 1.64
GTF3C1-205ENST00000564747 RSF1Q96T23 1441 aaPredicted RBP25.21■■□□□ 1.63
GTF3C1-205ENST00000564747 PPARGC1BQ86YN6 1023 aaKnown RBP25.02■■□□□ 1.6
GTF3C1-205ENST00000564747 RB1CC1Q8TDY2 1594 aa24.95■■□□□ 1.58
GTF3C1-205ENST00000564747 TRIM41Q8WV44 630 aa24.94■■□□□ 1.58
GTF3C1-205ENST00000564747 TRIM26Q12899 539 aaPredicted RBP24.9■■□□□ 1.58
GTF3C1-205ENST00000564747 NACADO15069 1562 aa24.83■■□□□ 1.57
GTF3C1-205ENST00000564747 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
GTF3C1-205ENST00000564747 FAM9AQ8IZU1 332 aaPredicted RBP24.79■■□□□ 1.56
GTF3C1-205ENST00000564747 MROH2BQ7Z745 1585 aa24.72■■□□□ 1.55
GTF3C1-205ENST00000564747 EHMT2Q96KQ7 1210 aa24.61■■□□□ 1.53
GTF3C1-205ENST00000564747 WIZO95785 1651 aa24.59■■□□□ 1.53
GTF3C1-205ENST00000564747 BAZ1AQ9NRL2 1556 aaPredicted RBP24.39■■□□□ 1.49
GTF3C1-205ENST00000564747 ZEB1P37275 1124 aaPredicted RBP24.37■■□□□ 1.49
GTF3C1-205ENST00000564747 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
GTF3C1-205ENST00000564747 TOP2AP11388 1531 aaKnown RBP24.16■■□□□ 1.46
GTF3C1-205ENST00000564747 SMARCA4P51532 1647 aa24.14■■□□□ 1.45
GTF3C1-205ENST00000564747 CCDC88BA6NC98 1476 aa24.12■■□□□ 1.45
GTF3C1-205ENST00000564747 ABCC8Q09428 1581 aa24.11■■□□□ 1.45
GTF3C1-205ENST00000564747 UNC13AQ9UPW8 1703 aa24.07■■□□□ 1.44
GTF3C1-205ENST00000564747 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
GTF3C1-205ENST00000564747 SOGA1O94964 1423 aa23.93■■□□□ 1.42
GTF3C1-205ENST00000564747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.93■■□□□ 1.42
GTF3C1-205ENST00000564747 PABPN1Q86U42 306 aaKnown RBP eCLIP23.9■■□□□ 1.42
GTF3C1-205ENST00000564747 CEP162Q5TB80 1403 aa23.85■■□□□ 1.41
GTF3C1-205ENST00000564747 CCER1Q8TC90 406 aaPredicted RBP23.85■■□□□ 1.41
GTF3C1-205ENST00000564747 TTBK1Q5TCY1 1321 aaPredicted RBP23.84■■□□□ 1.41
GTF3C1-205ENST00000564747 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.4
GTF3C1-205ENST00000564747 RUSC2Q8N2Y8 1516 aa23.81■■□□□ 1.4
GTF3C1-205ENST00000564747 CSRNP3Q8WYN3 585 aa23.81■■□□□ 1.4
GTF3C1-205ENST00000564747 TNIKQ9UKE5 1360 aa23.8■■□□□ 1.4
GTF3C1-205ENST00000564747 BICRAQ9NZM4 1560 aa23.78■■□□□ 1.4
GTF3C1-205ENST00000564747 UBTFP17480 764 aaKnown RBP23.75■■□□□ 1.39
GTF3C1-205ENST00000564747 EEA1Q15075 1411 aa23.74■■□□□ 1.39
GTF3C1-205ENST00000564747 PELP1Q8IZL8 1130 aaKnown RBP23.69■■□□□ 1.38
GTF3C1-205ENST00000564747 PEG3Q9GZU2 1588 aa23.64■■□□□ 1.38
GTF3C1-205ENST00000564747 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
GTF3C1-205ENST00000564747 SCAF1Q9H7N4 1312 aaKnown RBP23.6■■□□□ 1.37
GTF3C1-205ENST00000564747 SYNJ1O43426 1573 aa23.54■■□□□ 1.36
GTF3C1-205ENST00000564747 ATAD2BQ9ULI0 1458 aa23.52■■□□□ 1.36
GTF3C1-205ENST00000564747 CEP164Q9UPV0 1460 aa23.47■■□□□ 1.35
GTF3C1-205ENST00000564747 BAZ1BQ9UIG0 1483 aaKnown RBP23.45■■□□□ 1.34
GTF3C1-205ENST00000564747 DIEXFQ68CQ4 756 aaKnown RBP23.45■■□□□ 1.34
