RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-222ENST00000495981 AEBP2Q6ZN18 517 aaPredicted RBP14.58□□□□□ -0.08
VPS52-222ENST00000495981 CHIC1Q5VXU3 224 aa14.24□□□□□ -0.13
VPS52-222ENST00000495981 PHF23Q9BUL5 403 aaPredicted RBP12.67□□□□□ -0.38
VPS52-222ENST00000495981 SENP3Q9H4L4 574 aaPredicted RBP12.41□□□□□ -0.42
VPS52-222ENST00000495981 PLPPR3Q6T4P5 718 aa11.75□□□□□ -0.53
VPS52-222ENST00000495981 FOXD1Q16676 465 aa11.52□□□□□ -0.57
VPS52-222ENST00000495981 ADRA2BP18089 450 aa11.12□□□□□ -0.63
VPS52-222ENST00000495981 PPP6R1Q9UPN7 881 aa11.02□□□□□ -0.65
VPS52-222ENST00000495981 KCNA4P22459 653 aa10.95□□□□□ -0.66
VPS52-222ENST00000495981 PIAS4Q8N2W9 510 aaPredicted RBP10.85□□□□□ -0.67
VPS52-222ENST00000495981 EHMT2Q96KQ7 1210 aa10.85□□□□□ -0.67
VPS52-222ENST00000495981 NISCHQ9Y2I1 1504 aa10.84□□□□□ -0.67
VPS52-222ENST00000495981 MSH5O43196 834 aa10.66□□□□□ -0.7
VPS52-222ENST00000495981 CSRNP3Q8WYN3 585 aa10.52□□□□□ -0.73
VPS52-222ENST00000495981 PPP4R3CPQ6ZMV5 832 aa10.47□□□□□ -0.73
VPS52-222ENST00000495981 SLC4A1APQ9BWU0 796 aaKnown RBP10.46□□□□□ -0.73
VPS52-222ENST00000495981 DNAJC5BQ9UF47 199 aa10.31□□□□□ -0.76
VPS52-222ENST00000495981 ABCC9O60706 1549 aa10.28□□□□□ -0.76
VPS52-222ENST00000495981 NCBP3Q53F19 620 aaKnown RBP10.26□□□□□ -0.77
VPS52-222ENST00000495981 NPM3O75607 178 aaKnown RBP10.25□□□□□ -0.77
VPS52-222ENST00000495981 ZBTB22O15209 634 aa10.16□□□□□ -0.78
VPS52-222ENST00000495981 SCAF1Q9H7N4 1312 aaKnown RBP10.1□□□□□ -0.79
VPS52-222ENST00000495981 MAPK8IP2Q13387 824 aaPredicted RBP10.01□□□□□ -0.81
VPS52-222ENST00000495981 CNKSR2Q8WXI2 1034 aa10.01□□□□□ -0.81
VPS52-222ENST00000495981 DMRT2Q9Y5R5 561 aa9.88□□□□□ -0.83
VPS52-222ENST00000495981 CCDC180Q9P1Z9 1646 aa9.87□□□□□ -0.83
VPS52-222ENST00000495981 POTEDQ86YR6 584 aa9.83□□□□□ -0.84
VPS52-222ENST00000495981 FOXD4L1Q9NU39 408 aa9.83□□□□□ -0.84
VPS52-222ENST00000495981 DNAJC5Q9H3Z4 198 aa9.69□□□□□ -0.86
VPS52-222ENST00000495981 RNF216Q9NWF9 866 aaPredicted RBP9.68□□□□□ -0.86
VPS52-222ENST00000495981 RTN4Q9NQC3 1192 aaKnown RBP9.66□□□□□ -0.86
VPS52-222ENST00000495981 HOXD11P31277 338 aaPredicted RBP9.65□□□□□ -0.86
VPS52-222ENST00000495981 SLC24A1O60721 1099 aa9.62□□□□□ -0.87
VPS52-222ENST00000495981 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS52-222ENST00000495981 SLC4A2P04920 1241 aa9.58□□□□□ -0.88
VPS52-222ENST00000495981 AMER1Q5JTC6 1135 aaPredicted RBP9.55□□□□□ -0.88
VPS52-222ENST00000495981 DCAF8L1A6NGE4 600 aa9.49□□□□□ -0.89
VPS52-222ENST00000495981 ATXN8OSP0DMR3 200 aa9.43□□□□□ -0.9
VPS52-222ENST00000495981 MYCNP04198 464 aaPredicted RBP9.39□□□□□ -0.91
VPS52-222ENST00000495981 FKBP8Q14318 412 aa9.39□□□□□ -0.91
VPS52-222ENST00000495981 RB1CC1Q8TDY2 1594 aa9.37□□□□□ -0.91
VPS52-222ENST00000495981 CECR2Q9BXF3 1484 aa9.28□□□□□ -0.92
VPS52-222ENST00000495981 BICRAQ9NZM4 1560 aa9.26□□□□□ -0.93
VPS52-222ENST00000495981 DCAF8L2P0C7V8 631 aa9.26□□□□□ -0.93
VPS52-222ENST00000495981 NACADO15069 1562 aa9.24□□□□□ -0.93
VPS52-222ENST00000495981 UNC13AQ9UPW8 1703 aa9.22□□□□□ -0.93
VPS52-222ENST00000495981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS52-222ENST00000495981 ATF5Q9Y2D1 282 aaPredicted RBP9.22□□□□□ -0.93
VPS52-222ENST00000495981 CC2D2AQ9P2K1 1620 aa9.16□□□□□ -0.94
VPS52-222ENST00000495981 MYO15BQ96JP2 1530 aa9.14□□□□□ -0.95
VPS52-222ENST00000495981 RNF39Q9H2S5 420 aa9.12□□□□□ -0.95
VPS52-222ENST00000495981 TRIM41Q8WV44 630 aa9.05□□□□□ -0.96
VPS52-222ENST00000495981 ZCCHC6Q5VYS8 1495 aaKnown RBP9.04□□□□□ -0.96
VPS52-222ENST00000495981 U3KPZ7 1027 aaPredicted RBP9.04□□□□□ -0.96
VPS52-222ENST00000495981 C1QBPQ07021 282 aaKnown RBP9.02□□□□□ -0.97
VPS52-222ENST00000495981 EIF4G1Q04637 1599 aaKnown RBP9.02□□□□□ -0.97
VPS52-222ENST00000495981 DCAF1Q9Y4B6 1507 aa9□□□□□ -0.97
VPS52-222ENST00000495981 SHROOM4Q9ULL8 1493 aa8.99□□□□□ -0.97
VPS52-222ENST00000495981 SAMD1Q6SPF0 538 aaPredicted RBP8.98□□□□□ -0.97
VPS52-222ENST00000495981 CACNB1Q02641 598 aaPredicted RBP8.95□□□□□ -0.98
VPS52-222ENST00000495981 CUX2O14529 1486 aa8.95□□□□□ -0.98
VPS52-222ENST00000495981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.94□□□□□ -0.98
VPS52-222ENST00000495981 HNRNPUL2Q1KMD3 747 aaKnown RBP8.94□□□□□ -0.98
VPS52-222ENST00000495981 SCRIBQ14160 1630 aa8.91□□□□□ -0.98
VPS52-222ENST00000495981 ZNF219Q9P2Y4 722 aaPredicted RBP8.9□□□□□ -0.98
VPS52-222ENST00000495981 PROM2Q8N271 834 aa8.87□□□□□ -0.99
VPS52-222ENST00000495981 APLP2Q06481 763 aa8.85□□□□□ -0.99
VPS52-222ENST00000495981 MKRN4PQ13434 485 aaPredicted RBP8.85□□□□□ -0.99
VPS52-222ENST00000495981 PLCB2Q00722 1185 aa8.84□□□□□ -0.99
VPS52-222ENST00000495981 SPDYE4A6NLX3 237 aa8.81□□□□□ -1
VPS52-222ENST00000495981 SPINK5Q9NQ38 1064 aaPredicted RBP8.81□□□□□ -1
VPS52-222ENST00000495981 FBXO3Q9UK99 471 aa8.81□□□□□ -1
VPS52-222ENST00000495981 ERCC6Q03468 1493 aa8.81□□□□□ -1
VPS52-222ENST00000495981 CAPN15O75808 1086 aa8.8□□□□□ -1
VPS52-222ENST00000495981 VASPP50552 380 aaPredicted RBP8.78□□□□□ -1
VPS52-222ENST00000495981 IFNLR1Q8IU57 520 aaPredicted RBP8.75□□□□□ -1.01
VPS52-222ENST00000495981 TRHP20396 242 aaPredicted RBP8.74□□□□□ -1.01
VPS52-222ENST00000495981 NESP48681 1621 aa8.72□□□□□ -1.01
VPS52-222ENST00000495981 PKD2Q13563 968 aa8.71□□□□□ -1.02
VPS52-222ENST00000495981 HAP1P54257 671 aaPredicted RBP8.66□□□□□ -1.02
VPS52-222ENST00000495981 DSG3P32926 999 aa8.65□□□□□ -1.02
VPS52-222ENST00000495981 NCAPD3P42695 1498 aa8.62□□□□□ -1.03
VPS52-222ENST00000495981 ABCB7O75027 752 aa8.61□□□□□ -1.03
VPS52-222ENST00000495981 PRKCSHP14314 528 aaPredicted RBP8.61□□□□□ -1.03
VPS52-222ENST00000495981 FBLN2P98095 1184 aa8.6□□□□□ -1.03
VPS52-222ENST00000495981 THOC2Q8NI27 1593 aaKnown RBP8.59□□□□□ -1.03
VPS52-222ENST00000495981 POLA2Q14181 598 aa8.58□□□□□ -1.04
VPS52-222ENST00000495981 VSIG10Q8N0Z9 540 aa8.57□□□□□ -1.04
VPS52-222ENST00000495981 BCANQ96GW7 911 aa8.57□□□□□ -1.04
VPS52-222ENST00000495981 OSCARQ8IYS5 282 aa8.55□□□□□ -1.04
VPS52-222ENST00000495981 ATAD2BQ9ULI0 1458 aa8.54□□□□□ -1.04
VPS52-222ENST00000495981 TAOK2Q9UL54 1235 aa8.54□□□□□ -1.04
VPS52-222ENST00000495981 KDM2AQ9Y2K7 1162 aa8.54□□□□□ -1.04
VPS52-222ENST00000495981 NPM1P06748 294 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS52-222ENST00000495981 SMARCA4P51532 1647 aa8.52□□□□□ -1.05
VPS52-222ENST00000495981 HMGXB3Q12766 1538 aa8.52□□□□□ -1.05
VPS52-222ENST00000495981 SMARCA2P51531 1590 aa8.52□□□□□ -1.05
VPS52-222ENST00000495981 BBXQ8WY36 941 aaPredicted RBP8.48□□□□□ -1.05
VPS52-222ENST00000495981 PEG3Q9GZU2 1588 aa8.47□□□□□ -1.05
VPS52-222ENST00000495981 SPOCK2Q92563 424 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms