RNA–Protein interactions for RNA: ENST00000517378.1

CDH12-203, Transcript of cadherin 12, humanhuman

TSL 1 (best)

Gene CDH12, Length 2,843 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12-203ENST00000517378 NISCHQ9Y2I1 1504 aa13.94□□□□□ -0.18
CDH12-203ENST00000517378 CCDC180Q9P1Z9 1646 aa11.95□□□□□ -0.5
CDH12-203ENST00000517378 ZCCHC6Q5VYS8 1495 aaKnown RBP11.84□□□□□ -0.51
CDH12-203ENST00000517378 SHROOM4Q9ULL8 1493 aa11.66□□□□□ -0.54
CDH12-203ENST00000517378 DCAF1Q9Y4B6 1507 aa11.55□□□□□ -0.56
CDH12-203ENST00000517378 SUPT5HO00267 1087 aaKnown RBP11.44□□□□□ -0.58
CDH12-203ENST00000517378 MYO15BQ96JP2 1530 aa11.27□□□□□ -0.6
CDH12-203ENST00000517378 CHIC1Q5VXU3 224 aa11.26□□□□□ -0.61
CDH12-203ENST00000517378 ABCC9O60706 1549 aa11.2□□□□□ -0.62
CDH12-203ENST00000517378 DCAF8L2P0C7V8 631 aa11.2□□□□□ -0.62
CDH12-203ENST00000517378 SCRIBQ14160 1630 aa11.03□□□□□ -0.64
CDH12-203ENST00000517378 HRCP23327 699 aa11.01□□□□□ -0.65
CDH12-203ENST00000517378 RSF1Q96T23 1441 aaPredicted RBP11□□□□□ -0.65
CDH12-203ENST00000517378 NACADO15069 1562 aa10.97□□□□□ -0.65
CDH12-203ENST00000517378 RB1CC1Q8TDY2 1594 aa10.95□□□□□ -0.66
CDH12-203ENST00000517378 PCGF6Q9BYE7 350 aa10.86□□□□□ -0.67
CDH12-203ENST00000517378 LOC105371045A0A1W2PR82 267 aa10.83□□□□□ -0.68
CDH12-203ENST00000517378 MROH2BQ7Z745 1585 aa10.79□□□□□ -0.68
CDH12-203ENST00000517378 CECR2Q9BXF3 1484 aa10.78□□□□□ -0.68
CDH12-203ENST00000517378 BAZ1AQ9NRL2 1556 aaPredicted RBP10.77□□□□□ -0.69
CDH12-203ENST00000517378 TRIM26Q12899 539 aaPredicted RBP10.75□□□□□ -0.69
CDH12-203ENST00000517378 EIF4G1Q04637 1599 aaKnown RBP10.75□□□□□ -0.69
CDH12-203ENST00000517378 WIZO95785 1651 aa10.75□□□□□ -0.69
CDH12-203ENST00000517378 TRIM41Q8WV44 630 aa10.71□□□□□ -0.69
CDH12-203ENST00000517378 PPARGC1BQ86YN6 1023 aaKnown RBP10.64□□□□□ -0.71
CDH12-203ENST00000517378 TOP2AP11388 1531 aaKnown RBP10.64□□□□□ -0.71
CDH12-203ENST00000517378 UNC13AQ9UPW8 1703 aa10.63□□□□□ -0.71
CDH12-203ENST00000517378 SMARCA4P51532 1647 aa10.62□□□□□ -0.71
CDH12-203ENST00000517378 ZEB1P37275 1124 aaPredicted RBP10.57□□□□□ -0.72
CDH12-203ENST00000517378 SMARCA2P51531 1590 aa10.56□□□□□ -0.72
CDH12-203ENST00000517378 FAM9AQ8IZU1 332 aaPredicted RBP10.52□□□□□ -0.73
CDH12-203ENST00000517378 CCDC88BA6NC98 1476 aa10.51□□□□□ -0.73
CDH12-203ENST00000517378 PEG3Q9GZU2 1588 aa10.49□□□□□ -0.73
CDH12-203ENST00000517378 ABCC8Q09428 1581 aa10.47□□□□□ -0.73
CDH12-203ENST00000517378 BICRAQ9NZM4 1560 aa10.46□□□□□ -0.73
CDH12-203ENST00000517378 WRNQ14191 1432 aaPredicted RBP eCLIP10.46□□□□□ -0.73
CDH12-203ENST00000517378 EEA1Q15075 1411 aa10.44□□□□□ -0.74
CDH12-203ENST00000517378 TNIKQ9UKE5 1360 aa10.38□□□□□ -0.75
CDH12-203ENST00000517378 CEP162Q5TB80 1403 aa10.37□□□□□ -0.75
CDH12-203ENST00000517378 SOGA1O94964 1423 aa10.36□□□□□ -0.75
CDH12-203ENST00000517378 EHMT2Q96KQ7 1210 aa10.34□□□□□ -0.75
CDH12-203ENST00000517378 KIF21BO75037 1637 aa10.33□□□□□ -0.76
CDH12-203ENST00000517378 GOLGA3Q08378 1498 aa10.32□□□□□ -0.76
CDH12-203ENST00000517378 SYNJ1O43426 1573 aa10.3□□□□□ -0.76
CDH12-203ENST00000517378 RUSC2Q8N2Y8 1516 aa10.3□□□□□ -0.76
CDH12-203ENST00000517378 ATAD2BQ9ULI0 1458 aa10.29□□□□□ -0.76
CDH12-203ENST00000517378 CSRNP3Q8WYN3 585 aa10.29□□□□□ -0.76
CDH12-203ENST00000517378 CEP164Q9UPV0 1460 aa10.27□□□□□ -0.77
CDH12-203ENST00000517378 BAZ1BQ9UIG0 1483 aaKnown RBP10.25□□□□□ -0.77
CDH12-203ENST00000517378 PABPN1Q86U42 306 aaKnown RBP eCLIP10.22□□□□□ -0.77
CDH12-203ENST00000517378 TOP2BQ02880 1626 aa10.22□□□□□ -0.77
CDH12-203ENST00000517378 BIVM-ERCC5R4GMW8 1640 aa10.22□□□□□ -0.77
CDH12-203ENST00000517378 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.21□□□□□ -0.77
CDH12-203ENST00000517378 CCER1Q8TC90 406 aaPredicted RBP10.2□□□□□ -0.78
CDH12-203ENST00000517378 HMGXB3Q12766 1538 aa10.17□□□□□ -0.78
CDH12-203ENST00000517378 VPS8Q8N3P4 1428 aa10.16□□□□□ -0.78
CDH12-203ENST00000517378 UBTFP17480 764 aaKnown RBP10.16□□□□□ -0.78
CDH12-203ENST00000517378 CLIP1P30622 1438 aa10.16□□□□□ -0.78
CDH12-203ENST00000517378 ERICH3Q5RHP9 1530 aa10.15□□□□□ -0.78
CDH12-203ENST00000517378 RAPGEF2Q9Y4G8 1499 aa10.14□□□□□ -0.79
CDH12-203ENST00000517378 SCAF1Q9H7N4 1312 aaKnown RBP10.12□□□□□ -0.79
CDH12-203ENST00000517378 NCAPD3P42695 1498 aa10.12□□□□□ -0.79
CDH12-203ENST00000517378 PRXQ9BXM0 1461 aa10.1□□□□□ -0.79
CDH12-203ENST00000517378 PRDM2Q13029 1718 aa10.09□□□□□ -0.79
CDH12-203ENST00000517378 DIEXFQ68CQ4 756 aaKnown RBP10.06□□□□□ -0.8
CDH12-203ENST00000517378 CUX1P39880 1505 aa10.06□□□□□ -0.8
CDH12-203ENST00000517378 PELP1Q8IZL8 1130 aaKnown RBP10.06□□□□□ -0.8
CDH12-203ENST00000517378 TTBK1Q5TCY1 1321 aaPredicted RBP10.05□□□□□ -0.8
CDH12-203ENST00000517378 CFTRP13569 1480 aa10.04□□□□□ -0.8
CDH12-203ENST00000517378 ARAP1Q96P48 1450 aa10.04□□□□□ -0.8
CDH12-203ENST00000517378 ACIN1Q9UKV3 1341 aaKnown RBP10.04□□□□□ -0.8
CDH12-203ENST00000517378 ZNF316A6NFI3 1004 aaPredicted RBP10.01□□□□□ -0.81
CDH12-203ENST00000517378 AEBP2Q6ZN18 517 aaPredicted RBP10□□□□□ -0.81
CDH12-203ENST00000517378 KIF27Q86VH2 1401 aa10□□□□□ -0.81
CDH12-203ENST00000517378 NEUROD1Q13562 356 aa9.99□□□□□ -0.81
CDH12-203ENST00000517378 CLSPNQ9HAW4 1339 aa9.97□□□□□ -0.81
CDH12-203ENST00000517378 CENPBP07199 599 aaPredicted RBP9.97□□□□□ -0.81
CDH12-203ENST00000517378 RRBP1Q9P2E9 1410 aaKnown RBP9.97□□□□□ -0.81
CDH12-203ENST00000517378 APLP2Q06481 763 aa9.97□□□□□ -0.81
CDH12-203ENST00000517378 CUX2O14529 1486 aa9.96□□□□□ -0.81
CDH12-203ENST00000517378 HNRNPUL2Q1KMD3 747 aaKnown RBP9.94□□□□□ -0.82
CDH12-203ENST00000517378 ARHGAP35Q9NRY4 1499 aa9.93□□□□□ -0.82
CDH12-203ENST00000517378 MAP3K1Q13233 1512 aa9.93□□□□□ -0.82
CDH12-203ENST00000517378 DHX57Q6P158 1386 aaKnown RBP9.91□□□□□ -0.82
CDH12-203ENST00000517378 TIAM1Q13009 1591 aa9.88□□□□□ -0.83
CDH12-203ENST00000517378 KANK4Q5T7N3 995 aaPredicted RBP9.87□□□□□ -0.83
CDH12-203ENST00000517378 CADPSQ9ULU8 1353 aa9.87□□□□□ -0.83
CDH12-203ENST00000517378 GTF3C3Q9Y5Q9 886 aa9.87□□□□□ -0.83
CDH12-203ENST00000517378 IGF1RP08069 1367 aa9.86□□□□□ -0.83
CDH12-203ENST00000517378 CFAP43Q8NDM7 1665 aa9.86□□□□□ -0.83
CDH12-203ENST00000517378 CCNB3Q8WWL7 1395 aa9.85□□□□□ -0.83
CDH12-203ENST00000517378 FGD5Q6ZNL6 1462 aa9.85□□□□□ -0.83
CDH12-203ENST00000517378 RANGAP1P46060 587 aaPredicted RBP9.83□□□□□ -0.84
CDH12-203ENST00000517378 MIER1Q8N108 512 aa9.83□□□□□ -0.84
CDH12-203ENST00000517378 DNMBPQ6XZF7 1577 aa9.81□□□□□ -0.84
CDH12-203ENST00000517378 CARMIL1Q5VZK9 1371 aa9.81□□□□□ -0.84
CDH12-203ENST00000517378 CC2D2AQ9P2K1 1620 aa9.81□□□□□ -0.84
CDH12-203ENST00000517378 LRRC9Q6ZRR7 1453 aa9.8□□□□□ -0.84
CDH12-203ENST00000517378 CUL7Q14999 1698 aa9.79□□□□□ -0.84
CDH12-203ENST00000517378 EFCAB5A4FU69 1503 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 294 ms