RNA–Protein interactions for RNA: ENST00000560927.1

CRTC3-210, Transcript of CREB regulated transcription coactivator 3, humanhuman

TSL 2

Gene CRTC3, Length 2,463 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRTC3-210ENST00000560927 NISCHQ9Y2I1 1504 aa30.87■■■□□ 2.53
CRTC3-210ENST00000560927 CCDC180Q9P1Z9 1646 aa26.31■■□□□ 1.8
CRTC3-210ENST00000560927 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
CRTC3-210ENST00000560927 ZCCHC6Q5VYS8 1495 aaKnown RBP26.09■■□□□ 1.77
CRTC3-210ENST00000560927 DCAF8L2P0C7V8 631 aa25.58■■□□□ 1.69
CRTC3-210ENST00000560927 SUPT5HO00267 1087 aaKnown RBP25.57■■□□□ 1.68
CRTC3-210ENST00000560927 DCAF1Q9Y4B6 1507 aa25.33■■□□□ 1.65
CRTC3-210ENST00000560927 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
CRTC3-210ENST00000560927 MYO15BQ96JP2 1530 aa24.7■■□□□ 1.54
CRTC3-210ENST00000560927 SCRIBQ14160 1630 aa24.64■■□□□ 1.53
CRTC3-210ENST00000560927 ABCC9O60706 1549 aa24.58■■□□□ 1.53
CRTC3-210ENST00000560927 RSF1Q96T23 1441 aaPredicted RBP24.37■■□□□ 1.49
CRTC3-210ENST00000560927 NACADO15069 1562 aa24.37■■□□□ 1.49
CRTC3-210ENST00000560927 CECR2Q9BXF3 1484 aa24.1■■□□□ 1.45
CRTC3-210ENST00000560927 RB1CC1Q8TDY2 1594 aa24.09■■□□□ 1.45
CRTC3-210ENST00000560927 LOC105371045A0A1W2PR82 267 aa24.06■■□□□ 1.44
CRTC3-210ENST00000560927 MROH2BQ7Z745 1585 aa24■■□□□ 1.43
CRTC3-210ENST00000560927 WIZO95785 1651 aa23.86■■□□□ 1.41
CRTC3-210ENST00000560927 PCGF6Q9BYE7 350 aa23.85■■□□□ 1.41
CRTC3-210ENST00000560927 TRIM41Q8WV44 630 aa23.83■■□□□ 1.41
CRTC3-210ENST00000560927 HRCP23327 699 aa23.73■■□□□ 1.39
CRTC3-210ENST00000560927 BAZ1AQ9NRL2 1556 aaPredicted RBP23.71■■□□□ 1.39
CRTC3-210ENST00000560927 UNC13AQ9UPW8 1703 aa23.66■■□□□ 1.38
CRTC3-210ENST00000560927 FAM9AQ8IZU1 332 aaPredicted RBP23.64■■□□□ 1.37
CRTC3-210ENST00000560927 SMARCA4P51532 1647 aa23.54■■□□□ 1.36
CRTC3-210ENST00000560927 EIF4G1Q04637 1599 aaKnown RBP23.49■■□□□ 1.35
CRTC3-210ENST00000560927 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
CRTC3-210ENST00000560927 EHMT2Q96KQ7 1210 aa23.43■■□□□ 1.34
CRTC3-210ENST00000560927 TRIM26Q12899 539 aaPredicted RBP23.43■■□□□ 1.34
CRTC3-210ENST00000560927 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.34
CRTC3-210ENST00000560927 BICRAQ9NZM4 1560 aa23.39■■□□□ 1.33
CRTC3-210ENST00000560927 CCDC88BA6NC98 1476 aa23.38■■□□□ 1.33
CRTC3-210ENST00000560927 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
CRTC3-210ENST00000560927 PPARGC1BQ86YN6 1023 aaKnown RBP23.29■■□□□ 1.32
CRTC3-210ENST00000560927 ABCC8Q09428 1581 aa23.27■■□□□ 1.32
CRTC3-210ENST00000560927 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
CRTC3-210ENST00000560927 SOGA1O94964 1423 aa23.01■■□□□ 1.27
CRTC3-210ENST00000560927 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
CRTC3-210ENST00000560927 RUSC2Q8N2Y8 1516 aa22.92■■□□□ 1.26
CRTC3-210ENST00000560927 BAZ1BQ9UIG0 1483 aaKnown RBP22.9■■□□□ 1.26
CRTC3-210ENST00000560927 WRNQ14191 1432 aaPredicted RBP eCLIP22.88■■□□□ 1.25
CRTC3-210ENST00000560927 CSRNP3Q8WYN3 585 aa22.84■■□□□ 1.25
CRTC3-210ENST00000560927 EEA1Q15075 1411 aa22.84■■□□□ 1.25
CRTC3-210ENST00000560927 CEP162Q5TB80 1403 aa22.82■■□□□ 1.24
CRTC3-210ENST00000560927 ZEB1P37275 1124 aaPredicted RBP22.81■■□□□ 1.24
CRTC3-210ENST00000560927 SYNJ1O43426 1573 aa22.79■■□□□ 1.24
CRTC3-210ENST00000560927 TNIKQ9UKE5 1360 aa22.79■■□□□ 1.24
CRTC3-210ENST00000560927 UBTFP17480 764 aaKnown RBP22.72■■□□□ 1.23
CRTC3-210ENST00000560927 GOLGA3Q08378 1498 aa22.69■■□□□ 1.22
CRTC3-210ENST00000560927 TTBK1Q5TCY1 1321 aaPredicted RBP22.63■■□□□ 1.21
CRTC3-210ENST00000560927 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
CRTC3-210ENST00000560927 NCAPD3P42695 1498 aa22.56■■□□□ 1.2
CRTC3-210ENST00000560927 KIF21BO75037 1637 aa22.56■■□□□ 1.2
CRTC3-210ENST00000560927 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.55■■□□□ 1.2
CRTC3-210ENST00000560927 HMGXB3Q12766 1538 aa22.54■■□□□ 1.2
CRTC3-210ENST00000560927 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
CRTC3-210ENST00000560927 RAPGEF2Q9Y4G8 1499 aa22.46■■□□□ 1.19
CRTC3-210ENST00000560927 CCER1Q8TC90 406 aaPredicted RBP22.45■■□□□ 1.18
CRTC3-210ENST00000560927 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
CRTC3-210ENST00000560927 CLIP1P30622 1438 aa22.42■■□□□ 1.18
CRTC3-210ENST00000560927 CUX1P39880 1505 aa22.35■■□□□ 1.17
CRTC3-210ENST00000560927 CFTRP13569 1480 aa22.34■■□□□ 1.17
CRTC3-210ENST00000560927 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
CRTC3-210ENST00000560927 VPS8Q8N3P4 1428 aa22.31■■□□□ 1.16
CRTC3-210ENST00000560927 PRXQ9BXM0 1461 aa22.26■■□□□ 1.15
CRTC3-210ENST00000560927 ERICH3Q5RHP9 1530 aa22.22■■□□□ 1.15
CRTC3-210ENST00000560927 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
CRTC3-210ENST00000560927 APLP2Q06481 763 aa22.14■■□□□ 1.13
CRTC3-210ENST00000560927 PRDM2Q13029 1718 aa22.13■■□□□ 1.13
CRTC3-210ENST00000560927 HNRNPUL2Q1KMD3 747 aaKnown RBP22.12■■□□□ 1.13
CRTC3-210ENST00000560927 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
CRTC3-210ENST00000560927 ARAP1Q96P48 1450 aa22.11■■□□□ 1.13
CRTC3-210ENST00000560927 CC2D2AQ9P2K1 1620 aa22.07■■□□□ 1.12
CRTC3-210ENST00000560927 CUX2O14529 1486 aa22.01■■□□□ 1.11
CRTC3-210ENST00000560927 IGF1RP08069 1367 aa21.97■■□□□ 1.11
CRTC3-210ENST00000560927 FGD5Q6ZNL6 1462 aa21.97■■□□□ 1.11
CRTC3-210ENST00000560927 KANK4Q5T7N3 995 aaPredicted RBP21.96■■□□□ 1.11
CRTC3-210ENST00000560927 ARHGAP35Q9NRY4 1499 aa21.94■■□□□ 1.1
CRTC3-210ENST00000560927 DIEXFQ68CQ4 756 aaKnown RBP21.91■■□□□ 1.1
CRTC3-210ENST00000560927 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
CRTC3-210ENST00000560927 CARMIL1Q5VZK9 1371 aa21.86■■□□□ 1.09
CRTC3-210ENST00000560927 NESP48681 1621 aa21.81■■□□□ 1.08
CRTC3-210ENST00000560927 ZNF316A6NFI3 1004 aaPredicted RBP21.81■■□□□ 1.08
CRTC3-210ENST00000560927 RAD54L2Q9Y4B4 1467 aa21.78■■□□□ 1.08
CRTC3-210ENST00000560927 RRBP1Q9P2E9 1410 aaKnown RBP21.77■■□□□ 1.08
CRTC3-210ENST00000560927 DNMBPQ6XZF7 1577 aa21.77■■□□□ 1.08
CRTC3-210ENST00000560927 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
CRTC3-210ENST00000560927 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
CRTC3-210ENST00000560927 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
CRTC3-210ENST00000560927 ABCA10Q8WWZ4 1543 aa21.7■■□□□ 1.06
CRTC3-210ENST00000560927 DHX57Q6P158 1386 aaKnown RBP21.7■■□□□ 1.06
CRTC3-210ENST00000560927 CCNB3Q8WWL7 1395 aa21.68■■□□□ 1.06
CRTC3-210ENST00000560927 TIAM1Q13009 1591 aa21.66■■□□□ 1.06
CRTC3-210ENST00000560927 P3H3Q8IVL6 736 aa21.64■■□□□ 1.05
CRTC3-210ENST00000560927 MAP3K1Q13233 1512 aa21.62■■□□□ 1.05
CRTC3-210ENST00000560927 NEUROD1Q13562 356 aa21.62■■□□□ 1.05
CRTC3-210ENST00000560927 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
CRTC3-210ENST00000560927 ACIN1Q9UKV3 1341 aaKnown RBP21.61■■□□□ 1.05
CRTC3-210ENST00000560927 ITGAEP38570 1179 aa21.61■■□□□ 1.05
CRTC3-210ENST00000560927 CLSPNQ9HAW4 1339 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms