RNA–Protein interactions for RNA: ENST00000444746.6

RIF1-205, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 7,897 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-205ENST00000444746 DCAF8L2P0C7V8 631 aa14.46□□□□□ -0.09
RIF1-205ENST00000444746 SUPT5HO00267 1087 aaKnown RBP13.72□□□□□ -0.21
RIF1-205ENST00000444746 EHMT2Q96KQ7 1210 aa13.67□□□□□ -0.22
RIF1-205ENST00000444746 SHROOM4Q9ULL8 1493 aa13.62□□□□□ -0.23
RIF1-205ENST00000444746 NISCHQ9Y2I1 1504 aa13.26□□□□□ -0.29
RIF1-205ENST00000444746 TTBK1Q5TCY1 1321 aaPredicted RBP13.12□□□□□ -0.31
RIF1-205ENST00000444746 FAM9AQ8IZU1 332 aaPredicted RBP13.06□□□□□ -0.32
RIF1-205ENST00000444746 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
RIF1-205ENST00000444746 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
RIF1-205ENST00000444746 PPARGC1BQ86YN6 1023 aaKnown RBP12.66□□□□□ -0.38
RIF1-205ENST00000444746 APLP2Q06481 763 aa12.57□□□□□ -0.4
RIF1-205ENST00000444746 ATP1B4Q9UN42 357 aaPredicted RBP12.56□□□□□ -0.4
RIF1-205ENST00000444746 TRIM41Q8WV44 630 aa12.46□□□□□ -0.41
RIF1-205ENST00000444746 YTHDC1Q96MU7 727 aaKnown RBP12.37□□□□□ -0.43
RIF1-205ENST00000444746 CCER1Q8TC90 406 aaPredicted RBP12.37□□□□□ -0.43
RIF1-205ENST00000444746 UBTFP17480 764 aaKnown RBP12.35□□□□□ -0.43
RIF1-205ENST00000444746 LOC105371045A0A1W2PR82 267 aa12.3□□□□□ -0.44
RIF1-205ENST00000444746 ITGAEP38570 1179 aa12.21□□□□□ -0.45
RIF1-205ENST00000444746 CNGB1Q14028 1251 aaPredicted RBP12.17□□□□□ -0.46
RIF1-205ENST00000444746 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
RIF1-205ENST00000444746 HNRNPUL2Q1KMD3 747 aaKnown RBP12.06□□□□□ -0.48
RIF1-205ENST00000444746 POLR3GLQ9BT43 218 aa12.05□□□□□ -0.48
RIF1-205ENST00000444746 CHIC1Q5VXU3 224 aa12.02□□□□□ -0.49
RIF1-205ENST00000444746 CENPBP07199 599 aaPredicted RBP12.02□□□□□ -0.49
RIF1-205ENST00000444746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12□□□□□ -0.49
RIF1-205ENST00000444746 ERICH6Q7L0X2 663 aa11.99□□□□□ -0.49
RIF1-205ENST00000444746 PABPN1Q86U42 306 aaKnown RBP eCLIP11.98□□□□□ -0.49
RIF1-205ENST00000444746 ZEB1P37275 1124 aaPredicted RBP11.95□□□□□ -0.5
RIF1-205ENST00000444746 MYT1LQ9UL68 1186 aa11.94□□□□□ -0.5
RIF1-205ENST00000444746 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
RIF1-205ENST00000444746 HRCP23327 699 aa11.91□□□□□ -0.5
RIF1-205ENST00000444746 NEFLP07196 543 aa11.8□□□□□ -0.52
RIF1-205ENST00000444746 ABCC9O60706 1549 aa11.78□□□□□ -0.52
RIF1-205ENST00000444746 ARID3CA6NKF2 412 aa11.75□□□□□ -0.53
RIF1-205ENST00000444746 FAM50AQ14320 339 aaKnown RBP11.73□□□□□ -0.53
RIF1-205ENST00000444746 NEUROD1Q13562 356 aa11.72□□□□□ -0.53
RIF1-205ENST00000444746 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
RIF1-205ENST00000444746 MYT1Q01538 1121 aa11.68□□□□□ -0.54
RIF1-205ENST00000444746 BCANQ96GW7 911 aa11.68□□□□□ -0.54
RIF1-205ENST00000444746 P3H3Q8IVL6 736 aa11.67□□□□□ -0.54
RIF1-205ENST00000444746 TRIM52Q96A61 297 aa11.63□□□□□ -0.55
RIF1-205ENST00000444746 FBLN2P98095 1184 aa11.61□□□□□ -0.55
RIF1-205ENST00000444746 ZNF326Q5BKZ1 582 aaKnown RBP11.61□□□□□ -0.55
RIF1-205ENST00000444746 DIEXFQ68CQ4 756 aaKnown RBP11.61□□□□□ -0.55
RIF1-205ENST00000444746 BCL11AQ9H165 835 aa11.53□□□□□ -0.56
RIF1-205ENST00000444746 GTF3C3Q9Y5Q9 886 aa11.47□□□□□ -0.57
RIF1-205ENST00000444746 DAXXQ9UER7 740 aaPredicted RBP11.42□□□□□ -0.58
RIF1-205ENST00000444746 ZNF777Q9ULD5 760 aaPredicted RBP11.41□□□□□ -0.58
RIF1-205ENST00000444746 PLPPR3Q6T4P5 718 aa11.41□□□□□ -0.58
RIF1-205ENST00000444746 SENP3Q9H4L4 574 aaPredicted RBP11.39□□□□□ -0.59
RIF1-205ENST00000444746 CLSPNQ9HAW4 1339 aa11.37□□□□□ -0.59
RIF1-205ENST00000444746 SLC24A1O60721 1099 aa11.32□□□□□ -0.6
RIF1-205ENST00000444746 SENP3-EIF4A1A0A087X0R7 540 aa11.31□□□□□ -0.6
RIF1-205ENST00000444746 HIRIP3Q9BW71 556 aaPredicted RBP11.31□□□□□ -0.6
RIF1-205ENST00000444746 CSRNP3Q8WYN3 585 aa11.3□□□□□ -0.6
RIF1-205ENST00000444746 ZNF316A6NFI3 1004 aaPredicted RBP11.29□□□□□ -0.6
RIF1-205ENST00000444746 SALL2Q9Y467 1007 aaPredicted RBP11.28□□□□□ -0.6
RIF1-205ENST00000444746 CHIC2Q9UKJ5 165 aa11.28□□□□□ -0.6
RIF1-205ENST00000444746 ANP32CO43423 234 aa11.27□□□□□ -0.6
RIF1-205ENST00000444746 SCRIBQ14160 1630 aa11.22□□□□□ -0.61
RIF1-205ENST00000444746 CHGAP10645 457 aaKnown RBP11.22□□□□□ -0.61
RIF1-205ENST00000444746 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
RIF1-205ENST00000444746 DDX10Q13206 875 aaKnown RBP11.19□□□□□ -0.62
RIF1-205ENST00000444746 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.17□□□□□ -0.627e-7■■■□□ 15.4
RIF1-205ENST00000444746 ACIN1Q9UKV3 1341 aaKnown RBP11.17□□□□□ -0.62
RIF1-205ENST00000444746 PLEKHG5O94827 1062 aa11.17□□□□□ -0.62
RIF1-205ENST00000444746 IRX6P78412 446 aaPredicted RBP11.17□□□□□ -0.62
RIF1-205ENST00000444746 FAM9BQ8IZU0 186 aa11.16□□□□□ -0.62
RIF1-205ENST00000444746 RTL5Q5HYW3 569 aaPredicted RBP11.15□□□□□ -0.62
RIF1-205ENST00000444746 FKBP8Q14318 412 aa11.14□□□□□ -0.63
RIF1-205ENST00000444746 CANXP27824 592 aaKnown RBP11.14□□□□□ -0.63
RIF1-205ENST00000444746 MYO15BQ96JP2 1530 aa11.14□□□□□ -0.63
RIF1-205ENST00000444746 KDM2AQ9Y2K7 1162 aa11.12□□□□□ -0.63
RIF1-205ENST00000444746 CDK11AQ9UQ88 783 aaPredicted RBP11.11□□□□□ -0.63
RIF1-205ENST00000444746 HNRNPUQ00839 825 aaKnown RBP eCLIP11.07□□□□□ -0.64
RIF1-205ENST00000444746 MIER1Q8N108 512 aa11.06□□□□□ -0.64
RIF1-205ENST00000444746 RRP7BPQ9NSQ0 103 aa11.05□□□□□ -0.64
RIF1-205ENST00000444746 KCNH8Q96L42 1107 aa11.01□□□□□ -0.65
RIF1-205ENST00000444746 STAG3Q9UJ98 1225 aa11.01□□□□□ -0.65
RIF1-205ENST00000444746 TONSLQ96HA7 1378 aa11□□□□□ -0.65
RIF1-205ENST00000444746 SCAF1Q9H7N4 1312 aaKnown RBP10.99□□□□□ -0.65
RIF1-205ENST00000444746 ZBTB47Q9UFB7 747 aaPredicted RBP10.98□□□□□ -0.65
RIF1-205ENST00000444746 ARXQ96QS3 562 aa10.98□□□□□ -0.65
RIF1-205ENST00000444746 ZBTB7CA1YPR0 619 aa10.97□□□□□ -0.65
RIF1-205ENST00000444746 RGL3Q3MIN7 710 aa10.95□□□□□ -0.66
RIF1-205ENST00000444746 ZCCHC6Q5VYS8 1495 aaKnown RBP10.94□□□□□ -0.66
RIF1-205ENST00000444746 NBR1Q14596 966 aa10.94□□□□□ -0.66
RIF1-205ENST00000444746 ESF1Q9H501 851 aaKnown RBP10.92□□□□□ -0.66
RIF1-205ENST00000444746 SIN3AQ96ST3 1273 aa10.92□□□□□ -0.66
RIF1-205ENST00000444746 CHMP7Q8WUX9 453 aaPredicted RBP10.91□□□□□ -0.66
RIF1-205ENST00000444746 MRS2Q9HD23 443 aa10.9□□□□□ -0.66
RIF1-205ENST00000444746 NEFMP07197 916 aa10.9□□□□□ -0.66
RIF1-205ENST00000444746 A0A0G2JS52 829 aa10.88□□□□□ -0.67
RIF1-205ENST00000444746 TMC1Q8TDI8 760 aa10.88□□□□□ -0.67
RIF1-205ENST00000444746 NPM1P06748 294 aaKnown RBP eCLIP10.86□□□□□ -0.67
RIF1-205ENST00000444746 ANP32AP39687 249 aaKnown RBP10.86□□□□□ -0.67
RIF1-205ENST00000444746 MTUS2Q5JR59 1369 aa10.86□□□□□ -0.67
RIF1-205ENST00000444746 CLIP1P30622 1438 aa10.85□□□□□ -0.67
RIF1-205ENST00000444746 DCAF1Q9Y4B6 1507 aa10.84□□□□□ -0.67
RIF1-205ENST00000444746 RSF1Q96T23 1441 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms