RNA–Protein interactions for RNA: ENST00000514949.1

SNX2-213, Transcript of sorting nexin 2, humanhuman

TSL 2 BASIC

Gene SNX2, Length 2,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX2-213ENST00000514949 NISCHQ9Y2I1 1504 aa36.82■■■■□ 3.48
SNX2-213ENST00000514949 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
SNX2-213ENST00000514949 ZCCHC6Q5VYS8 1495 aaKnown RBP31.17■■■□□ 2.58
SNX2-213ENST00000514949 SHROOM4Q9ULL8 1493 aa30.87■■■□□ 2.53
SNX2-213ENST00000514949 DCAF1Q9Y4B6 1507 aa30.43■■■□□ 2.46
SNX2-213ENST00000514949 SUPT5HO00267 1087 aaKnown RBP30.28■■■□□ 2.44
SNX2-213ENST00000514949 DCAF8L2P0C7V8 631 aa30.04■■■□□ 2.4
SNX2-213ENST00000514949 CHIC1Q5VXU3 224 aa29.64■■■□□ 2.34
SNX2-213ENST00000514949 MYO15BQ96JP2 1530 aa29.64■■■□□ 2.33
SNX2-213ENST00000514949 ABCC9O60706 1549 aa29.38■■■□□ 2.29
SNX2-213ENST00000514949 SCRIBQ14160 1630 aa29.17■■■□□ 2.26
SNX2-213ENST00000514949 NACADO15069 1562 aa29.08■■■□□ 2.25
SNX2-213ENST00000514949 RSF1Q96T23 1441 aaPredicted RBP29.05■■■□□ 2.24
SNX2-213ENST00000514949 RB1CC1Q8TDY2 1594 aa28.79■■■□□ 2.2
SNX2-213ENST00000514949 HRCP23327 699 aa28.6■■■□□ 2.17
SNX2-213ENST00000514949 LOC105371045A0A1W2PR82 267 aa28.57■■■□□ 2.16
SNX2-213ENST00000514949 CECR2Q9BXF3 1484 aa28.56■■■□□ 2.16
SNX2-213ENST00000514949 MROH2BQ7Z745 1585 aa28.52■■■□□ 2.16
SNX2-213ENST00000514949 PCGF6Q9BYE7 350 aa28.46■■■□□ 2.15
SNX2-213ENST00000514949 TRIM41Q8WV44 630 aa28.37■■■□□ 2.13
SNX2-213ENST00000514949 WIZO95785 1651 aa28.33■■■□□ 2.13
SNX2-213ENST00000514949 BAZ1AQ9NRL2 1556 aaPredicted RBP28.31■■■□□ 2.12
SNX2-213ENST00000514949 TRIM26Q12899 539 aaPredicted RBP28.15■■■□□ 2.1
SNX2-213ENST00000514949 EIF4G1Q04637 1599 aaKnown RBP28.1■■■□□ 2.09
SNX2-213ENST00000514949 UNC13AQ9UPW8 1703 aa28.07■■■□□ 2.08
SNX2-213ENST00000514949 SMARCA4P51532 1647 aa28.04■■■□□ 2.08
SNX2-213ENST00000514949 TOP2AP11388 1531 aaKnown RBP28.03■■■□□ 2.08
SNX2-213ENST00000514949 FAM9AQ8IZU1 332 aaPredicted RBP27.89■■■□□ 2.06
SNX2-213ENST00000514949 SMARCA2P51531 1590 aa27.83■■■□□ 2.05
SNX2-213ENST00000514949 CCDC88BA6NC98 1476 aa27.81■■■□□ 2.04
SNX2-213ENST00000514949 BICRAQ9NZM4 1560 aa27.75■■■□□ 2.03
SNX2-213ENST00000514949 PPARGC1BQ86YN6 1023 aaKnown RBP27.74■■■□□ 2.03
SNX2-213ENST00000514949 PEG3Q9GZU2 1588 aa27.67■■■□□ 2.02
SNX2-213ENST00000514949 ZEB1P37275 1124 aaPredicted RBP27.61■■■□□ 2.01
SNX2-213ENST00000514949 ABCC8Q09428 1581 aa27.59■■■□□ 2.01
SNX2-213ENST00000514949 EEA1Q15075 1411 aa27.47■■□□□ 1.99
SNX2-213ENST00000514949 PABPN1Q86U42 306 aaKnown RBP eCLIP27.46■■□□□ 1.99
SNX2-213ENST00000514949 EHMT2Q96KQ7 1210 aa27.46■■□□□ 1.99
SNX2-213ENST00000514949 WRNQ14191 1432 aaPredicted RBP eCLIP27.38■■□□□ 1.97
SNX2-213ENST00000514949 SOGA1O94964 1423 aa27.35■■□□□ 1.97
SNX2-213ENST00000514949 ATAD2BQ9ULI0 1458 aa27.33■■□□□ 1.97
SNX2-213ENST00000514949 TNIKQ9UKE5 1360 aa27.32■■□□□ 1.96
SNX2-213ENST00000514949 CSRNP3Q8WYN3 585 aa27.25■■□□□ 1.95
SNX2-213ENST00000514949 CEP162Q5TB80 1403 aa27.25■■□□□ 1.95
SNX2-213ENST00000514949 BAZ1BQ9UIG0 1483 aaKnown RBP27.2■■□□□ 1.94
SNX2-213ENST00000514949 RUSC2Q8N2Y8 1516 aa27.18■■□□□ 1.94
SNX2-213ENST00000514949 GOLGA3Q08378 1498 aa27.14■■□□□ 1.94
SNX2-213ENST00000514949 SYNJ1O43426 1573 aa27.12■■□□□ 1.93
SNX2-213ENST00000514949 KIF21BO75037 1637 aa27.06■■□□□ 1.92
SNX2-213ENST00000514949 CEP164Q9UPV0 1460 aa27.02■■□□□ 1.92
SNX2-213ENST00000514949 UBTFP17480 764 aaKnown RBP26.97■■□□□ 1.91
SNX2-213ENST00000514949 HMGXB3Q12766 1538 aa26.91■■□□□ 1.9
SNX2-213ENST00000514949 TOP2BQ02880 1626 aa26.9■■□□□ 1.9
SNX2-213ENST00000514949 NCAPD3P42695 1498 aa26.89■■□□□ 1.9
SNX2-213ENST00000514949 BIVM-ERCC5R4GMW8 1640 aa26.84■■□□□ 1.89
SNX2-213ENST00000514949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.83■■□□□ 1.88
SNX2-213ENST00000514949 CCER1Q8TC90 406 aaPredicted RBP26.81■■□□□ 1.88
SNX2-213ENST00000514949 CLIP1P30622 1438 aa26.76■■□□□ 1.87
SNX2-213ENST00000514949 RAPGEF2Q9Y4G8 1499 aa26.73■■□□□ 1.87
SNX2-213ENST00000514949 VPS8Q8N3P4 1428 aa26.7■■□□□ 1.87
SNX2-213ENST00000514949 ERICH3Q5RHP9 1530 aa26.66■■□□□ 1.86
SNX2-213ENST00000514949 CFTRP13569 1480 aa26.62■■□□□ 1.85
SNX2-213ENST00000514949 PRXQ9BXM0 1461 aa26.62■■□□□ 1.85
SNX2-213ENST00000514949 TTBK1Q5TCY1 1321 aaPredicted RBP26.59■■□□□ 1.85
SNX2-213ENST00000514949 CUX1P39880 1505 aa26.58■■□□□ 1.85
SNX2-213ENST00000514949 PRDM2Q13029 1718 aa26.47■■□□□ 1.83
SNX2-213ENST00000514949 KIF27Q86VH2 1401 aa26.47■■□□□ 1.83
SNX2-213ENST00000514949 APLP2Q06481 763 aa26.41■■□□□ 1.82
SNX2-213ENST00000514949 ARAP1Q96P48 1450 aa26.37■■□□□ 1.81
SNX2-213ENST00000514949 DIEXFQ68CQ4 756 aaKnown RBP26.29■■□□□ 1.8
SNX2-213ENST00000514949 CADPSQ9ULU8 1353 aa26.28■■□□□ 1.8
SNX2-213ENST00000514949 HNRNPUL2Q1KMD3 747 aaKnown RBP26.26■■□□□ 1.79
SNX2-213ENST00000514949 ZNF316A6NFI3 1004 aaPredicted RBP26.2■■□□□ 1.78
SNX2-213ENST00000514949 RANGAP1P46060 587 aaPredicted RBP26.18■■□□□ 1.78
SNX2-213ENST00000514949 SCAF1Q9H7N4 1312 aaKnown RBP26.17■■□□□ 1.78
SNX2-213ENST00000514949 IGF1RP08069 1367 aa26.17■■□□□ 1.78
SNX2-213ENST00000514949 ARHGAP35Q9NRY4 1499 aa26.17■■□□□ 1.78
SNX2-213ENST00000514949 CUX2O14529 1486 aa26.13■■□□□ 1.77
SNX2-213ENST00000514949 CLSPNQ9HAW4 1339 aa26.13■■□□□ 1.77
SNX2-213ENST00000514949 RRBP1Q9P2E9 1410 aaKnown RBP26.13■■□□□ 1.77
SNX2-213ENST00000514949 CC2D2AQ9P2K1 1620 aa26.1■■□□□ 1.77
SNX2-213ENST00000514949 FGD5Q6ZNL6 1462 aa26.09■■□□□ 1.77
SNX2-213ENST00000514949 KANK4Q5T7N3 995 aaPredicted RBP26.08■■□□□ 1.77
SNX2-213ENST00000514949 ACIN1Q9UKV3 1341 aaKnown RBP26.06■■□□□ 1.76
SNX2-213ENST00000514949 MAP3K1Q13233 1512 aa26.05■■□□□ 1.76
SNX2-213ENST00000514949 CARMIL1Q5VZK9 1371 aa26.03■■□□□ 1.76
SNX2-213ENST00000514949 FANCD2Q9BXW9 1451 aa25.98■■□□□ 1.75
SNX2-213ENST00000514949 DHX57Q6P158 1386 aaKnown RBP25.97■■□□□ 1.75
SNX2-213ENST00000514949 CENPBP07199 599 aaPredicted RBP25.94■■□□□ 1.74
SNX2-213ENST00000514949 NEUROD1Q13562 356 aa25.94■■□□□ 1.74
SNX2-213ENST00000514949 DNMBPQ6XZF7 1577 aa25.94■■□□□ 1.74
SNX2-213ENST00000514949 CCNB3Q8WWL7 1395 aa25.93■■□□□ 1.74
SNX2-213ENST00000514949 TIAM1Q13009 1591 aa25.9■■□□□ 1.74
SNX2-213ENST00000514949 ABCA10Q8WWZ4 1543 aa25.89■■□□□ 1.74
SNX2-213ENST00000514949 TOPBP1Q92547 1522 aa25.83■■□□□ 1.73
SNX2-213ENST00000514949 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.73
SNX2-213ENST00000514949 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
SNX2-213ENST00000514949 LRRC9Q6ZRR7 1453 aa25.79■■□□□ 1.72
SNX2-213ENST00000514949 CUL7Q14999 1698 aa25.77■■□□□ 1.72
SNX2-213ENST00000514949 CFAP43Q8NDM7 1665 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms