RNA–Protein interactions for RNA: ENST00000547318.5

LETMD1-209, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best)

Gene LETMD1, Length 2,001 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-209ENST00000547318 NISCHQ9Y2I1 1504 aa30.6■■■□□ 2.49
LETMD1-209ENST00000547318 CCDC180Q9P1Z9 1646 aa26.32■■□□□ 1.8
LETMD1-209ENST00000547318 ZCCHC6Q5VYS8 1495 aaKnown RBP25.93■■□□□ 1.74
LETMD1-209ENST00000547318 SHROOM4Q9ULL8 1493 aa25.48■■□□□ 1.67
LETMD1-209ENST00000547318 DCAF1Q9Y4B6 1507 aa25.41■■□□□ 1.66
LETMD1-209ENST00000547318 SUPT5HO00267 1087 aaKnown RBP25.03■■□□□ 1.6
LETMD1-209ENST00000547318 DCAF8L2P0C7V8 631 aa24.77■■□□□ 1.56
LETMD1-209ENST00000547318 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
LETMD1-209ENST00000547318 CHIC1Q5VXU3 224 aa24.54■■□□□ 1.52
LETMD1-209ENST00000547318 ABCC9O60706 1549 aa24.49■■□□□ 1.51
LETMD1-209ENST00000547318 NACADO15069 1562 aa24.26■■□□□ 1.47
LETMD1-209ENST00000547318 SCRIBQ14160 1630 aa24.21■■□□□ 1.47
LETMD1-209ENST00000547318 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.45
LETMD1-209ENST00000547318 RB1CC1Q8TDY2 1594 aa24■■□□□ 1.43
LETMD1-209ENST00000547318 HRCP23327 699 aa23.8■■□□□ 1.4
LETMD1-209ENST00000547318 MROH2BQ7Z745 1585 aa23.63■■□□□ 1.37
LETMD1-209ENST00000547318 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
LETMD1-209ENST00000547318 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
LETMD1-209ENST00000547318 PCGF6Q9BYE7 350 aa23.58■■□□□ 1.37
LETMD1-209ENST00000547318 LOC105371045A0A1W2PR82 267 aa23.55■■□□□ 1.36
LETMD1-209ENST00000547318 TRIM41Q8WV44 630 aa23.54■■□□□ 1.36
LETMD1-209ENST00000547318 WIZO95785 1651 aa23.49■■□□□ 1.35
LETMD1-209ENST00000547318 TRIM26Q12899 539 aaPredicted RBP23.45■■□□□ 1.34
LETMD1-209ENST00000547318 EIF4G1Q04637 1599 aaKnown RBP23.37■■□□□ 1.33
LETMD1-209ENST00000547318 TOP2AP11388 1531 aaKnown RBP23.35■■□□□ 1.33
LETMD1-209ENST00000547318 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
LETMD1-209ENST00000547318 UNC13AQ9UPW8 1703 aa23.3■■□□□ 1.32
LETMD1-209ENST00000547318 ZEB1P37275 1124 aaPredicted RBP23.14■■□□□ 1.29
LETMD1-209ENST00000547318 SMARCA2P51531 1590 aa23.13■■□□□ 1.29
LETMD1-209ENST00000547318 CCDC88BA6NC98 1476 aa23.07■■□□□ 1.28
LETMD1-209ENST00000547318 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
LETMD1-209ENST00000547318 FAM9AQ8IZU1 332 aaPredicted RBP23.02■■□□□ 1.28
LETMD1-209ENST00000547318 BICRAQ9NZM4 1560 aa22.99■■□□□ 1.27
LETMD1-209ENST00000547318 EEA1Q15075 1411 aa22.98■■□□□ 1.27
LETMD1-209ENST00000547318 PPARGC1BQ86YN6 1023 aaKnown RBP22.89■■□□□ 1.26
LETMD1-209ENST00000547318 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
LETMD1-209ENST00000547318 WRNQ14191 1432 aaPredicted RBP eCLIP22.83■■□□□ 1.25
LETMD1-209ENST00000547318 TNIKQ9UKE5 1360 aa22.75■■□□□ 1.23
LETMD1-209ENST00000547318 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
LETMD1-209ENST00000547318 CEP162Q5TB80 1403 aa22.66■■□□□ 1.22
LETMD1-209ENST00000547318 GOLGA3Q08378 1498 aa22.64■■□□□ 1.21
LETMD1-209ENST00000547318 SOGA1O94964 1423 aa22.62■■□□□ 1.21
LETMD1-209ENST00000547318 BAZ1BQ9UIG0 1483 aaKnown RBP22.61■■□□□ 1.21
LETMD1-209ENST00000547318 CSRNP3Q8WYN3 585 aa22.61■■□□□ 1.21
LETMD1-209ENST00000547318 KIF21BO75037 1637 aa22.59■■□□□ 1.21
LETMD1-209ENST00000547318 PABPN1Q86U42 306 aaKnown RBP eCLIP22.58■■□□□ 1.21
LETMD1-209ENST00000547318 EHMT2Q96KQ7 1210 aa22.57■■□□□ 1.2
LETMD1-209ENST00000547318 CEP164Q9UPV0 1460 aa22.54■■□□□ 1.2
LETMD1-209ENST00000547318 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
LETMD1-209ENST00000547318 RUSC2Q8N2Y8 1516 aa22.45■■□□□ 1.18
LETMD1-209ENST00000547318 HMGXB3Q12766 1538 aa22.44■■□□□ 1.18
LETMD1-209ENST00000547318 TOP2BQ02880 1626 aa22.4■■□□□ 1.18
LETMD1-209ENST00000547318 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.17
LETMD1-209ENST00000547318 UBTFP17480 764 aaKnown RBP22.37■■□□□ 1.17
LETMD1-209ENST00000547318 NCAPD3P42695 1498 aa22.34■■□□□ 1.17
LETMD1-209ENST00000547318 CCER1Q8TC90 406 aaPredicted RBP22.3■■□□□ 1.16
LETMD1-209ENST00000547318 ERICH3Q5RHP9 1530 aa22.27■■□□□ 1.16
LETMD1-209ENST00000547318 CLIP1P30622 1438 aa22.26■■□□□ 1.15
LETMD1-209ENST00000547318 VPS8Q8N3P4 1428 aa22.25■■□□□ 1.15
LETMD1-209ENST00000547318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.19■■□□□ 1.14
LETMD1-209ENST00000547318 RAPGEF2Q9Y4G8 1499 aa22.15■■□□□ 1.14
LETMD1-209ENST00000547318 PRDM2Q13029 1718 aa22.15■■□□□ 1.14
LETMD1-209ENST00000547318 PRXQ9BXM0 1461 aa22.12■■□□□ 1.13
LETMD1-209ENST00000547318 CFTRP13569 1480 aa22.11■■□□□ 1.13
LETMD1-209ENST00000547318 CUX1P39880 1505 aa22.05■■□□□ 1.12
LETMD1-209ENST00000547318 APLP2Q06481 763 aa22.04■■□□□ 1.12
LETMD1-209ENST00000547318 KIF27Q86VH2 1401 aa22.03■■□□□ 1.12
LETMD1-209ENST00000547318 TTBK1Q5TCY1 1321 aaPredicted RBP21.92■■□□□ 1.1
LETMD1-209ENST00000547318 ARAP1Q96P48 1450 aa21.91■■□□□ 1.1
LETMD1-209ENST00000547318 DIEXFQ68CQ4 756 aaKnown RBP21.87■■□□□ 1.09
LETMD1-209ENST00000547318 CLSPNQ9HAW4 1339 aa21.87■■□□□ 1.09
LETMD1-209ENST00000547318 ZNF316A6NFI3 1004 aaPredicted RBP21.81■■□□□ 1.08
LETMD1-209ENST00000547318 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
LETMD1-209ENST00000547318 MAP3K1Q13233 1512 aa21.77■■□□□ 1.08
LETMD1-209ENST00000547318 RRBP1Q9P2E9 1410 aaKnown RBP21.76■■□□□ 1.07
LETMD1-209ENST00000547318 CENPBP07199 599 aaPredicted RBP21.75■■□□□ 1.07
LETMD1-209ENST00000547318 PELP1Q8IZL8 1130 aaKnown RBP21.75■■□□□ 1.07
LETMD1-209ENST00000547318 HNRNPUL2Q1KMD3 747 aaKnown RBP21.73■■□□□ 1.07
LETMD1-209ENST00000547318 ARHGAP35Q9NRY4 1499 aa21.72■■□□□ 1.07
LETMD1-209ENST00000547318 SCAF1Q9H7N4 1312 aaKnown RBP21.72■■□□□ 1.07
LETMD1-209ENST00000547318 ACIN1Q9UKV3 1341 aaKnown RBP21.71■■□□□ 1.07
LETMD1-209ENST00000547318 CUX2O14529 1486 aa21.71■■□□□ 1.07
LETMD1-209ENST00000547318 IGF1RP08069 1367 aa21.67■■□□□ 1.06
LETMD1-209ENST00000547318 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
LETMD1-209ENST00000547318 CC2D2AQ9P2K1 1620 aa21.64■■□□□ 1.05
LETMD1-209ENST00000547318 DNMBPQ6XZF7 1577 aa21.61■■□□□ 1.05
LETMD1-209ENST00000547318 CARMIL1Q5VZK9 1371 aa21.6■■□□□ 1.05
LETMD1-209ENST00000547318 TIAM1Q13009 1591 aa21.59■■□□□ 1.05
LETMD1-209ENST00000547318 DHX57Q6P158 1386 aaKnown RBP21.58■■□□□ 1.04
LETMD1-209ENST00000547318 CCNB3Q8WWL7 1395 aa21.57■■□□□ 1.04
LETMD1-209ENST00000547318 RANGAP1P46060 587 aaPredicted RBP21.57■■□□□ 1.04
LETMD1-209ENST00000547318 FHAD1B1AJZ9 1412 aa21.57■■□□□ 1.04
LETMD1-209ENST00000547318 FANCD2Q9BXW9 1451 aa21.57■■□□□ 1.04
LETMD1-209ENST00000547318 ABCA10Q8WWZ4 1543 aa21.55■■□□□ 1.04
LETMD1-209ENST00000547318 CUL7Q14999 1698 aa21.54■■□□□ 1.04
LETMD1-209ENST00000547318 KANK4Q5T7N3 995 aaPredicted RBP21.54■■□□□ 1.04
LETMD1-209ENST00000547318 EFCAB5A4FU69 1503 aa21.53■■□□□ 1.04
LETMD1-209ENST00000547318 CFAP43Q8NDM7 1665 aa21.52■■□□□ 1.04
LETMD1-209ENST00000547318 NEUROD1Q13562 356 aa21.51■■□□□ 1.03
LETMD1-209ENST00000547318 AQRO60306 1485 aaKnown RBP eCLIP21.45■■□□□ 1.031e-6■■□□□ 12.7
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms