RNA–Protein interactions for RNA: ENST00000522006.5

LAMA4-219, Transcript of laminin subunit alpha 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LAMA4, Length 6,438 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAMA4-219ENST00000522006 DCAF8L2P0C7V8 631 aa19.38■□□□□ 0.69
LAMA4-219ENST00000522006 SUPT5HO00267 1087 aaKnown RBP18.52■□□□□ 0.56
LAMA4-219ENST00000522006 PELP1Q8IZL8 1130 aaKnown RBP18.26■□□□□ 0.51
LAMA4-219ENST00000522006 EHMT2Q96KQ7 1210 aa18.17■□□□□ 0.5
LAMA4-219ENST00000522006 SHROOM4Q9ULL8 1493 aa18.1■□□□□ 0.49
LAMA4-219ENST00000522006 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
LAMA4-219ENST00000522006 APLP2Q06481 763 aa17.81■□□□□ 0.44
LAMA4-219ENST00000522006 ERICH6Q7L0X2 663 aa17.61■□□□□ 0.41
LAMA4-219ENST00000522006 TTBK1Q5TCY1 1321 aaPredicted RBP17.6■□□□□ 0.41
LAMA4-219ENST00000522006 PCGF6Q9BYE7 350 aa17.54■□□□□ 0.4
LAMA4-219ENST00000522006 FAM9AQ8IZU1 332 aaPredicted RBP17.54■□□□□ 0.4
LAMA4-219ENST00000522006 CENPBP07199 599 aaPredicted RBP17.48■□□□□ 0.39
LAMA4-219ENST00000522006 CCER1Q8TC90 406 aaPredicted RBP17.44■□□□□ 0.38
LAMA4-219ENST00000522006 ZEB1P37275 1124 aaPredicted RBP17.32■□□□□ 0.36
LAMA4-219ENST00000522006 RANGAP1P46060 587 aaPredicted RBP17.29■□□□□ 0.36
LAMA4-219ENST00000522006 MYT1Q01538 1121 aa17.22■□□□□ 0.35
LAMA4-219ENST00000522006 ATP1B4Q9UN42 357 aaPredicted RBP17.16■□□□□ 0.34
LAMA4-219ENST00000522006 NEFLP07196 543 aa17.14■□□□□ 0.33
LAMA4-219ENST00000522006 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
LAMA4-219ENST00000522006 TRIM41Q8WV44 630 aa17.1■□□□□ 0.33
LAMA4-219ENST00000522006 UBTFP17480 764 aaKnown RBP16.98■□□□□ 0.31
LAMA4-219ENST00000522006 PPARGC1BQ86YN6 1023 aaKnown RBP16.82■□□□□ 0.28
LAMA4-219ENST00000522006 DAXXQ9UER7 740 aaPredicted RBP16.75■□□□□ 0.27
LAMA4-219ENST00000522006 TRIM26Q12899 539 aaPredicted RBP16.69■□□□□ 0.26
LAMA4-219ENST00000522006 POLR3GLQ9BT43 218 aa16.63■□□□□ 0.25
LAMA4-219ENST00000522006 HRCP23327 699 aa16.6■□□□□ 0.25
LAMA4-219ENST00000522006 ITGAEP38570 1179 aa16.58■□□□□ 0.24
LAMA4-219ENST00000522006 MYT1LQ9UL68 1186 aa16.5■□□□□ 0.23
LAMA4-219ENST00000522006 CNGB1Q14028 1251 aaPredicted RBP16.48■□□□□ 0.23
LAMA4-219ENST00000522006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
LAMA4-219ENST00000522006 HNRNPUL2Q1KMD3 747 aaKnown RBP16.45■□□□□ 0.22
LAMA4-219ENST00000522006 ZNF316A6NFI3 1004 aaPredicted RBP16.38■□□□□ 0.21
LAMA4-219ENST00000522006 RTL5Q5HYW3 569 aaPredicted RBP16.37■□□□□ 0.21
LAMA4-219ENST00000522006 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
LAMA4-219ENST00000522006 SLC4A1APQ9BWU0 796 aaKnown RBP16.31■□□□□ 0.2
LAMA4-219ENST00000522006 CLSPNQ9HAW4 1339 aa16.3■□□□□ 0.2
LAMA4-219ENST00000522006 CHIC1Q5VXU3 224 aa16.27■□□□□ 0.2
LAMA4-219ENST00000522006 DIEXFQ68CQ4 756 aaKnown RBP16.26■□□□□ 0.19
LAMA4-219ENST00000522006 BCANQ96GW7 911 aa16.12■□□□□ 0.17
LAMA4-219ENST00000522006 FAM50AQ14320 339 aaKnown RBP16.1■□□□□ 0.17
LAMA4-219ENST00000522006 TRIM52Q96A61 297 aa16.05■□□□□ 0.16
LAMA4-219ENST00000522006 NEUROD1Q13562 356 aa16.04■□□□□ 0.16
LAMA4-219ENST00000522006 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
LAMA4-219ENST00000522006 CDK11AQ9UQ88 783 aaPredicted RBP16■□□□□ 0.15
LAMA4-219ENST00000522006 ANP32CO43423 234 aa15.97■□□□□ 0.15
LAMA4-219ENST00000522006 ZBTB47Q9UFB7 747 aaPredicted RBP15.93■□□□□ 0.14
LAMA4-219ENST00000522006 ZNF326Q5BKZ1 582 aaKnown RBP15.91■□□□□ 0.14
LAMA4-219ENST00000522006 CANXP27824 592 aaKnown RBP15.86■□□□□ 0.13
LAMA4-219ENST00000522006 BCL11AQ9H165 835 aa15.84■□□□□ 0.13
LAMA4-219ENST00000522006 SLC24A1O60721 1099 aa15.78■□□□□ 0.12
LAMA4-219ENST00000522006 ANP32AP39687 249 aaKnown RBP15.76■□□□□ 0.11
LAMA4-219ENST00000522006 ACIN1Q9UKV3 1341 aaKnown RBP15.72■□□□□ 0.11
LAMA4-219ENST00000522006 NPM2Q86SE8 214 aaKnown RBP15.72■□□□□ 0.11
LAMA4-219ENST00000522006 NEFMP07197 916 aa15.69■□□□□ 0.1
LAMA4-219ENST00000522006 EIF5BO60841 1220 aaKnown RBP15.6■□□□□ 0.09
LAMA4-219ENST00000522006 PABPN1Q86U42 306 aaKnown RBP eCLIP15.59■□□□□ 0.09
LAMA4-219ENST00000522006 FBLN2P98095 1184 aa15.58■□□□□ 0.09
LAMA4-219ENST00000522006 ANP32BQ92688 251 aaKnown RBP15.58■□□□□ 0.08
LAMA4-219ENST00000522006 FKBP8Q14318 412 aa15.57■□□□□ 0.08
LAMA4-219ENST00000522006 ARID3CA6NKF2 412 aa15.55■□□□□ 0.08
LAMA4-219ENST00000522006 P3H3Q8IVL6 736 aa15.54■□□□□ 0.08
LAMA4-219ENST00000522006 HSP90AA1P07900 732 aaKnown RBP15.52■□□□□ 0.08
LAMA4-219ENST00000522006 ABCC9O60706 1549 aa15.49■□□□□ 0.07
LAMA4-219ENST00000522006 ZNF777Q9ULD5 760 aaPredicted RBP15.49■□□□□ 0.07
LAMA4-219ENST00000522006 UPF2Q9HAU5 1272 aaKnown RBP15.47■□□□□ 0.07
LAMA4-219ENST00000522006 HNRNPUQ00839 825 aaKnown RBP eCLIP15.44■□□□□ 0.06
LAMA4-219ENST00000522006 FAM9BQ8IZU0 186 aa15.42■□□□□ 0.06
LAMA4-219ENST00000522006 TONSLQ96HA7 1378 aa15.42■□□□□ 0.06
LAMA4-219ENST00000522006 NBR1Q14596 966 aa15.41■□□□□ 0.06
LAMA4-219ENST00000522006 GLIPR1L2Q4G1C9 344 aa15.4■□□□□ 0.06
LAMA4-219ENST00000522006 CSRNP3Q8WYN3 585 aa15.38■□□□□ 0.05
LAMA4-219ENST00000522006 SALL2Q9Y467 1007 aaPredicted RBP15.37■□□□□ 0.05
LAMA4-219ENST00000522006 DDX10Q13206 875 aaKnown RBP15.36■□□□□ 0.05
LAMA4-219ENST00000522006 ARXQ96QS3 562 aa15.35■□□□□ 0.05
LAMA4-219ENST00000522006 CCDC136Q96JN2 1154 aa15.34■□□□□ 0.05
LAMA4-219ENST00000522006 CHGAP10645 457 aaKnown RBP15.33■□□□□ 0.05
LAMA4-219ENST00000522006 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.29■□□□□ 0.04
LAMA4-219ENST00000522006 STAG3Q9UJ98 1225 aa15.29■□□□□ 0.04
LAMA4-219ENST00000522006 ESF1Q9H501 851 aaKnown RBP15.28■□□□□ 0.04
LAMA4-219ENST00000522006 TMC1Q8TDI8 760 aa15.27■□□□□ 0.04
LAMA4-219ENST00000522006 WDR43Q15061 677 aaKnown RBP eCLIP15.24■□□□□ 0.03
LAMA4-219ENST00000522006 IRX6P78412 446 aaPredicted RBP15.22■□□□□ 0.03
LAMA4-219ENST00000522006 PLPPR3Q6T4P5 718 aa15.2■□□□□ 0.02
LAMA4-219ENST00000522006 DCAF1Q9Y4B6 1507 aa15.2■□□□□ 0.02
LAMA4-219ENST00000522006 MRS2Q9HD23 443 aa15.2■□□□□ 0.02
LAMA4-219ENST00000522006 CHIC2Q9UKJ5 165 aa15.18■□□□□ 0.02
LAMA4-219ENST00000522006 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.17■□□□□ 0.02
LAMA4-219ENST00000522006 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
LAMA4-219ENST00000522006 MYH16Q9H6N6 1097 aa15.14■□□□□ 0.01
LAMA4-219ENST00000522006 KDM2AQ9Y2K7 1162 aa15.13■□□□□ 0.01
LAMA4-219ENST00000522006 MIER1Q8N108 512 aa15.13■□□□□ 0.01
LAMA4-219ENST00000522006 DDRGK1Q96HY6 314 aa15.11■□□□□ 0.01
LAMA4-219ENST00000522006 BECN1Q14457 450 aa15.09■□□□□ 0.01
LAMA4-219ENST00000522006 HIRIP3Q9BW71 556 aaPredicted RBP15.09■□□□□ 0.01
LAMA4-219ENST00000522006 CDK11BP21127 795 aaKnown RBP15.08■□□□□ 0
LAMA4-219ENST00000522006 TRIM44Q96DX7 344 aaPredicted RBP15.07■□□□□ 0
LAMA4-219ENST00000522006 NCLP19338 710 aaKnown RBP15.06■□□□□ 0
LAMA4-219ENST00000522006 SCRIBQ14160 1630 aa15.05■□□□□ -0
LAMA4-219ENST00000522006 NPM1P06748 294 aaKnown RBP eCLIP15.03■□□□□ -0
LAMA4-219ENST00000522006 GOLGA6L22H0YM25 854 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms