RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 CHIC1Q5VXU3 224 aa10.36□□□□□ -0.75
CHD9-209ENST00000564255 AEBP2Q6ZN18 517 aaPredicted RBP10.27□□□□□ -0.77
CHD9-209ENST00000564255 PHF23Q9BUL5 403 aaPredicted RBP9.15□□□□□ -0.94
CHD9-209ENST00000564255 SENP3Q9H4L4 574 aaPredicted RBP8.63□□□□□ -1.03
CHD9-209ENST00000564255 POTEDQ86YR6 584 aa8.55□□□□□ -1.04
CHD9-209ENST00000564255 PLPPR3Q6T4P5 718 aa8.53□□□□□ -1.04
CHD9-209ENST00000564255 FOXD1Q16676 465 aa7.98□□□□□ -1.13
CHD9-209ENST00000564255 ADRA2BP18089 450 aa7.98□□□□□ -1.13
CHD9-209ENST00000564255 PPP6R1Q9UPN7 881 aa7.93□□□□□ -1.14
CHD9-209ENST00000564255 KCNA4P22459 653 aa7.75□□□□□ -1.17
CHD9-209ENST00000564255 PIAS4Q8N2W9 510 aaPredicted RBP7.57□□□□□ -1.2
CHD9-209ENST00000564255 PPP4R3CPQ6ZMV5 832 aa7.57□□□□□ -1.2
CHD9-209ENST00000564255 EHMT2Q96KQ7 1210 aa7.55□□□□□ -1.2
CHD9-209ENST00000564255 NCBP3Q53F19 620 aaKnown RBP7.45□□□□□ -1.22
CHD9-209ENST00000564255 SLC4A1APQ9BWU0 796 aaKnown RBP7.43□□□□□ -1.22
CHD9-209ENST00000564255 MSH5O43196 834 aa7.39□□□□□ -1.23
CHD9-209ENST00000564255 CSRNP3Q8WYN3 585 aa7.38□□□□□ -1.23
CHD9-209ENST00000564255 NPM3O75607 178 aaKnown RBP7.36□□□□□ -1.23
CHD9-209ENST00000564255 CNKSR2Q8WXI2 1034 aa7.29□□□□□ -1.24
CHD9-209ENST00000564255 SCAF1Q9H7N4 1312 aaKnown RBP7.25□□□□□ -1.25
CHD9-209ENST00000564255 DNAJC5BQ9UF47 199 aa7.18□□□□□ -1.26
CHD9-209ENST00000564255 ZBTB22O15209 634 aa7.17□□□□□ -1.26
CHD9-209ENST00000564255 MAPK8IP2Q13387 824 aaPredicted RBP7.1□□□□□ -1.27
CHD9-209ENST00000564255 RNF216Q9NWF9 866 aaPredicted RBP7.07□□□□□ -1.28
CHD9-209ENST00000564255 FOXD4L1Q9NU39 408 aa7.05□□□□□ -1.28
CHD9-209ENST00000564255 HOXD11P31277 338 aaPredicted RBP6.98□□□□□ -1.29
CHD9-209ENST00000564255 DMRT2Q9Y5R5 561 aa6.98□□□□□ -1.29
CHD9-209ENST00000564255 SLC4A2P04920 1241 aa6.88□□□□□ -1.31
CHD9-209ENST00000564255 ATXN8OSP0DMR3 200 aa6.81□□□□□ -1.32
CHD9-209ENST00000564255 MYCNP04198 464 aaPredicted RBP6.79□□□□□ -1.32
CHD9-209ENST00000564255 AMER1Q5JTC6 1135 aaPredicted RBP6.64□□□□□ -1.35
CHD9-209ENST00000564255 FKBP8Q14318 412 aa6.62□□□□□ -1.35
CHD9-209ENST00000564255 DCAF8L1A6NGE4 600 aa6.61□□□□□ -1.35
CHD9-209ENST00000564255 RTN4Q9NQC3 1192 aaKnown RBP6.61□□□□□ -1.35
CHD9-209ENST00000564255 ATF5Q9Y2D1 282 aaPredicted RBP6.59□□□□□ -1.35
CHD9-209ENST00000564255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.57□□□□□ -1.36
CHD9-209ENST00000564255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.55□□□□□ -1.36
CHD9-209ENST00000564255 HNRNPUL2Q1KMD3 747 aaKnown RBP6.55□□□□□ -1.36
CHD9-209ENST00000564255 SAMD1Q6SPF0 538 aaPredicted RBP6.55□□□□□ -1.36
CHD9-209ENST00000564255 U3KPZ7 1027 aaPredicted RBP6.55□□□□□ -1.36
CHD9-209ENST00000564255 SLC24A1O60721 1099 aa6.51□□□□□ -1.37
CHD9-209ENST00000564255 CACNB1Q02641 598 aaPredicted RBP6.43□□□□□ -1.38
CHD9-209ENST00000564255 ZNF219Q9P2Y4 722 aaPredicted RBP6.43□□□□□ -1.38
CHD9-209ENST00000564255 APLP2Q06481 763 aa6.42□□□□□ -1.38
CHD9-209ENST00000564255 POTEHQ6S545 545 aa6.41□□□□□ -1.38
CHD9-209ENST00000564255 MKRN4PQ13434 485 aaPredicted RBP6.33□□□□□ -1.4
CHD9-209ENST00000564255 PROM2Q8N271 834 aa6.33□□□□□ -1.4
CHD9-209ENST00000564255 SPDYE4A6NLX3 237 aa6.31□□□□□ -1.4
CHD9-209ENST00000564255 FBXO3Q9UK99 471 aa6.3□□□□□ -1.4
CHD9-209ENST00000564255 FBLN2P98095 1184 aa6.25□□□□□ -1.41
CHD9-209ENST00000564255 RNF39Q9H2S5 420 aa6.24□□□□□ -1.41
CHD9-209ENST00000564255 SPINK5Q9NQ38 1064 aaPredicted RBP6.24□□□□□ -1.41
CHD9-209ENST00000564255 VASPP50552 380 aaPredicted RBP6.22□□□□□ -1.41
CHD9-209ENST00000564255 TRHP20396 242 aaPredicted RBP6.21□□□□□ -1.42
CHD9-209ENST00000564255 POLA2Q14181 598 aa6.21□□□□□ -1.42
CHD9-209ENST00000564255 CAPN15O75808 1086 aa6.17□□□□□ -1.42
CHD9-209ENST00000564255 C1QBPQ07021 282 aaKnown RBP6.17□□□□□ -1.42
CHD9-209ENST00000564255 IFNLR1Q8IU57 520 aaPredicted RBP6.17□□□□□ -1.42
CHD9-209ENST00000564255 ZBTB12Q9Y330 459 aaPredicted RBP6.16□□□□□ -1.42
CHD9-209ENST00000564255 PLCB2Q00722 1185 aa6.12□□□□□ -1.43
CHD9-209ENST00000564255 PKD2Q13563 968 aa6.1□□□□□ -1.43
CHD9-209ENST00000564255 ABCB7O75027 752 aa6.08□□□□□ -1.44
CHD9-209ENST00000564255 DSG3P32926 999 aa6.04□□□□□ -1.44
CHD9-209ENST00000564255 STAG3Q9UJ98 1225 aa6.04□□□□□ -1.44
CHD9-209ENST00000564255 SSUH2Q9Y2M2 353 aa6.04□□□□□ -1.44
CHD9-209ENST00000564255 SPOCK2Q92563 424 aa6.04□□□□□ -1.44
CHD9-209ENST00000564255 SPDYE2BA6NHP3 402 aa6.02□□□□□ -1.45
CHD9-209ENST00000564255 SPDYE6P0CI01 402 aa6.02□□□□□ -1.45
CHD9-209ENST00000564255 SPDYE2Q495Y8 402 aa6.02□□□□□ -1.45
CHD9-209ENST00000564255 ZNF692Q9BU19 519 aaPredicted RBP6.02□□□□□ -1.45
CHD9-209ENST00000564255 HAP1P54257 671 aaPredicted RBP6□□□□□ -1.45
CHD9-209ENST00000564255 DCAF8L2P0C7V8 631 aa5.99□□□□□ -1.45
CHD9-209ENST00000564255 OSCARQ8IYS5 282 aa5.99□□□□□ -1.45
CHD9-209ENST00000564255 KLHL34Q8N239 644 aa5.98□□□□□ -1.45
CHD9-209ENST00000564255 BBXQ8WY36 941 aaPredicted RBP5.97□□□□□ -1.45
CHD9-209ENST00000564255 ECM2O94769 699 aaPredicted RBP5.96□□□□□ -1.45
CHD9-209ENST00000564255 VSIG10Q8N0Z9 540 aa5.96□□□□□ -1.45
CHD9-209ENST00000564255 PABPN1Q86U42 306 aaKnown RBP eCLIP5.96□□□□□ -1.46
CHD9-209ENST00000564255 NPM1P06748 294 aaKnown RBP eCLIP5.95□□□□□ -1.46
CHD9-209ENST00000564255 PLSCR2Q9NRY7 297 aa5.94□□□□□ -1.46
CHD9-209ENST00000564255 PLCD3Q8N3E9 789 aa5.93□□□□□ -1.46
CHD9-209ENST00000564255 RGL2O15211 777 aa5.92□□□□□ -1.46
CHD9-209ENST00000564255 MIER1Q8N108 512 aa5.91□□□□□ -1.46
CHD9-209ENST00000564255 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.91□□□□□ -1.46
CHD9-209ENST00000564255 BCANQ96GW7 911 aa5.9□□□□□ -1.47
CHD9-209ENST00000564255 ZBTB47Q9UFB7 747 aaPredicted RBP5.88□□□□□ -1.47
CHD9-209ENST00000564255 PAXIP1Q6ZW49 1069 aaPredicted RBP5.88□□□□□ -1.47
CHD9-209ENST00000564255 KDM2AQ9Y2K7 1162 aa5.87□□□□□ -1.47
CHD9-209ENST00000564255 TRIM41Q8WV44 630 aa5.86□□□□□ -1.47
CHD9-209ENST00000564255 PLEKHG5O94827 1062 aa5.85□□□□□ -1.47
CHD9-209ENST00000564255 CFAP44Q96MT7 982 aa5.85□□□□□ -1.47
CHD9-209ENST00000564255 SPRYD3Q8NCJ5 442 aa5.83□□□□□ -1.48
CHD9-209ENST00000564255 CIZ1Q9ULV3 898 aaPredicted RBP5.83□□□□□ -1.48
CHD9-209ENST00000564255 DNAJC5Q9H3Z4 198 aa5.82□□□□□ -1.48
CHD9-209ENST00000564255 TAOK2Q9UL54 1235 aa5.81□□□□□ -1.48
CHD9-209ENST00000564255 HS6ST3Q8IZP7 471 aa5.81□□□□□ -1.48
CHD9-209ENST00000564255 NUBP1P53384 320 aa5.8□□□□□ -1.48
CHD9-209ENST00000564255 GSE1Q14687 1217 aa5.8□□□□□ -1.48
CHD9-209ENST00000564255 TSHZ2Q9NRE2 1034 aa5.8□□□□□ -1.48
CHD9-209ENST00000564255 CHGAP10645 457 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms