RNA–Protein interactions for RNA: ENST00000492386.5

SEMA4D-220, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,396 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-220ENST00000492386 NISCHQ9Y2I1 1504 aa33.59■■■□□ 2.97
SEMA4D-220ENST00000492386 CCDC180Q9P1Z9 1646 aa28.63■■■□□ 2.17
SEMA4D-220ENST00000492386 SHROOM4Q9ULL8 1493 aa28.49■■■□□ 2.15
SEMA4D-220ENST00000492386 ZCCHC6Q5VYS8 1495 aaKnown RBP28.44■■■□□ 2.14
SEMA4D-220ENST00000492386 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
SEMA4D-220ENST00000492386 DCAF1Q9Y4B6 1507 aa27.63■■■□□ 2.01
SEMA4D-220ENST00000492386 DCAF8L2P0C7V8 631 aa27.6■■■□□ 2.01
SEMA4D-220ENST00000492386 CHIC1Q5VXU3 224 aa27.28■■□□□ 1.96
SEMA4D-220ENST00000492386 MYO15BQ96JP2 1530 aa27.22■■□□□ 1.95
SEMA4D-220ENST00000492386 ABCC9O60706 1549 aa26.86■■□□□ 1.89
SEMA4D-220ENST00000492386 SCRIBQ14160 1630 aa26.72■■□□□ 1.87
SEMA4D-220ENST00000492386 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
SEMA4D-220ENST00000492386 HRCP23327 699 aa26.49■■□□□ 1.83
SEMA4D-220ENST00000492386 LOC105371045A0A1W2PR82 267 aa26.41■■□□□ 1.82
SEMA4D-220ENST00000492386 NACADO15069 1562 aa26.4■■□□□ 1.82
SEMA4D-220ENST00000492386 PCGF6Q9BYE7 350 aa26.4■■□□□ 1.82
SEMA4D-220ENST00000492386 RB1CC1Q8TDY2 1594 aa26.32■■□□□ 1.8
SEMA4D-220ENST00000492386 CECR2Q9BXF3 1484 aa26.15■■□□□ 1.78
SEMA4D-220ENST00000492386 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
SEMA4D-220ENST00000492386 TRIM41Q8WV44 630 aa26.06■■□□□ 1.76
SEMA4D-220ENST00000492386 WIZO95785 1651 aa25.97■■□□□ 1.75
SEMA4D-220ENST00000492386 TRIM26Q12899 539 aaPredicted RBP25.95■■□□□ 1.74
SEMA4D-220ENST00000492386 PPARGC1BQ86YN6 1023 aaKnown RBP25.87■■□□□ 1.73
SEMA4D-220ENST00000492386 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
SEMA4D-220ENST00000492386 FAM9AQ8IZU1 332 aaPredicted RBP25.79■■□□□ 1.72
SEMA4D-220ENST00000492386 EIF4G1Q04637 1599 aaKnown RBP25.72■■□□□ 1.71
SEMA4D-220ENST00000492386 UNC13AQ9UPW8 1703 aa25.64■■□□□ 1.69
SEMA4D-220ENST00000492386 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
SEMA4D-220ENST00000492386 TOP2AP11388 1531 aaKnown RBP25.59■■□□□ 1.69
SEMA4D-220ENST00000492386 EHMT2Q96KQ7 1210 aa25.51■■□□□ 1.67
SEMA4D-220ENST00000492386 SMARCA2P51531 1590 aa25.45■■□□□ 1.66
SEMA4D-220ENST00000492386 CCDC88BA6NC98 1476 aa25.43■■□□□ 1.66
SEMA4D-220ENST00000492386 ZEB1P37275 1124 aaPredicted RBP25.4■■□□□ 1.66
SEMA4D-220ENST00000492386 ABCC8Q09428 1581 aa25.37■■□□□ 1.65
SEMA4D-220ENST00000492386 BICRAQ9NZM4 1560 aa25.27■■□□□ 1.64
SEMA4D-220ENST00000492386 PEG3Q9GZU2 1588 aa25.14■■□□□ 1.62
SEMA4D-220ENST00000492386 SOGA1O94964 1423 aa25.12■■□□□ 1.61
SEMA4D-220ENST00000492386 PABPN1Q86U42 306 aaKnown RBP eCLIP25.11■■□□□ 1.61
SEMA4D-220ENST00000492386 WRNQ14191 1432 aaPredicted RBP eCLIP25.07■■□□□ 1.6
SEMA4D-220ENST00000492386 EEA1Q15075 1411 aa25.05■■□□□ 1.6
SEMA4D-220ENST00000492386 CEP162Q5TB80 1403 aa25.03■■□□□ 1.6
SEMA4D-220ENST00000492386 TNIKQ9UKE5 1360 aa25.01■■□□□ 1.59
SEMA4D-220ENST00000492386 RUSC2Q8N2Y8 1516 aa25■■□□□ 1.59
SEMA4D-220ENST00000492386 CSRNP3Q8WYN3 585 aa24.96■■□□□ 1.59
SEMA4D-220ENST00000492386 ATAD2BQ9ULI0 1458 aa24.89■■□□□ 1.57
SEMA4D-220ENST00000492386 GOLGA3Q08378 1498 aa24.86■■□□□ 1.57
SEMA4D-220ENST00000492386 SYNJ1O43426 1573 aa24.86■■□□□ 1.57
SEMA4D-220ENST00000492386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.85■■□□□ 1.57
SEMA4D-220ENST00000492386 BAZ1BQ9UIG0 1483 aaKnown RBP24.8■■□□□ 1.56
SEMA4D-220ENST00000492386 UBTFP17480 764 aaKnown RBP24.8■■□□□ 1.56
SEMA4D-220ENST00000492386 CCER1Q8TC90 406 aaPredicted RBP24.79■■□□□ 1.56
SEMA4D-220ENST00000492386 KIF21BO75037 1637 aa24.75■■□□□ 1.55
SEMA4D-220ENST00000492386 CEP164Q9UPV0 1460 aa24.72■■□□□ 1.55
SEMA4D-220ENST00000492386 TTBK1Q5TCY1 1321 aaPredicted RBP24.72■■□□□ 1.55
SEMA4D-220ENST00000492386 TOP2BQ02880 1626 aa24.57■■□□□ 1.52
SEMA4D-220ENST00000492386 CLIP1P30622 1438 aa24.55■■□□□ 1.52
SEMA4D-220ENST00000492386 RAPGEF2Q9Y4G8 1499 aa24.52■■□□□ 1.52
SEMA4D-220ENST00000492386 BIVM-ERCC5R4GMW8 1640 aa24.51■■□□□ 1.51
SEMA4D-220ENST00000492386 VPS8Q8N3P4 1428 aa24.48■■□□□ 1.51
SEMA4D-220ENST00000492386 HMGXB3Q12766 1538 aa24.45■■□□□ 1.5
SEMA4D-220ENST00000492386 NCAPD3P42695 1498 aa24.41■■□□□ 1.5
SEMA4D-220ENST00000492386 SCAF1Q9H7N4 1312 aaKnown RBP24.4■■□□□ 1.5
SEMA4D-220ENST00000492386 ERICH3Q5RHP9 1530 aa24.34■■□□□ 1.49
SEMA4D-220ENST00000492386 DIEXFQ68CQ4 756 aaKnown RBP24.34■■□□□ 1.49
SEMA4D-220ENST00000492386 PRXQ9BXM0 1461 aa24.32■■□□□ 1.48
SEMA4D-220ENST00000492386 CUX1P39880 1505 aa24.3■■□□□ 1.48
SEMA4D-220ENST00000492386 HNRNPUL2Q1KMD3 747 aaKnown RBP24.26■■□□□ 1.47
SEMA4D-220ENST00000492386 APLP2Q06481 763 aa24.25■■□□□ 1.47
SEMA4D-220ENST00000492386 CFTRP13569 1480 aa24.23■■□□□ 1.47
SEMA4D-220ENST00000492386 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
SEMA4D-220ENST00000492386 ARAP1Q96P48 1450 aa24.2■■□□□ 1.46
SEMA4D-220ENST00000492386 ACIN1Q9UKV3 1341 aaKnown RBP24.18■■□□□ 1.46
SEMA4D-220ENST00000492386 ZNF316A6NFI3 1004 aaPredicted RBP24.18■■□□□ 1.46
SEMA4D-220ENST00000492386 KIF27Q86VH2 1401 aa24.16■■□□□ 1.46
SEMA4D-220ENST00000492386 PRDM2Q13029 1718 aa24.14■■□□□ 1.45
SEMA4D-220ENST00000492386 NEUROD1Q13562 356 aa24.13■■□□□ 1.45
SEMA4D-220ENST00000492386 CENPBP07199 599 aaPredicted RBP24.01■■□□□ 1.43
SEMA4D-220ENST00000492386 KANK4Q5T7N3 995 aaPredicted RBP24■■□□□ 1.43
SEMA4D-220ENST00000492386 ARHGAP35Q9NRY4 1499 aa23.98■■□□□ 1.43
SEMA4D-220ENST00000492386 RRBP1Q9P2E9 1410 aaKnown RBP23.94■■□□□ 1.42
SEMA4D-220ENST00000492386 PELP1Q8IZL8 1130 aaKnown RBP23.92■■□□□ 1.42
SEMA4D-220ENST00000492386 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
SEMA4D-220ENST00000492386 CUX2O14529 1486 aa23.91■■□□□ 1.42
SEMA4D-220ENST00000492386 DHX57Q6P158 1386 aaKnown RBP23.9■■□□□ 1.42
SEMA4D-220ENST00000492386 CLSPNQ9HAW4 1339 aa23.9■■□□□ 1.42
SEMA4D-220ENST00000492386 IGF1RP08069 1367 aa23.89■■□□□ 1.42
SEMA4D-220ENST00000492386 GTF3C3Q9Y5Q9 886 aa23.86■■□□□ 1.41
SEMA4D-220ENST00000492386 FGD5Q6ZNL6 1462 aa23.84■■□□□ 1.41
SEMA4D-220ENST00000492386 MIER1Q8N108 512 aa23.83■■□□□ 1.4
SEMA4D-220ENST00000492386 CCNB3Q8WWL7 1395 aa23.78■■□□□ 1.4
SEMA4D-220ENST00000492386 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.4
SEMA4D-220ENST00000492386 CC2D2AQ9P2K1 1620 aa23.76■■□□□ 1.39
SEMA4D-220ENST00000492386 MAP3K1Q13233 1512 aa23.75■■□□□ 1.39
SEMA4D-220ENST00000492386 TIAM1Q13009 1591 aa23.75■■□□□ 1.39
SEMA4D-220ENST00000492386 YTHDC1Q96MU7 727 aaKnown RBP23.7■■□□□ 1.38
SEMA4D-220ENST00000492386 FANCD2Q9BXW9 1451 aa23.69■■□□□ 1.38
SEMA4D-220ENST00000492386 DNMBPQ6XZF7 1577 aa23.63■■□□□ 1.37
SEMA4D-220ENST00000492386 LRRC9Q6ZRR7 1453 aa23.63■■□□□ 1.37
SEMA4D-220ENST00000492386 CFAP43Q8NDM7 1665 aa23.61■■□□□ 1.37
SEMA4D-220ENST00000492386 ABCA10Q8WWZ4 1543 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms