RNA–Protein interactions for RNA: ENST00000488317.1

SRRM1-215, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 2

Gene SRRM1, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-215ENST00000488317 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
SRRM1-215ENST00000488317 AEBP2Q6ZN18 517 aaPredicted RBP19.37■□□□□ 0.69
SRRM1-215ENST00000488317 PHF23Q9BUL5 403 aaPredicted RBP17.13■□□□□ 0.33
SRRM1-215ENST00000488317 SENP3Q9H4L4 574 aaPredicted RBP16.39■□□□□ 0.21
SRRM1-215ENST00000488317 PLPPR3Q6T4P5 718 aa16.03■□□□□ 0.16
SRRM1-215ENST00000488317 FOXD1Q16676 465 aa15.14■□□□□ 0.01
SRRM1-215ENST00000488317 ADRA2BP18089 450 aa15.02■□□□□ -0
SRRM1-215ENST00000488317 PPP6R1Q9UPN7 881 aa14.96□□□□□ -0.01
SRRM1-215ENST00000488317 PIAS4Q8N2W9 510 aaPredicted RBP14.45□□□□□ -0.1
SRRM1-215ENST00000488317 KCNA4P22459 653 aa14.43□□□□□ -0.1
SRRM1-215ENST00000488317 PPP4R3CPQ6ZMV5 832 aa14.2□□□□□ -0.14
SRRM1-215ENST00000488317 EHMT2Q96KQ7 1210 aa14.08□□□□□ -0.16
SRRM1-215ENST00000488317 NCBP3Q53F19 620 aaKnown RBP14□□□□□ -0.17
SRRM1-215ENST00000488317 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
SRRM1-215ENST00000488317 MSH5O43196 834 aa13.78□□□□□ -0.2
SRRM1-215ENST00000488317 SCAF1Q9H7N4 1312 aaKnown RBP13.76□□□□□ -0.21
SRRM1-215ENST00000488317 NPM3O75607 178 aaKnown RBP13.74□□□□□ -0.21
SRRM1-215ENST00000488317 CNKSR2Q8WXI2 1034 aa13.68□□□□□ -0.22
SRRM1-215ENST00000488317 CSRNP3Q8WYN3 585 aa13.61□□□□□ -0.23
SRRM1-215ENST00000488317 MAPK8IP2Q13387 824 aaPredicted RBP13.47□□□□□ -0.25
SRRM1-215ENST00000488317 RNF216Q9NWF9 866 aaPredicted RBP13.26□□□□□ -0.29
SRRM1-215ENST00000488317 ZBTB22O15209 634 aa13.25□□□□□ -0.29
SRRM1-215ENST00000488317 DNAJC5BQ9UF47 199 aa13.16□□□□□ -0.3
SRRM1-215ENST00000488317 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
SRRM1-215ENST00000488317 FOXD4L1Q9NU39 408 aa13.14□□□□□ -0.31
SRRM1-215ENST00000488317 HOXD11P31277 338 aaPredicted RBP13.05□□□□□ -0.32
SRRM1-215ENST00000488317 SLC4A2P04920 1241 aa12.83□□□□□ -0.36
SRRM1-215ENST00000488317 MYCNP04198 464 aaPredicted RBP12.7□□□□□ -0.38
SRRM1-215ENST00000488317 DCAF8L1A6NGE4 600 aa12.68□□□□□ -0.38
SRRM1-215ENST00000488317 ATXN8OSP0DMR3 200 aa12.61□□□□□ -0.39
SRRM1-215ENST00000488317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.55□□□□□ -0.41e-7■■■□□ 15.3
SRRM1-215ENST00000488317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
SRRM1-215ENST00000488317 HNRNPUL2Q1KMD3 747 aaKnown RBP12.38□□□□□ -0.43
SRRM1-215ENST00000488317 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
SRRM1-215ENST00000488317 FKBP8Q14318 412 aa12.33□□□□□ -0.44
SRRM1-215ENST00000488317 U3KPZ7 1027 aaPredicted RBP12.32□□□□□ -0.44
SRRM1-215ENST00000488317 ATF5Q9Y2D1 282 aaPredicted RBP12.31□□□□□ -0.44
SRRM1-215ENST00000488317 APLP2Q06481 763 aa12.15□□□□□ -0.46
SRRM1-215ENST00000488317 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
SRRM1-215ENST00000488317 ZNF219Q9P2Y4 722 aaPredicted RBP12.09□□□□□ -0.47
SRRM1-215ENST00000488317 RTN4Q9NQC3 1192 aaKnown RBP12.08□□□□□ -0.48
SRRM1-215ENST00000488317 TRHP20396 242 aaPredicted RBP11.9□□□□□ -0.5
SRRM1-215ENST00000488317 SPINK5Q9NQ38 1064 aaPredicted RBP11.85□□□□□ -0.51
SRRM1-215ENST00000488317 CAPN15O75808 1086 aa11.84□□□□□ -0.51
SRRM1-215ENST00000488317 RNF39Q9H2S5 420 aa11.83□□□□□ -0.52
SRRM1-215ENST00000488317 SPDYE4A6NLX3 237 aa11.82□□□□□ -0.52
SRRM1-215ENST00000488317 FBLN2P98095 1184 aa11.82□□□□□ -0.52
SRRM1-215ENST00000488317 POLA2Q14181 598 aa11.8□□□□□ -0.52
SRRM1-215ENST00000488317 MKRN4PQ13434 485 aaPredicted RBP11.79□□□□□ -0.52
SRRM1-215ENST00000488317 SLC24A1O60721 1099 aa11.76□□□□□ -0.53
SRRM1-215ENST00000488317 FBXO3Q9UK99 471 aa11.75□□□□□ -0.53
SRRM1-215ENST00000488317 C1QBPQ07021 282 aaKnown RBP11.74□□□□□ -0.53
SRRM1-215ENST00000488317 POTEDQ86YR6 584 aa11.69□□□□□ -0.54
SRRM1-215ENST00000488317 ABCB7O75027 752 aa11.65□□□□□ -0.54
SRRM1-215ENST00000488317 ZBTB12Q9Y330 459 aaPredicted RBP11.62□□□□□ -0.55
SRRM1-215ENST00000488317 PROM2Q8N271 834 aa11.59□□□□□ -0.55
SRRM1-215ENST00000488317 VASPP50552 380 aaPredicted RBP11.55□□□□□ -0.56
SRRM1-215ENST00000488317 DSG3P32926 999 aa11.44□□□□□ -0.58
SRRM1-215ENST00000488317 IFNLR1Q8IU57 520 aaPredicted RBP11.42□□□□□ -0.58
SRRM1-215ENST00000488317 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
SRRM1-215ENST00000488317 OSCARQ8IYS5 282 aa11.36□□□□□ -0.59
SRRM1-215ENST00000488317 SPDYE2BA6NHP3 402 aa11.34□□□□□ -0.59
SRRM1-215ENST00000488317 SPDYE6P0CI01 402 aa11.34□□□□□ -0.59
SRRM1-215ENST00000488317 SPDYE2Q495Y8 402 aa11.34□□□□□ -0.59
SRRM1-215ENST00000488317 KLHL34Q8N239 644 aa11.33□□□□□ -0.6
SRRM1-215ENST00000488317 DCAF8L2P0C7V8 631 aa11.32□□□□□ -0.6
SRRM1-215ENST00000488317 STAG3Q9UJ98 1225 aa11.29□□□□□ -0.6
SRRM1-215ENST00000488317 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
SRRM1-215ENST00000488317 SSUH2Q9Y2M2 353 aa11.26□□□□□ -0.61
SRRM1-215ENST00000488317 PLCD3Q8N3E9 789 aa11.25□□□□□ -0.61
SRRM1-215ENST00000488317 SPOCK2Q92563 424 aa11.24□□□□□ -0.61
SRRM1-215ENST00000488317 CACNB1Q02641 598 aaPredicted RBP11.23□□□□□ -0.61
SRRM1-215ENST00000488317 PKD2Q13563 968 aa11.22□□□□□ -0.61
SRRM1-215ENST00000488317 MIER1Q8N108 512 aa11.21□□□□□ -0.61
SRRM1-215ENST00000488317 PLCB2Q00722 1185 aa11.17□□□□□ -0.62
SRRM1-215ENST00000488317 ECM2O94769 699 aaPredicted RBP11.13□□□□□ -0.63
SRRM1-215ENST00000488317 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
SRRM1-215ENST00000488317 HAP1P54257 671 aaPredicted RBP11.08□□□□□ -0.64
SRRM1-215ENST00000488317 ZBTB47Q9UFB7 747 aaPredicted RBP11.05□□□□□ -0.64
SRRM1-215ENST00000488317 CIZ1Q9ULV3 898 aaPredicted RBP11.03□□□□□ -0.64
SRRM1-215ENST00000488317 ZBTB4Q9P1Z0 1013 aaPredicted RBP11□□□□□ -0.65
SRRM1-215ENST00000488317 RGL2O15211 777 aa10.96□□□□□ -0.65
SRRM1-215ENST00000488317 BBXQ8WY36 941 aaPredicted RBP10.96□□□□□ -0.65
SRRM1-215ENST00000488317 NPM1P06748 294 aaKnown RBP eCLIP10.92□□□□□ -0.66
SRRM1-215ENST00000488317 RBM42Q9BTD8 480 aaKnown RBP10.92□□□□□ -0.66
SRRM1-215ENST00000488317 SPDYE1Q8NFV5 336 aaPredicted RBP10.91□□□□□ -0.66
SRRM1-215ENST00000488317 PAXIP1Q6ZW49 1069 aaPredicted RBP10.9□□□□□ -0.66
SRRM1-215ENST00000488317 CFAP44Q96MT7 982 aa10.89□□□□□ -0.67
SRRM1-215ENST00000488317 AKT1S1Q96B36 256 aa10.88□□□□□ -0.67
SRRM1-215ENST00000488317 CLEC11AQ9Y240 323 aa10.88□□□□□ -0.67
SRRM1-215ENST00000488317 TRIM41Q8WV44 630 aa10.87□□□□□ -0.67
SRRM1-215ENST00000488317 VSIG10Q8N0Z9 540 aa10.86□□□□□ -0.67
SRRM1-215ENST00000488317 CHGAP10645 457 aaKnown RBP10.85□□□□□ -0.67
SRRM1-215ENST00000488317 GSE1Q14687 1217 aa10.85□□□□□ -0.67
SRRM1-215ENST00000488317 PRR29P0C7W0 189 aa10.83□□□□□ -0.68
SRRM1-215ENST00000488317 DCAF8Q5TAQ9 597 aa10.82□□□□□ -0.68
SRRM1-215ENST00000488317 SPRYD3Q8NCJ5 442 aa10.81□□□□□ -0.68
SRRM1-215ENST00000488317 NUBP1P53384 320 aa10.78□□□□□ -0.68
SRRM1-215ENST00000488317 REM2Q8IYK8 340 aaPredicted RBP10.78□□□□□ -0.68
SRRM1-215ENST00000488317 BCANQ96GW7 911 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms