RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 AEBP2Q6ZN18 517 aaPredicted RBP18.22■□□□□ 0.51
HMGB1P23-201ENST00000518743 CHIC1Q5VXU3 224 aa17.5■□□□□ 0.39
HMGB1P23-201ENST00000518743 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
HMGB1P23-201ENST00000518743 PHF23Q9BUL5 403 aaPredicted RBP15.42■□□□□ 0.06
HMGB1P23-201ENST00000518743 FOXD1Q16676 465 aa14.41□□□□□ -0.1
HMGB1P23-201ENST00000518743 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
HMGB1P23-201ENST00000518743 PPP6R1Q9UPN7 881 aa13.71□□□□□ -0.21
HMGB1P23-201ENST00000518743 ADRA2BP18089 450 aa13.7□□□□□ -0.22
HMGB1P23-201ENST00000518743 PIAS4Q8N2W9 510 aaPredicted RBP13.52□□□□□ -0.25
HMGB1P23-201ENST00000518743 MSH5O43196 834 aa13.3□□□□□ -0.28
HMGB1P23-201ENST00000518743 KCNA4P22459 653 aa12.78□□□□□ -0.36
HMGB1P23-201ENST00000518743 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
HMGB1P23-201ENST00000518743 POTEDQ86YR6 584 aa12.6□□□□□ -0.39
HMGB1P23-201ENST00000518743 MAPK8IP2Q13387 824 aaPredicted RBP12.51□□□□□ -0.41
HMGB1P23-201ENST00000518743 NCBP3Q53F19 620 aaKnown RBP12.48□□□□□ -0.41
HMGB1P23-201ENST00000518743 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
HMGB1P23-201ENST00000518743 SCAF1Q9H7N4 1312 aaKnown RBP12.42□□□□□ -0.42
HMGB1P23-201ENST00000518743 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
HMGB1P23-201ENST00000518743 DMRT2Q9Y5R5 561 aa12.29□□□□□ -0.44
HMGB1P23-201ENST00000518743 CSRNP3Q8WYN3 585 aa12.2□□□□□ -0.46
HMGB1P23-201ENST00000518743 NPM3O75607 178 aaKnown RBP12.1□□□□□ -0.47
HMGB1P23-201ENST00000518743 CNKSR2Q8WXI2 1034 aa12.09□□□□□ -0.47
HMGB1P23-201ENST00000518743 HOXD11P31277 338 aaPredicted RBP11.92□□□□□ -0.5
HMGB1P23-201ENST00000518743 RNF216Q9NWF9 866 aaPredicted RBP11.9□□□□□ -0.5
HMGB1P23-201ENST00000518743 DCAF8L1A6NGE4 600 aa11.86□□□□□ -0.51
HMGB1P23-201ENST00000518743 DNAJC5BQ9UF47 199 aa11.82□□□□□ -0.52
HMGB1P23-201ENST00000518743 FOXD4L1Q9NU39 408 aa11.72□□□□□ -0.53
HMGB1P23-201ENST00000518743 ZBTB22O15209 634 aa11.69□□□□□ -0.54
HMGB1P23-201ENST00000518743 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.42□□□□□ -0.58
HMGB1P23-201ENST00000518743 RNF39Q9H2S5 420 aa11.41□□□□□ -0.58
HMGB1P23-201ENST00000518743 ATXN8OSP0DMR3 200 aa11.35□□□□□ -0.59
HMGB1P23-201ENST00000518743 CACNB1Q02641 598 aaPredicted RBP11.31□□□□□ -0.6
HMGB1P23-201ENST00000518743 MYCNP04198 464 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P23-201ENST00000518743 AMER1Q5JTC6 1135 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P23-201ENST00000518743 SLC4A2P04920 1241 aa11.27□□□□□ -0.61
HMGB1P23-201ENST00000518743 C1QBPQ07021 282 aaKnown RBP11.22□□□□□ -0.61
HMGB1P23-201ENST00000518743 U3KPZ7 1027 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P23-201ENST00000518743 SLC24A1O60721 1099 aa11.11□□□□□ -0.63
HMGB1P23-201ENST00000518743 RTN4Q9NQC3 1192 aaKnown RBP11.06□□□□□ -0.64
HMGB1P23-201ENST00000518743 FKBP8Q14318 412 aa11.05□□□□□ -0.64
HMGB1P23-201ENST00000518743 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.04□□□□□ -0.64
HMGB1P23-201ENST00000518743 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
HMGB1P23-201ENST00000518743 SPINK5Q9NQ38 1064 aaPredicted RBP11□□□□□ -0.65
HMGB1P23-201ENST00000518743 ABCC9O60706 1549 aa10.99□□□□□ -0.65
HMGB1P23-201ENST00000518743 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
HMGB1P23-201ENST00000518743 CAPN15O75808 1086 aa10.94□□□□□ -0.66
HMGB1P23-201ENST00000518743 TRHP20396 242 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P23-201ENST00000518743 APLP2Q06481 763 aa10.83□□□□□ -0.68
HMGB1P23-201ENST00000518743 DSG3P32926 999 aa10.79□□□□□ -0.68
HMGB1P23-201ENST00000518743 DNAJC5Q9H3Z4 198 aa10.79□□□□□ -0.68
HMGB1P23-201ENST00000518743 ABCB7O75027 752 aa10.75□□□□□ -0.69
HMGB1P23-201ENST00000518743 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P23-201ENST00000518743 ATF5Q9Y2D1 282 aaPredicted RBP10.74□□□□□ -0.69
HMGB1P23-201ENST00000518743 NISCHQ9Y2I1 1504 aa10.69□□□□□ -0.7
HMGB1P23-201ENST00000518743 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
HMGB1P23-201ENST00000518743 POLA2Q14181 598 aa10.61□□□□□ -0.71
HMGB1P23-201ENST00000518743 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
HMGB1P23-201ENST00000518743 FBLN2P98095 1184 aa10.5□□□□□ -0.73
HMGB1P23-201ENST00000518743 PROM2Q8N271 834 aa10.41□□□□□ -0.74
HMGB1P23-201ENST00000518743 VASPP50552 380 aaPredicted RBP10.37□□□□□ -0.75
HMGB1P23-201ENST00000518743 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
HMGB1P23-201ENST00000518743 MKRN4PQ13434 485 aaPredicted RBP10.32□□□□□ -0.76
HMGB1P23-201ENST00000518743 PLCB2Q00722 1185 aa10.31□□□□□ -0.76
HMGB1P23-201ENST00000518743 OSCARQ8IYS5 282 aa10.27□□□□□ -0.77
HMGB1P23-201ENST00000518743 RBM42Q9BTD8 480 aaKnown RBP10.23□□□□□ -0.77
HMGB1P23-201ENST00000518743 DCAF8L2P0C7V8 631 aa10.2□□□□□ -0.78
HMGB1P23-201ENST00000518743 IFNLR1Q8IU57 520 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P23-201ENST00000518743 HAP1P54257 671 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P23-201ENST00000518743 STAG3Q9UJ98 1225 aa10.14□□□□□ -0.79
HMGB1P23-201ENST00000518743 TRIM41Q8WV44 630 aa10.11□□□□□ -0.79
HMGB1P23-201ENST00000518743 VSIG10Q8N0Z9 540 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 KLHL34Q8N239 644 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 SPOCK2Q92563 424 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 BCANQ96GW7 911 aa10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.1□□□□□ -0.79
HMGB1P23-201ENST00000518743 PKD2Q13563 968 aa10.09□□□□□ -0.79
HMGB1P23-201ENST00000518743 PABPN1Q86U42 306 aaKnown RBP eCLIP10.09□□□□□ -0.79
HMGB1P23-201ENST00000518743 AKT1S1Q96B36 256 aa10.07□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE2BA6NHP3 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE6P0CI01 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 SPDYE2Q495Y8 402 aa10.05□□□□□ -0.8
HMGB1P23-201ENST00000518743 REM2Q8IYK8 340 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 BBXQ8WY36 941 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 ZNF692Q9BU19 519 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P23-201ENST00000518743 CCDC180Q9P1Z9 1646 aa10.02□□□□□ -0.81
HMGB1P23-201ENST00000518743 RB1CC1Q8TDY2 1594 aa10.01□□□□□ -0.81
HMGB1P23-201ENST00000518743 ECM2O94769 699 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P23-201ENST00000518743 PLEKHG5O94827 1062 aa10□□□□□ -0.81
HMGB1P23-201ENST00000518743 PLCD3Q8N3E9 789 aa10□□□□□ -0.81
HMGB1P23-201ENST00000518743 ZBTB47Q9UFB7 747 aaPredicted RBP10□□□□□ -0.81
HMGB1P23-201ENST00000518743 CECR2Q9BXF3 1484 aa9.97□□□□□ -0.81
HMGB1P23-201ENST00000518743 CHRDL2Q6WN34 429 aa9.96□□□□□ -0.82
HMGB1P23-201ENST00000518743 SSUH2Q9Y2M2 353 aa9.95□□□□□ -0.82
HMGB1P23-201ENST00000518743 PITPNM1O00562 1244 aa9.92□□□□□ -0.82
HMGB1P23-201ENST00000518743 MIER1Q8N108 512 aa9.92□□□□□ -0.82
HMGB1P23-201ENST00000518743 POTEHQ6S545 545 aa9.91□□□□□ -0.82
HMGB1P23-201ENST00000518743 PAXIP1Q6ZW49 1069 aaPredicted RBP9.87□□□□□ -0.83
HMGB1P23-201ENST00000518743 SPRYD3Q8NCJ5 442 aa9.86□□□□□ -0.83
HMGB1P23-201ENST00000518743 CLEC11AQ9Y240 323 aa9.85□□□□□ -0.83
HMGB1P23-201ENST00000518743 CFAP44Q96MT7 982 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms