RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CHIC1Q5VXU3 224 aa29.95■■■□□ 2.39
NUP54-215ENST00000514313 AEBP2Q6ZN18 517 aaPredicted RBP29.86■■■□□ 2.37
NUP54-215ENST00000514313 PHF23Q9BUL5 403 aaPredicted RBP26.47■■□□□ 1.83
NUP54-215ENST00000514313 SENP3Q9H4L4 574 aaPredicted RBP25.1■■□□□ 1.61
NUP54-215ENST00000514313 PLPPR3Q6T4P5 718 aa24.67■■□□□ 1.54
NUP54-215ENST00000514313 FOXD1Q16676 465 aa23.24■■□□□ 1.31
NUP54-215ENST00000514313 ADRA2BP18089 450 aa23.16■■□□□ 1.3
NUP54-215ENST00000514313 PPP6R1Q9UPN7 881 aa23.07■■□□□ 1.28
NUP54-215ENST00000514313 KCNA4P22459 653 aa22.4■■□□□ 1.18
NUP54-215ENST00000514313 PIAS4Q8N2W9 510 aaPredicted RBP22.13■■□□□ 1.13
NUP54-215ENST00000514313 EHMT2Q96KQ7 1210 aa21.89■■□□□ 1.09
NUP54-215ENST00000514313 PPP4R3CPQ6ZMV5 832 aa21.88■■□□□ 1.09
NUP54-215ENST00000514313 NCBP3Q53F19 620 aaKnown RBP21.49■■□□□ 1.03
NUP54-215ENST00000514313 SLC4A1APQ9BWU0 796 aaKnown RBP21.45■■□□□ 1.02
NUP54-215ENST00000514313 NPM3O75607 178 aaKnown RBP21.27■■□□□ 1
NUP54-215ENST00000514313 CSRNP3Q8WYN3 585 aa21.22■□□□□ 0.99
NUP54-215ENST00000514313 CNKSR2Q8WXI2 1034 aa21.05■□□□□ 0.96
NUP54-215ENST00000514313 MSH5O43196 834 aa21.03■□□□□ 0.96
NUP54-215ENST00000514313 SCAF1Q9H7N4 1312 aaKnown RBP21.01■□□□□ 0.95
NUP54-215ENST00000514313 MAPK8IP2Q13387 824 aaPredicted RBP20.7■□□□□ 0.9
NUP54-215ENST00000514313 ZBTB22O15209 634 aa20.67■□□□□ 0.9
NUP54-215ENST00000514313 DNAJC5BQ9UF47 199 aa20.45■□□□□ 0.86
NUP54-215ENST00000514313 RNF216Q9NWF9 866 aaPredicted RBP20.43■□□□□ 0.86
NUP54-215ENST00000514313 FOXD4L1Q9NU39 408 aa20.33■□□□□ 0.85
NUP54-215ENST00000514313 DMRT2Q9Y5R5 561 aa20.2■□□□□ 0.82
NUP54-215ENST00000514313 HOXD11P31277 338 aaPredicted RBP20.12■□□□□ 0.81
NUP54-215ENST00000514313 SLC4A2P04920 1241 aa19.88■□□□□ 0.77
NUP54-215ENST00000514313 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
NUP54-215ENST00000514313 MYCNP04198 464 aaPredicted RBP19.6■□□□□ 0.73
NUP54-215ENST00000514313 ATXN8OSP0DMR3 200 aa19.49■□□□□ 0.71
NUP54-215ENST00000514313 DCAF8L1A6NGE4 600 aa19.29■□□□□ 0.68
NUP54-215ENST00000514313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.16■□□□□ 0.66
NUP54-215ENST00000514313 FKBP8Q14318 412 aa19.12■□□□□ 0.65
NUP54-215ENST00000514313 ATF5Q9Y2D1 282 aaPredicted RBP19.08■□□□□ 0.64
NUP54-215ENST00000514313 U3KPZ7 1027 aaPredicted RBP19.01■□□□□ 0.63
NUP54-215ENST00000514313 RTN4Q9NQC3 1192 aaKnown RBP18.97■□□□□ 0.63
NUP54-215ENST00000514313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
NUP54-215ENST00000514313 HNRNPUL2Q1KMD3 747 aaKnown RBP18.96■□□□□ 0.63
NUP54-215ENST00000514313 SAMD1Q6SPF0 538 aaPredicted RBP18.96■□□□□ 0.63
NUP54-215ENST00000514313 AMER1Q5JTC6 1135 aaPredicted RBP18.92■□□□□ 0.62
NUP54-215ENST00000514313 ZNF219Q9P2Y4 722 aaPredicted RBP18.6■□□□□ 0.57
NUP54-215ENST00000514313 APLP2Q06481 763 aa18.54■□□□□ 0.56
NUP54-215ENST00000514313 SLC24A1O60721 1099 aa18.52■□□□□ 0.56
NUP54-215ENST00000514313 MKRN4PQ13434 485 aaPredicted RBP18.28■□□□□ 0.52
NUP54-215ENST00000514313 SPDYE4A6NLX3 237 aa18.25■□□□□ 0.51
NUP54-215ENST00000514313 SPINK5Q9NQ38 1064 aaPredicted RBP18.23■□□□□ 0.51
NUP54-215ENST00000514313 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
NUP54-215ENST00000514313 RNF39Q9H2S5 420 aa18.14■□□□□ 0.49
NUP54-215ENST00000514313 FBLN2P98095 1184 aa18.12■□□□□ 0.49
NUP54-215ENST00000514313 FBXO3Q9UK99 471 aa18.12■□□□□ 0.49
NUP54-215ENST00000514313 POLA2Q14181 598 aa18.09■□□□□ 0.49
NUP54-215ENST00000514313 PROM2Q8N271 834 aa18.09■□□□□ 0.49
NUP54-215ENST00000514313 CAPN15O75808 1086 aa18.07■□□□□ 0.48
NUP54-215ENST00000514313 C1QBPQ07021 282 aaKnown RBP17.93■□□□□ 0.46
NUP54-215ENST00000514313 VASPP50552 380 aaPredicted RBP17.92■□□□□ 0.46
NUP54-215ENST00000514313 ABCB7O75027 752 aa17.85■□□□□ 0.45
NUP54-215ENST00000514313 ZBTB12Q9Y330 459 aaPredicted RBP17.81■□□□□ 0.44
NUP54-215ENST00000514313 IFNLR1Q8IU57 520 aaPredicted RBP17.76■□□□□ 0.43
NUP54-215ENST00000514313 DSG3P32926 999 aa17.57■□□□□ 0.4
NUP54-215ENST00000514313 PKD2Q13563 968 aa17.5■□□□□ 0.39
NUP54-215ENST00000514313 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
NUP54-215ENST00000514313 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
NUP54-215ENST00000514313 PLCB2Q00722 1185 aa17.48■□□□□ 0.39
NUP54-215ENST00000514313 DCAF8L2P0C7V8 631 aa17.46■□□□□ 0.39
NUP54-215ENST00000514313 SPDYE2BA6NHP3 402 aa17.43■□□□□ 0.38
NUP54-215ENST00000514313 SPDYE6P0CI01 402 aa17.43■□□□□ 0.38
NUP54-215ENST00000514313 SPDYE2Q495Y8 402 aa17.43■□□□□ 0.38
NUP54-215ENST00000514313 SSUH2Q9Y2M2 353 aa17.43■□□□□ 0.38
NUP54-215ENST00000514313 KLHL34Q8N239 644 aa17.37■□□□□ 0.37
NUP54-215ENST00000514313 SPOCK2Q92563 424 aa17.36■□□□□ 0.37
NUP54-215ENST00000514313 STAG3Q9UJ98 1225 aa17.36■□□□□ 0.37
NUP54-215ENST00000514313 PABPN1Q86U42 306 aaKnown RBP eCLIP17.33■□□□□ 0.36
NUP54-215ENST00000514313 CACNB1Q02641 598 aaPredicted RBP17.27■□□□□ 0.36
NUP54-215ENST00000514313 PLCD3Q8N3E9 789 aa17.26■□□□□ 0.35
NUP54-215ENST00000514313 HAP1P54257 671 aaPredicted RBP17.24■□□□□ 0.35
NUP54-215ENST00000514313 ECM2O94769 699 aaPredicted RBP17.21■□□□□ 0.35
NUP54-215ENST00000514313 MIER1Q8N108 512 aa17.17■□□□□ 0.34
NUP54-215ENST00000514313 RGL2O15211 777 aa17.05■□□□□ 0.32
NUP54-215ENST00000514313 NPM1P06748 294 aaKnown RBP eCLIP17.05■□□□□ 0.32
NUP54-215ENST00000514313 BBXQ8WY36 941 aaPredicted RBP17.03■□□□□ 0.32
NUP54-215ENST00000514313 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.99■□□□□ 0.31
NUP54-215ENST00000514313 PLEKHG5O94827 1062 aa16.98■□□□□ 0.31
NUP54-215ENST00000514313 ZBTB47Q9UFB7 747 aaPredicted RBP16.97■□□□□ 0.31
NUP54-215ENST00000514313 VSIG10Q8N0Z9 540 aa16.95■□□□□ 0.3
NUP54-215ENST00000514313 CIZ1Q9ULV3 898 aaPredicted RBP16.95■□□□□ 0.3
NUP54-215ENST00000514313 PAXIP1Q6ZW49 1069 aaPredicted RBP16.92■□□□□ 0.3
NUP54-215ENST00000514313 CFAP44Q96MT7 982 aa16.88■□□□□ 0.29
NUP54-215ENST00000514313 BCANQ96GW7 911 aa16.82■□□□□ 0.28
NUP54-215ENST00000514313 KDM2AQ9Y2K7 1162 aa16.79■□□□□ 0.28
NUP54-215ENST00000514313 CHGAP10645 457 aaKnown RBP16.78■□□□□ 0.28
NUP54-215ENST00000514313 TRIM41Q8WV44 630 aa16.77■□□□□ 0.28
NUP54-215ENST00000514313 SPRYD3Q8NCJ5 442 aa16.75■□□□□ 0.27
NUP54-215ENST00000514313 SPDYE1Q8NFV5 336 aaPredicted RBP16.7■□□□□ 0.26
NUP54-215ENST00000514313 NUBP1P53384 320 aa16.69■□□□□ 0.26
NUP54-215ENST00000514313 GSE1Q14687 1217 aa16.69■□□□□ 0.26
NUP54-215ENST00000514313 RNF25Q96BH1 459 aaPredicted RBP16.68■□□□□ 0.26
NUP54-215ENST00000514313 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
NUP54-215ENST00000514313 AKT1S1Q96B36 256 aa16.66■□□□□ 0.26
NUP54-215ENST00000514313 TSHZ2Q9NRE2 1034 aa16.66■□□□□ 0.26
NUP54-215ENST00000514313 HS6ST3Q8IZP7 471 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms