RNA–Protein interactions for RNA: ENST00000525508.1

CHD7-203, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 5 BASIC

Gene CHD7, Length 4,777 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-203ENST00000525508 DCAF8L2P0C7V8 631 aa15.02□□□□□ -0.01
CHD7-203ENST00000525508 SUPT5HO00267 1087 aaKnown RBP14.19□□□□□ -0.14
CHD7-203ENST00000525508 NISCHQ9Y2I1 1504 aa14.05□□□□□ -0.16
CHD7-203ENST00000525508 SHROOM4Q9ULL8 1493 aa14.02□□□□□ -0.17
CHD7-203ENST00000525508 EHMT2Q96KQ7 1210 aa13.9□□□□□ -0.18
CHD7-203ENST00000525508 FAM9AQ8IZU1 332 aaPredicted RBP13.44□□□□□ -0.26
CHD7-203ENST00000525508 TTBK1Q5TCY1 1321 aaPredicted RBP13.35□□□□□ -0.27
CHD7-203ENST00000525508 RANGAP1P46060 587 aaPredicted RBP13.22□□□□□ -0.29
CHD7-203ENST00000525508 PCGF6Q9BYE7 350 aa13.13□□□□□ -0.31
CHD7-203ENST00000525508 APLP2Q06481 763 aa13.12□□□□□ -0.31
CHD7-203ENST00000525508 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
CHD7-203ENST00000525508 ATP1B4Q9UN42 357 aaPredicted RBP12.95□□□□□ -0.34
CHD7-203ENST00000525508 PPARGC1BQ86YN6 1023 aaKnown RBP12.91□□□□□ -0.34
CHD7-203ENST00000525508 UBTFP17480 764 aaKnown RBP12.86□□□□□ -0.35
CHD7-203ENST00000525508 CCER1Q8TC90 406 aaPredicted RBP12.77□□□□□ -0.37
CHD7-203ENST00000525508 LOC105371045A0A1W2PR82 267 aa12.67□□□□□ -0.38
CHD7-203ENST00000525508 PELP1Q8IZL8 1130 aaKnown RBP12.61□□□□□ -0.39
CHD7-203ENST00000525508 ITGAEP38570 1179 aa12.57□□□□□ -0.4
CHD7-203ENST00000525508 YTHDC1Q96MU7 727 aaKnown RBP12.56□□□□□ -0.4
CHD7-203ENST00000525508 CHIC1Q5VXU3 224 aa12.5□□□□□ -0.41
CHD7-203ENST00000525508 PABPN1Q86U42 306 aaKnown RBP eCLIP12.47□□□□□ -0.41
CHD7-203ENST00000525508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
CHD7-203ENST00000525508 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
CHD7-203ENST00000525508 ZEB1P37275 1124 aaPredicted RBP12.45□□□□□ -0.42
CHD7-203ENST00000525508 CENPBP07199 599 aaPredicted RBP12.43□□□□□ -0.42
CHD7-203ENST00000525508 CNGB1Q14028 1251 aaPredicted RBP12.41□□□□□ -0.42
CHD7-203ENST00000525508 MYT1Q01538 1121 aa12.38□□□□□ -0.43
CHD7-203ENST00000525508 TRIM26Q12899 539 aaPredicted RBP12.38□□□□□ -0.43
CHD7-203ENST00000525508 ABCC9O60706 1549 aa12.37□□□□□ -0.43
CHD7-203ENST00000525508 MYT1LQ9UL68 1186 aa12.37□□□□□ -0.43
CHD7-203ENST00000525508 POLR3GLQ9BT43 218 aa12.35□□□□□ -0.43
CHD7-203ENST00000525508 HRCP23327 699 aa12.28□□□□□ -0.44
CHD7-203ENST00000525508 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
CHD7-203ENST00000525508 NEFLP07196 543 aa12.2□□□□□ -0.46
CHD7-203ENST00000525508 FAM50AQ14320 339 aaKnown RBP12.13□□□□□ -0.47
CHD7-203ENST00000525508 FBLN2P98095 1184 aa12.09□□□□□ -0.47
CHD7-203ENST00000525508 ARID3CA6NKF2 412 aa12.08□□□□□ -0.48
CHD7-203ENST00000525508 SLC4A1APQ9BWU0 796 aaKnown RBP12.06□□□□□ -0.48
CHD7-203ENST00000525508 NEUROD1Q13562 356 aa12.05□□□□□ -0.48
CHD7-203ENST00000525508 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
CHD7-203ENST00000525508 TRIM52Q96A61 297 aa12.02□□□□□ -0.49
CHD7-203ENST00000525508 DIEXFQ68CQ4 756 aaKnown RBP11.98□□□□□ -0.49
CHD7-203ENST00000525508 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
CHD7-203ENST00000525508 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
CHD7-203ENST00000525508 BCANQ96GW7 911 aa11.84□□□□□ -0.51
CHD7-203ENST00000525508 ZNF777Q9ULD5 760 aaPredicted RBP11.82□□□□□ -0.52
CHD7-203ENST00000525508 DAXXQ9UER7 740 aaPredicted RBP11.79□□□□□ -0.52
CHD7-203ENST00000525508 BCL11AQ9H165 835 aa11.75□□□□□ -0.53
CHD7-203ENST00000525508 SCRIBQ14160 1630 aa11.75□□□□□ -0.53
CHD7-203ENST00000525508 CLSPNQ9HAW4 1339 aa11.74□□□□□ -0.53
CHD7-203ENST00000525508 GTF3C3Q9Y5Q9 886 aa11.72□□□□□ -0.53
CHD7-203ENST00000525508 PLPPR3Q6T4P5 718 aa11.7□□□□□ -0.54
CHD7-203ENST00000525508 ANP32CO43423 234 aa11.68□□□□□ -0.54
CHD7-203ENST00000525508 ZNF316A6NFI3 1004 aaPredicted RBP11.67□□□□□ -0.54
CHD7-203ENST00000525508 CHIC2Q9UKJ5 165 aa11.66□□□□□ -0.54
CHD7-203ENST00000525508 SLC24A1O60721 1099 aa11.65□□□□□ -0.54
CHD7-203ENST00000525508 CHGAP10645 457 aaKnown RBP11.61□□□□□ -0.55
CHD7-203ENST00000525508 SENP3Q9H4L4 574 aaPredicted RBP11.6□□□□□ -0.55
CHD7-203ENST00000525508 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
CHD7-203ENST00000525508 ZCCHC6Q5VYS8 1495 aaKnown RBP11.57□□□□□ -0.56
CHD7-203ENST00000525508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.56□□□□□ -0.561e-6■■■□□ 15.5
CHD7-203ENST00000525508 SALL2Q9Y467 1007 aaPredicted RBP11.56□□□□□ -0.56
CHD7-203ENST00000525508 DDX10Q13206 875 aaKnown RBP11.56□□□□□ -0.56
CHD7-203ENST00000525508 CDK11AQ9UQ88 783 aaPredicted RBP11.55□□□□□ -0.56
CHD7-203ENST00000525508 ACIN1Q9UKV3 1341 aaKnown RBP11.51□□□□□ -0.57
CHD7-203ENST00000525508 KDM2AQ9Y2K7 1162 aa11.5□□□□□ -0.57
CHD7-203ENST00000525508 CANXP27824 592 aaKnown RBP11.48□□□□□ -0.57
CHD7-203ENST00000525508 FAM9BQ8IZU0 186 aa11.48□□□□□ -0.57
CHD7-203ENST00000525508 SENP3-EIF4A1A0A087X0R7 540 aa11.48□□□□□ -0.57
CHD7-203ENST00000525508 RTL5Q5HYW3 569 aaPredicted RBP11.48□□□□□ -0.57
CHD7-203ENST00000525508 TONSLQ96HA7 1378 aa11.48□□□□□ -0.57
CHD7-203ENST00000525508 STAG3Q9UJ98 1225 aa11.47□□□□□ -0.57
CHD7-203ENST00000525508 CHMP7Q8WUX9 453 aaPredicted RBP11.46□□□□□ -0.57
CHD7-203ENST00000525508 ESF1Q9H501 851 aaKnown RBP11.46□□□□□ -0.57
CHD7-203ENST00000525508 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.58
CHD7-203ENST00000525508 KCNH8Q96L42 1107 aa11.45□□□□□ -0.58
CHD7-203ENST00000525508 HNRNPUQ00839 825 aaKnown RBP eCLIP11.44□□□□□ -0.58
CHD7-203ENST00000525508 RRP7BPQ9NSQ0 103 aa11.44□□□□□ -0.58
CHD7-203ENST00000525508 MYO15BQ96JP2 1530 aa11.43□□□□□ -0.58
CHD7-203ENST00000525508 PLEKHG5O94827 1062 aa11.42□□□□□ -0.58
CHD7-203ENST00000525508 SCAF1Q9H7N4 1312 aaKnown RBP11.41□□□□□ -0.58
CHD7-203ENST00000525508 FKBP8Q14318 412 aa11.41□□□□□ -0.58
CHD7-203ENST00000525508 ZBTB47Q9UFB7 747 aaPredicted RBP11.41□□□□□ -0.58
CHD7-203ENST00000525508 NPM2Q86SE8 214 aaKnown RBP11.4□□□□□ -0.58
CHD7-203ENST00000525508 MTUS2Q5JR59 1369 aa11.4□□□□□ -0.58
CHD7-203ENST00000525508 NEFMP07197 916 aa11.4□□□□□ -0.58
CHD7-203ENST00000525508 TSPY4P0CV99 314 aa11.4□□□□□ -0.58
CHD7-203ENST00000525508 TSPY10P0CW01 314 aa11.4□□□□□ -0.58
CHD7-203ENST00000525508 RSF1Q96T23 1441 aaPredicted RBP11.39□□□□□ -0.59
CHD7-203ENST00000525508 CLIP1P30622 1438 aa11.37□□□□□ -0.59
CHD7-203ENST00000525508 RGL3Q3MIN7 710 aa11.36□□□□□ -0.59
CHD7-203ENST00000525508 MIER1Q8N108 512 aa11.36□□□□□ -0.59
CHD7-203ENST00000525508 IRX6P78412 446 aaPredicted RBP11.36□□□□□ -0.59
CHD7-203ENST00000525508 TMC1Q8TDI8 760 aa11.33□□□□□ -0.6
CHD7-203ENST00000525508 DCAF1Q9Y4B6 1507 aa11.31□□□□□ -0.6
CHD7-203ENST00000525508 MRS2Q9HD23 443 aa11.31□□□□□ -0.6
CHD7-203ENST00000525508 CEP162Q5TB80 1403 aa11.27□□□□□ -0.6
CHD7-203ENST00000525508 CECR2Q9BXF3 1484 aa11.27□□□□□ -0.61
CHD7-203ENST00000525508 PLEKHD1A6NEE1 506 aa11.26□□□□□ -0.61
CHD7-203ENST00000525508 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms