RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 AEBP2Q6ZN18 517 aaPredicted RBP25.51■■□□□ 1.68
LSM5-210ENST00000480956 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
LSM5-210ENST00000480956 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
LSM5-210ENST00000480956 SENP3Q9H4L4 574 aaPredicted RBP21.39■■□□□ 1.01
LSM5-210ENST00000480956 FOXD1Q16676 465 aa20.02■□□□□ 0.79
LSM5-210ENST00000480956 PLPPR3Q6T4P5 718 aa20■□□□□ 0.79
LSM5-210ENST00000480956 PPP6R1Q9UPN7 881 aa19.36■□□□□ 0.69
LSM5-210ENST00000480956 ADRA2BP18089 450 aa19.26■□□□□ 0.67
LSM5-210ENST00000480956 PIAS4Q8N2W9 510 aaPredicted RBP18.76■□□□□ 0.59
LSM5-210ENST00000480956 EHMT2Q96KQ7 1210 aa18.42■□□□□ 0.54
LSM5-210ENST00000480956 SLC24A1O60721 1099 aa18.29■□□□□ 0.52
LSM5-210ENST00000480956 MSH5O43196 834 aa18.26■□□□□ 0.51
LSM5-210ENST00000480956 PPP4R3CPQ6ZMV5 832 aa17.69■□□□□ 0.42
LSM5-210ENST00000480956 KCNA4P22459 653 aa17.52■□□□□ 0.4
LSM5-210ENST00000480956 MAPK8IP2Q13387 824 aaPredicted RBP17.52■□□□□ 0.4
LSM5-210ENST00000480956 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
LSM5-210ENST00000480956 SCAF1Q9H7N4 1312 aaKnown RBP17.34■□□□□ 0.37
LSM5-210ENST00000480956 DMRT2Q9Y5R5 561 aa17.16■□□□□ 0.34
LSM5-210ENST00000480956 RTN4Q9NQC3 1192 aaKnown RBP17.15■□□□□ 0.34
LSM5-210ENST00000480956 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
LSM5-210ENST00000480956 AMER1Q5JTC6 1135 aaPredicted RBP17.11■□□□□ 0.33
LSM5-210ENST00000480956 NCBP3Q53F19 620 aaKnown RBP17.05■□□□□ 0.32
LSM5-210ENST00000480956 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
LSM5-210ENST00000480956 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
LSM5-210ENST00000480956 RNF216Q9NWF9 866 aaPredicted RBP16.83■□□□□ 0.28
LSM5-210ENST00000480956 HOXD11P31277 338 aaPredicted RBP16.82■□□□□ 0.28
LSM5-210ENST00000480956 POTEDQ86YR6 584 aa16.8■□□□□ 0.28
LSM5-210ENST00000480956 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
LSM5-210ENST00000480956 DCAF8L1A6NGE4 600 aa16.29■□□□□ 0.2
LSM5-210ENST00000480956 SLC4A2P04920 1241 aa16.16■□□□□ 0.18
LSM5-210ENST00000480956 ZBTB22O15209 634 aa16.14■□□□□ 0.17
LSM5-210ENST00000480956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.9■□□□□ 0.143e-13■■■□□ 16
LSM5-210ENST00000480956 DAXXQ9UER7 740 aaPredicted RBP15.9■□□□□ 0.14
LSM5-210ENST00000480956 PRKCSHP14314 528 aaPredicted RBP15.88■□□□□ 0.13
LSM5-210ENST00000480956 FOXD4L1Q9NU39 408 aa15.86■□□□□ 0.13
LSM5-210ENST00000480956 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
LSM5-210ENST00000480956 RNF39Q9H2S5 420 aa15.78■□□□□ 0.12
LSM5-210ENST00000480956 BCANQ96GW7 911 aa15.76■□□□□ 0.11
LSM5-210ENST00000480956 TAOK2Q9UL54 1235 aa15.7■□□□□ 0.1
LSM5-210ENST00000480956 PLCB2Q00722 1185 aa15.67■□□□□ 0.1
LSM5-210ENST00000480956 FKBP8Q14318 412 aa15.65■□□□□ 0.1
LSM5-210ENST00000480956 MYCNP04198 464 aaPredicted RBP15.61■□□□□ 0.09
LSM5-210ENST00000480956 HAP1P54257 671 aaPredicted RBP15.49■□□□□ 0.07
LSM5-210ENST00000480956 C1QBPQ07021 282 aaKnown RBP15.49■□□□□ 0.07
LSM5-210ENST00000480956 ARXQ96QS3 562 aa15.48■□□□□ 0.07
LSM5-210ENST00000480956 TPRNQ4KMQ1 711 aa15.43■□□□□ 0.06
LSM5-210ENST00000480956 ATF5Q9Y2D1 282 aaPredicted RBP15.43■□□□□ 0.06
LSM5-210ENST00000480956 SPINK5Q9NQ38 1064 aaPredicted RBP15.39■□□□□ 0.05
LSM5-210ENST00000480956 SAMD1Q6SPF0 538 aaPredicted RBP15.35■□□□□ 0.05
LSM5-210ENST00000480956 TIMELESSQ9UNS1 1208 aa15.35■□□□□ 0.05
LSM5-210ENST00000480956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.34■□□□□ 0.05
LSM5-210ENST00000480956 HNRNPUL2Q1KMD3 747 aaKnown RBP15.34■□□□□ 0.05
LSM5-210ENST00000480956 ATXN8OSP0DMR3 200 aa15.26■□□□□ 0.03
LSM5-210ENST00000480956 CACNB1Q02641 598 aaPredicted RBP15.26■□□□□ 0.03
LSM5-210ENST00000480956 VSIG10Q8N0Z9 540 aa15.26■□□□□ 0.03
LSM5-210ENST00000480956 TULP1O00294 542 aaPredicted RBP15.23■□□□□ 0.03
LSM5-210ENST00000480956 CAPN15O75808 1086 aa15.16■□□□□ 0.02
LSM5-210ENST00000480956 TRHP20396 242 aaPredicted RBP15.12■□□□□ 0.01
LSM5-210ENST00000480956 APLP2Q06481 763 aa15.1■□□□□ 0.01
LSM5-210ENST00000480956 HOMEZQ8IX15 550 aa15.06■□□□□ 0
LSM5-210ENST00000480956 ERICH6Q7L0X2 663 aa15.04■□□□□ -0
LSM5-210ENST00000480956 ZNF219Q9P2Y4 722 aaPredicted RBP15.04■□□□□ -0
LSM5-210ENST00000480956 DSG3P32926 999 aa15.03■□□□□ -0
LSM5-210ENST00000480956 GTF3C3Q9Y5Q9 886 aa15□□□□□ -0.01
LSM5-210ENST00000480956 ABCB7O75027 752 aa14.96□□□□□ -0.01
LSM5-210ENST00000480956 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
LSM5-210ENST00000480956 POLA2Q14181 598 aa14.92□□□□□ -0.02
LSM5-210ENST00000480956 KDM2AQ9Y2K7 1162 aa14.87□□□□□ -0.03
LSM5-210ENST00000480956 RANGAP1P46060 587 aaPredicted RBP14.78□□□□□ -0.04
LSM5-210ENST00000480956 FBLN2P98095 1184 aa14.75□□□□□ -0.05
LSM5-210ENST00000480956 MKRN4PQ13434 485 aaPredicted RBP14.73□□□□□ -0.05
LSM5-210ENST00000480956 TMEM132AQ24JP5 1023 aa14.67□□□□□ -0.06
LSM5-210ENST00000480956 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.65□□□□□ -0.06
LSM5-210ENST00000480956 FBXO3Q9UK99 471 aa14.62□□□□□ -0.07
LSM5-210ENST00000480956 C14orf37Q86TY3 774 aa14.6□□□□□ -0.07
LSM5-210ENST00000480956 PAXIP1Q6ZW49 1069 aaPredicted RBP14.55□□□□□ -0.08
LSM5-210ENST00000480956 BBXQ8WY36 941 aaPredicted RBP14.55□□□□□ -0.08
LSM5-210ENST00000480956 CFAP44Q96MT7 982 aa14.51□□□□□ -0.09
LSM5-210ENST00000480956 PODXL2Q9NZ53 605 aa14.51□□□□□ -0.09
LSM5-210ENST00000480956 NBR1Q14596 966 aa14.5□□□□□ -0.09
LSM5-210ENST00000480956 ZBTB12Q9Y330 459 aaPredicted RBP14.48□□□□□ -0.09
LSM5-210ENST00000480956 PKD2Q13563 968 aa14.45□□□□□ -0.1
LSM5-210ENST00000480956 OSCARQ8IYS5 282 aa14.44□□□□□ -0.1
LSM5-210ENST00000480956 VASPP50552 380 aaPredicted RBP14.38□□□□□ -0.11
LSM5-210ENST00000480956 TSHZ2Q9NRE2 1034 aa14.35□□□□□ -0.11
LSM5-210ENST00000480956 IFNLR1Q8IU57 520 aaPredicted RBP14.31□□□□□ -0.12
LSM5-210ENST00000480956 NPM1P06748 294 aaKnown RBP eCLIP14.29□□□□□ -0.12
LSM5-210ENST00000480956 SPRYD3Q8NCJ5 442 aa14.29□□□□□ -0.12
LSM5-210ENST00000480956 SPDYE4A6NLX3 237 aa14.23□□□□□ -0.13
LSM5-210ENST00000480956 SPDYE2BA6NHP3 402 aa14.19□□□□□ -0.14
LSM5-210ENST00000480956 SPDYE6P0CI01 402 aa14.19□□□□□ -0.14
LSM5-210ENST00000480956 SPDYE2Q495Y8 402 aa14.19□□□□□ -0.14
LSM5-210ENST00000480956 SSUH2Q9Y2M2 353 aa14.19□□□□□ -0.14
LSM5-210ENST00000480956 SUPT5HO00267 1087 aaKnown RBP14.16□□□□□ -0.14
LSM5-210ENST00000480956 ZNF692Q9BU19 519 aaPredicted RBP14.15□□□□□ -0.14
LSM5-210ENST00000480956 DNAJC5Q9H3Z4 198 aa14.15□□□□□ -0.14
LSM5-210ENST00000480956 NPM2Q86SE8 214 aaKnown RBP14.14□□□□□ -0.15
LSM5-210ENST00000480956 PROM2Q8N271 834 aa14.12□□□□□ -0.15
LSM5-210ENST00000480956 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
LSM5-210ENST00000480956 ECM2O94769 699 aaPredicted RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms