RNA–Protein interactions for RNA: ENST00000560588.5

RMDN3-209, Transcript of regulator of microtubule dynamics 3, humanhuman

TSL 2

Gene RMDN3, Length 2,202 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RMDN3-209ENST00000560588 NISCHQ9Y2I1 1504 aa22.03■■□□□ 1.12
RMDN3-209ENST00000560588 CCDC180Q9P1Z9 1646 aa19.01■□□□□ 0.63
RMDN3-209ENST00000560588 ZCCHC6Q5VYS8 1495 aaKnown RBP18.62■□□□□ 0.57
RMDN3-209ENST00000560588 DCAF1Q9Y4B6 1507 aa18.27■□□□□ 0.52
RMDN3-209ENST00000560588 SHROOM4Q9ULL8 1493 aa18.26■□□□□ 0.51
RMDN3-209ENST00000560588 DCAF8L2P0C7V8 631 aa17.95■□□□□ 0.46
RMDN3-209ENST00000560588 SUPT5HO00267 1087 aaKnown RBP17.87■□□□□ 0.45
RMDN3-209ENST00000560588 MYO15BQ96JP2 1530 aa17.86■□□□□ 0.45
RMDN3-209ENST00000560588 NACADO15069 1562 aa17.57■□□□□ 0.4
RMDN3-209ENST00000560588 ABCC9O60706 1549 aa17.54■□□□□ 0.4
RMDN3-209ENST00000560588 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
RMDN3-209ENST00000560588 CHIC1Q5VXU3 224 aa17.42■□□□□ 0.38
RMDN3-209ENST00000560588 RB1CC1Q8TDY2 1594 aa17.28■□□□□ 0.36
RMDN3-209ENST00000560588 RSF1Q96T23 1441 aaPredicted RBP17.28■□□□□ 0.36
RMDN3-209ENST00000560588 CECR2Q9BXF3 1484 aa17.01■□□□□ 0.31
RMDN3-209ENST00000560588 MROH2BQ7Z745 1585 aa17■□□□□ 0.31
RMDN3-209ENST00000560588 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
RMDN3-209ENST00000560588 UNC13AQ9UPW8 1703 aa16.91■□□□□ 0.3
RMDN3-209ENST00000560588 WIZO95785 1651 aa16.9■□□□□ 0.3
RMDN3-209ENST00000560588 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
RMDN3-209ENST00000560588 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
RMDN3-209ENST00000560588 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
RMDN3-209ENST00000560588 LOC105371045A0A1W2PR82 267 aa16.72■□□□□ 0.27
RMDN3-209ENST00000560588 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
RMDN3-209ENST00000560588 BICRAQ9NZM4 1560 aa16.7■□□□□ 0.26
RMDN3-209ENST00000560588 SMARCA2P51531 1590 aa16.63■□□□□ 0.25
RMDN3-209ENST00000560588 PEG3Q9GZU2 1588 aa16.62■□□□□ 0.25
RMDN3-209ENST00000560588 CCDC88BA6NC98 1476 aa16.59■□□□□ 0.25
RMDN3-209ENST00000560588 HRCP23327 699 aa16.58■□□□□ 0.25
RMDN3-209ENST00000560588 PCGF6Q9BYE7 350 aa16.56■□□□□ 0.24
RMDN3-209ENST00000560588 TRIM26Q12899 539 aaPredicted RBP16.5■□□□□ 0.23
RMDN3-209ENST00000560588 PABPN1Q86U42 306 aaKnown RBP eCLIP16.49■□□□□ 0.23
RMDN3-209ENST00000560588 FAM9AQ8IZU1 332 aaPredicted RBP16.45■□□□□ 0.22
RMDN3-209ENST00000560588 ATAD2BQ9ULI0 1458 aa16.4■□□□□ 0.22
RMDN3-209ENST00000560588 EEA1Q15075 1411 aa16.39■□□□□ 0.21
RMDN3-209ENST00000560588 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
RMDN3-209ENST00000560588 BAZ1BQ9UIG0 1483 aaKnown RBP16.36■□□□□ 0.21
RMDN3-209ENST00000560588 WRNQ14191 1432 aaPredicted RBP eCLIP16.26■□□□□ 0.19
RMDN3-209ENST00000560588 HMGXB3Q12766 1538 aa16.23■□□□□ 0.19
RMDN3-209ENST00000560588 ZEB1P37275 1124 aaPredicted RBP16.21■□□□□ 0.18
RMDN3-209ENST00000560588 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
RMDN3-209ENST00000560588 NCAPD3P42695 1498 aa16.19■□□□□ 0.18
RMDN3-209ENST00000560588 SOGA1O94964 1423 aa16.19■□□□□ 0.18
RMDN3-209ENST00000560588 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
RMDN3-209ENST00000560588 SYNJ1O43426 1573 aa16.15■□□□□ 0.18
RMDN3-209ENST00000560588 GOLGA3Q08378 1498 aa16.15■□□□□ 0.18
RMDN3-209ENST00000560588 EHMT2Q96KQ7 1210 aa16.14■□□□□ 0.17
RMDN3-209ENST00000560588 CEP162Q5TB80 1403 aa16.12■□□□□ 0.17
RMDN3-209ENST00000560588 KIF21BO75037 1637 aa16.11■□□□□ 0.17
RMDN3-209ENST00000560588 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
RMDN3-209ENST00000560588 TOP2BQ02880 1626 aa16.08■□□□□ 0.17
RMDN3-209ENST00000560588 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
RMDN3-209ENST00000560588 BIVM-ERCC5R4GMW8 1640 aa16.07■□□□□ 0.16
RMDN3-209ENST00000560588 UBTFP17480 764 aaKnown RBP16■□□□□ 0.15
RMDN3-209ENST00000560588 PPARGC1BQ86YN6 1023 aaKnown RBP15.99■□□□□ 0.15
RMDN3-209ENST00000560588 PRDM2Q13029 1718 aa15.98■□□□□ 0.15
RMDN3-209ENST00000560588 CFTRP13569 1480 aa15.97■□□□□ 0.15
RMDN3-209ENST00000560588 ERICH3Q5RHP9 1530 aa15.92■□□□□ 0.14
RMDN3-209ENST00000560588 CLIP1P30622 1438 aa15.88■□□□□ 0.13
RMDN3-209ENST00000560588 CUX1P39880 1505 aa15.88■□□□□ 0.13
RMDN3-209ENST00000560588 RAPGEF2Q9Y4G8 1499 aa15.85■□□□□ 0.13
RMDN3-209ENST00000560588 PRXQ9BXM0 1461 aa15.84■□□□□ 0.13
RMDN3-209ENST00000560588 KIF27Q86VH2 1401 aa15.83■□□□□ 0.13
RMDN3-209ENST00000560588 VPS8Q8N3P4 1428 aa15.83■□□□□ 0.13
RMDN3-209ENST00000560588 CADPSQ9ULU8 1353 aa15.8■□□□□ 0.12
RMDN3-209ENST00000560588 CC2D2AQ9P2K1 1620 aa15.78■□□□□ 0.12
RMDN3-209ENST00000560588 CCER1Q8TC90 406 aaPredicted RBP15.74■□□□□ 0.11
RMDN3-209ENST00000560588 APLP2Q06481 763 aa15.72■□□□□ 0.11
RMDN3-209ENST00000560588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.67■□□□□ 0.1
RMDN3-209ENST00000560588 ARAP1Q96P48 1450 aa15.64■□□□□ 0.09
RMDN3-209ENST00000560588 CUX2O14529 1486 aa15.64■□□□□ 0.09
RMDN3-209ENST00000560588 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
RMDN3-209ENST00000560588 FANCD2Q9BXW9 1451 aa15.62■□□□□ 0.09
RMDN3-209ENST00000560588 TTBK1Q5TCY1 1321 aaPredicted RBP15.62■□□□□ 0.09
RMDN3-209ENST00000560588 DNMBPQ6XZF7 1577 aa15.61■□□□□ 0.09
RMDN3-209ENST00000560588 IGF1RP08069 1367 aa15.6■□□□□ 0.09
RMDN3-209ENST00000560588 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
RMDN3-209ENST00000560588 CARMIL1Q5VZK9 1371 aa15.55■□□□□ 0.08
RMDN3-209ENST00000560588 ARHGAP35Q9NRY4 1499 aa15.53■□□□□ 0.08
RMDN3-209ENST00000560588 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
RMDN3-209ENST00000560588 MAP3K1Q13233 1512 aa15.52■□□□□ 0.07
RMDN3-209ENST00000560588 TOPBP1Q92547 1522 aa15.52■□□□□ 0.07
RMDN3-209ENST00000560588 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
RMDN3-209ENST00000560588 CUL7Q14999 1698 aa15.49■□□□□ 0.07
RMDN3-209ENST00000560588 POLA1P09884 1462 aaPredicted RBP15.47■□□□□ 0.07
RMDN3-209ENST00000560588 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
RMDN3-209ENST00000560588 RRBP1Q9P2E9 1410 aaKnown RBP15.45■□□□□ 0.06
RMDN3-209ENST00000560588 FHAD1B1AJZ9 1412 aa15.43■□□□□ 0.06
RMDN3-209ENST00000560588 PDS5BQ9NTI5 1447 aa15.43■□□□□ 0.06
RMDN3-209ENST00000560588 CLSPNQ9HAW4 1339 aa15.43■□□□□ 0.06
RMDN3-209ENST00000560588 WDR97A6NE52 1622 aa15.43■□□□□ 0.06
RMDN3-209ENST00000560588 EFCAB5A4FU69 1503 aa15.42■□□□□ 0.06
RMDN3-209ENST00000560588 NESP48681 1621 aa15.42■□□□□ 0.06
RMDN3-209ENST00000560588 TIAM1Q13009 1591 aa15.4■□□□□ 0.06
RMDN3-209ENST00000560588 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
RMDN3-209ENST00000560588 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
RMDN3-209ENST00000560588 KANK4Q5T7N3 995 aaPredicted RBP15.38■□□□□ 0.05
RMDN3-209ENST00000560588 CTTNBP2Q8WZ74 1663 aa15.38■□□□□ 0.05
RMDN3-209ENST00000560588 CFAP43Q8NDM7 1665 aa15.36■□□□□ 0.05
RMDN3-209ENST00000560588 CCNB3Q8WWL7 1395 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 169.1 ms