GTF3C1-205ENST00000564747 KIF21BO75037 1637 aa23.41■■□□□ 1.34
GTF3C1-205ENST00000564747 CLIP1P30622 1438 aa23.38■■□□□ 1.33
GTF3C1-205ENST00000564747 ACIN1Q9UKV3 1341 aaKnown RBP23.32■■□□□ 1.32
GTF3C1-205ENST00000564747 RAPGEF2Q9Y4G8 1499 aa23.32■■□□□ 1.32
GTF3C1-205ENST00000564747 HNRNPUL2Q1KMD3 747 aaKnown RBP23.32■■□□□ 1.32
GTF3C1-205ENST00000564747 NEUROD1Q13562 356 aa23.31■■□□□ 1.32
GTF3C1-205ENST00000564747 RANGAP1P46060 587 aaPredicted RBP23.29■■□□□ 1.32
GTF3C1-205ENST00000564747 VPS8Q8N3P4 1428 aa23.28■■□□□ 1.32
GTF3C1-205ENST00000564747 ZNF316A6NFI3 1004 aaPredicted RBP23.23■■□□□ 1.31
GTF3C1-205ENST00000564747 APLP2Q06481 763 aa23.22■■□□□ 1.31
GTF3C1-205ENST00000564747 TOP2BQ02880 1626 aa23.21■■□□□ 1.31
GTF3C1-205ENST00000564747 CENPBP07199 599 aaPredicted RBP23.14■■□□□ 1.29
GTF3C1-205ENST00000564747 BIVM-ERCC5R4GMW8 1640 aa23.1■■□□□ 1.29
GTF3C1-205ENST00000564747 GTF3C3Q9Y5Q9 886 aa23.08■■□□□ 1.29
GTF3C1-205ENST00000564747 PRXQ9BXM0 1461 aa23.05■■□□□ 1.28
GTF3C1-205ENST00000564747 NCAPD3P42695 1498 aa23.02■■□□□ 1.28
GTF3C1-205ENST00000564747 ERICH3Q5RHP9 1530 aa23.01■■□□□ 1.27
GTF3C1-205ENST00000564747 CUX1P39880 1505 aa22.99■■□□□ 1.27
GTF3C1-205ENST00000564747 HMGXB3Q12766 1538 aa22.98■■□□□ 1.27
GTF3C1-205ENST00000564747 ARAP1Q96P48 1450 aa22.98■■□□□ 1.27
GTF3C1-205ENST00000564747 KANK4Q5T7N3 995 aaPredicted RBP22.95■■□□□ 1.26
GTF3C1-205ENST00000564747 MIER1Q8N108 512 aa22.95■■□□□ 1.26
GTF3C1-205ENST00000564747 YTHDC1Q96MU7 727 aaKnown RBP22.93■■□□□ 1.26
GTF3C1-205ENST00000564747 KIF27Q86VH2 1401 aa22.91■■□□□ 1.26
GTF3C1-205ENST00000564747 CFTRP13569 1480 aa22.88■■□□□ 1.25
GTF3C1-205ENST00000564747 DHX57Q6P158 1386 aaKnown RBP22.83■■□□□ 1.25
GTF3C1-205ENST00000564747 CLSPNQ9HAW4 1339 aa22.79■■□□□ 1.24
GTF3C1-205ENST00000564747 ARHGAP35Q9NRY4 1499 aa22.77■■□□□ 1.24
GTF3C1-205ENST00000564747 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
GTF3C1-205ENST00000564747 IGF1RP08069 1367 aa22.7■■□□□ 1.22
GTF3C1-205ENST00000564747 CUX2O14529 1486 aa22.69■■□□□ 1.22
GTF3C1-205ENST00000564747 CCNB3Q8WWL7 1395 aa22.68■■□□□ 1.22
GTF3C1-205ENST00000564747 ITGAEP38570 1179 aa22.67■■□□□ 1.22
GTF3C1-205ENST00000564747 MYT1Q01538 1121 aa22.63■■□□□ 1.21
GTF3C1-205ENST00000564747 CADPSQ9ULU8 1353 aa22.62■■□□□ 1.21
GTF3C1-205ENST00000564747 PRDM2Q13029 1718 aa22.61■■□□□ 1.21
GTF3C1-205ENST00000564747 CARMIL1Q5VZK9 1371 aa22.6■■□□□ 1.21
GTF3C1-205ENST00000564747 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
GTF3C1-205ENST00000564747 TIAM1Q13009 1591 aa22.51■■□□□ 1.19
GTF3C1-205ENST00000564747 RAB3GAP2Q9H2M9 1393 aa22.5■■□□□ 1.19
GTF3C1-205ENST00000564747 P3H3Q8IVL6 736 aa22.47■■□□□ 1.19
GTF3C1-205ENST00000564747 MAP3K1Q13233 1512 aa22.47■■□□□ 1.19
GTF3C1-205ENST00000564747 LRRC9Q6ZRR7 1453 aa22.46■■□□□ 1.19
GTF3C1-205ENST00000564747 PHLDB1Q86UU1 1377 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms