RNA–Protein interactions for RNA: ENST00000439122.6

HDAC8-214, Transcript of histone deacetylase 8, humanhuman

TSL 2 BASIC

Gene HDAC8, Length 2,338 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-214ENST00000439122 NISCHQ9Y2I1 1504 aa25.61■■□□□ 1.69
HDAC8-214ENST00000439122 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
HDAC8-214ENST00000439122 SHROOM4Q9ULL8 1493 aa21.68■■□□□ 1.06
HDAC8-214ENST00000439122 ZCCHC6Q5VYS8 1495 aaKnown RBP21.62■■□□□ 1.05
HDAC8-214ENST00000439122 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
HDAC8-214ENST00000439122 SUPT5HO00267 1087 aaKnown RBP21.2■□□□□ 0.98
HDAC8-214ENST00000439122 DCAF1Q9Y4B6 1507 aa21.02■□□□□ 0.96
HDAC8-214ENST00000439122 CHIC1Q5VXU3 224 aa20.52■□□□□ 0.87
HDAC8-214ENST00000439122 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
HDAC8-214ENST00000439122 SCRIBQ14160 1630 aa20.45■□□□□ 0.86
HDAC8-214ENST00000439122 ABCC9O60706 1549 aa20.38■□□□□ 0.85
HDAC8-214ENST00000439122 NACADO15069 1562 aa20.27■□□□□ 0.83
HDAC8-214ENST00000439122 RSF1Q96T23 1441 aaPredicted RBP20.19■□□□□ 0.82
HDAC8-214ENST00000439122 RB1CC1Q8TDY2 1594 aa19.97■□□□□ 0.79
HDAC8-214ENST00000439122 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
HDAC8-214ENST00000439122 LOC105371045A0A1W2PR82 267 aa19.9■□□□□ 0.78
HDAC8-214ENST00000439122 MROH2BQ7Z745 1585 aa19.88■□□□□ 0.77
HDAC8-214ENST00000439122 TRIM41Q8WV44 630 aa19.79■□□□□ 0.76
HDAC8-214ENST00000439122 WIZO95785 1651 aa19.77■□□□□ 0.76
HDAC8-214ENST00000439122 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
HDAC8-214ENST00000439122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.69■□□□□ 0.74
HDAC8-214ENST00000439122 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
HDAC8-214ENST00000439122 HRCP23327 699 aa19.59■□□□□ 0.73
HDAC8-214ENST00000439122 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
HDAC8-214ENST00000439122 SMARCA4P51532 1647 aa19.54■□□□□ 0.72
HDAC8-214ENST00000439122 TOP2AP11388 1531 aaKnown RBP19.47■□□□□ 0.71
HDAC8-214ENST00000439122 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.71
HDAC8-214ENST00000439122 EHMT2Q96KQ7 1210 aa19.42■□□□□ 0.7
HDAC8-214ENST00000439122 EIF4G1Q04637 1599 aaKnown RBP19.41■□□□□ 0.7
HDAC8-214ENST00000439122 TRIM26Q12899 539 aaPredicted RBP19.4■□□□□ 0.7
HDAC8-214ENST00000439122 BICRAQ9NZM4 1560 aa19.4■□□□□ 0.7
HDAC8-214ENST00000439122 CCDC88BA6NC98 1476 aa19.38■□□□□ 0.69
HDAC8-214ENST00000439122 SMARCA2P51531 1590 aa19.35■□□□□ 0.69
HDAC8-214ENST00000439122 ABCC8Q09428 1581 aa19.26■□□□□ 0.67
HDAC8-214ENST00000439122 PPARGC1BQ86YN6 1023 aaKnown RBP19.18■□□□□ 0.66
HDAC8-214ENST00000439122 PEG3Q9GZU2 1588 aa19.17■□□□□ 0.66
HDAC8-214ENST00000439122 ATAD2BQ9ULI0 1458 aa19.07■□□□□ 0.64
HDAC8-214ENST00000439122 SOGA1O94964 1423 aa19.05■□□□□ 0.64
HDAC8-214ENST00000439122 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
HDAC8-214ENST00000439122 WRNQ14191 1432 aaPredicted RBP eCLIP18.99■□□□□ 0.63
HDAC8-214ENST00000439122 EEA1Q15075 1411 aa18.96■□□□□ 0.63
HDAC8-214ENST00000439122 CSRNP3Q8WYN3 585 aa18.95■□□□□ 0.62
HDAC8-214ENST00000439122 RUSC2Q8N2Y8 1516 aa18.95■□□□□ 0.62
HDAC8-214ENST00000439122 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
HDAC8-214ENST00000439122 CEP162Q5TB80 1403 aa18.9■□□□□ 0.62
HDAC8-214ENST00000439122 UBTFP17480 764 aaKnown RBP18.88■□□□□ 0.61
HDAC8-214ENST00000439122 TNIKQ9UKE5 1360 aa18.88■□□□□ 0.61
HDAC8-214ENST00000439122 SYNJ1O43426 1573 aa18.88■□□□□ 0.61
HDAC8-214ENST00000439122 GOLGA3Q08378 1498 aa18.81■□□□□ 0.6
HDAC8-214ENST00000439122 TTBK1Q5TCY1 1321 aaPredicted RBP18.75■□□□□ 0.59
HDAC8-214ENST00000439122 NCAPD3P42695 1498 aa18.74■□□□□ 0.59
HDAC8-214ENST00000439122 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
HDAC8-214ENST00000439122 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
HDAC8-214ENST00000439122 KIF21BO75037 1637 aa18.7■□□□□ 0.58
HDAC8-214ENST00000439122 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
HDAC8-214ENST00000439122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.65■□□□□ 0.58
HDAC8-214ENST00000439122 CCER1Q8TC90 406 aaPredicted RBP18.61■□□□□ 0.57
HDAC8-214ENST00000439122 BIVM-ERCC5R4GMW8 1640 aa18.61■□□□□ 0.57
HDAC8-214ENST00000439122 RAPGEF2Q9Y4G8 1499 aa18.61■□□□□ 0.57
HDAC8-214ENST00000439122 CLIP1P30622 1438 aa18.59■□□□□ 0.57
HDAC8-214ENST00000439122 CFTRP13569 1480 aa18.54■□□□□ 0.56
HDAC8-214ENST00000439122 RANGAP1P46060 587 aaPredicted RBP18.53■□□□□ 0.56
HDAC8-214ENST00000439122 CUX1P39880 1505 aa18.53■□□□□ 0.56
HDAC8-214ENST00000439122 VPS8Q8N3P4 1428 aa18.48■□□□□ 0.55
HDAC8-214ENST00000439122 PRXQ9BXM0 1461 aa18.44■□□□□ 0.54
HDAC8-214ENST00000439122 APLP2Q06481 763 aa18.44■□□□□ 0.54
HDAC8-214ENST00000439122 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
HDAC8-214ENST00000439122 KIF27Q86VH2 1401 aa18.43■□□□□ 0.54
HDAC8-214ENST00000439122 PRDM2Q13029 1718 aa18.39■□□□□ 0.54
HDAC8-214ENST00000439122 CADPSQ9ULU8 1353 aa18.38■□□□□ 0.53
HDAC8-214ENST00000439122 CC2D2AQ9P2K1 1620 aa18.36■□□□□ 0.53
HDAC8-214ENST00000439122 HNRNPUL2Q1KMD3 747 aaKnown RBP18.33■□□□□ 0.53
HDAC8-214ENST00000439122 ARAP1Q96P48 1450 aa18.29■□□□□ 0.52
HDAC8-214ENST00000439122 CUX2O14529 1486 aa18.28■□□□□ 0.52
HDAC8-214ENST00000439122 FGD5Q6ZNL6 1462 aa18.23■□□□□ 0.51
HDAC8-214ENST00000439122 IGF1RP08069 1367 aa18.22■□□□□ 0.51
HDAC8-214ENST00000439122 FANCD2Q9BXW9 1451 aa18.2■□□□□ 0.5
HDAC8-214ENST00000439122 ARHGAP35Q9NRY4 1499 aa18.17■□□□□ 0.5
HDAC8-214ENST00000439122 KANK4Q5T7N3 995 aaPredicted RBP18.17■□□□□ 0.5
HDAC8-214ENST00000439122 CARMIL1Q5VZK9 1371 aa18.15■□□□□ 0.5
HDAC8-214ENST00000439122 DIEXFQ68CQ4 756 aaKnown RBP18.14■□□□□ 0.49
HDAC8-214ENST00000439122 NESP48681 1621 aa18.1■□□□□ 0.49
HDAC8-214ENST00000439122 DNMBPQ6XZF7 1577 aa18.09■□□□□ 0.49
HDAC8-214ENST00000439122 RAD54L2Q9Y4B4 1467 aa18.06■□□□□ 0.48
HDAC8-214ENST00000439122 TOPBP1Q92547 1522 aa18.06■□□□□ 0.48
HDAC8-214ENST00000439122 ZNF316A6NFI3 1004 aaPredicted RBP18.05■□□□□ 0.48
HDAC8-214ENST00000439122 POLA1P09884 1462 aaPredicted RBP18.04■□□□□ 0.48
HDAC8-214ENST00000439122 RRBP1Q9P2E9 1410 aaKnown RBP18.02■□□□□ 0.48
HDAC8-214ENST00000439122 ABCA10Q8WWZ4 1543 aa18.02■□□□□ 0.48
HDAC8-214ENST00000439122 CCNB3Q8WWL7 1395 aa17.98■□□□□ 0.47
HDAC8-214ENST00000439122 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
HDAC8-214ENST00000439122 P3H3Q8IVL6 736 aa17.95■□□□□ 0.46
HDAC8-214ENST00000439122 TIAM1Q13009 1591 aa17.95■□□□□ 0.46
HDAC8-214ENST00000439122 DHX57Q6P158 1386 aaKnown RBP17.93■□□□□ 0.46
HDAC8-214ENST00000439122 FHAD1B1AJZ9 1412 aa17.93■□□□□ 0.46
HDAC8-214ENST00000439122 MAP3K1Q13233 1512 aa17.93■□□□□ 0.46
HDAC8-214ENST00000439122 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
HDAC8-214ENST00000439122 ITGAEP38570 1179 aa17.93■□□□□ 0.46
HDAC8-214ENST00000439122 CLSPNQ9HAW4 1339 aa17.92■□□□□ 0.46
HDAC8-214ENST00000439122 CUL7Q14999 1698 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 193.6 ms