RNA–Protein interactions for RNA: ENST00000438796.6

LRCH3-206, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS P5 TSL 2 BASIC

Gene LRCH3, Length 7,394 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-206ENST00000438796 DCAF8L2P0C7V8 631 aa24.24■■□□□ 1.47
LRCH3-206ENST00000438796 EHMT2Q96KQ7 1210 aa22.69■■□□□ 1.22
LRCH3-206ENST00000438796 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
LRCH3-206ENST00000438796 SHROOM4Q9ULL8 1493 aa22.16■■□□□ 1.14
LRCH3-206ENST00000438796 TTBK1Q5TCY1 1321 aaPredicted RBP21.85■■□□□ 1.09
LRCH3-206ENST00000438796 PELP1Q8IZL8 1130 aaKnown RBP21.83■■□□□ 1.08
LRCH3-206ENST00000438796 APLP2Q06481 763 aa21.75■■□□□ 1.07
LRCH3-206ENST00000438796 RANGAP1P46060 587 aaPredicted RBP21.59■■□□□ 1.05
LRCH3-206ENST00000438796 FAM9AQ8IZU1 332 aaPredicted RBP21.55■■□□□ 1.04
LRCH3-206ENST00000438796 ATP1B4Q9UN42 357 aaPredicted RBP21.42■■□□□ 1.02
LRCH3-206ENST00000438796 ERICH6Q7L0X2 663 aa21.31■■□□□ 1
LRCH3-206ENST00000438796 PCGF6Q9BYE7 350 aa21.24■□□□□ 0.99
LRCH3-206ENST00000438796 NISCHQ9Y2I1 1504 aa21.06■□□□□ 0.96
LRCH3-206ENST00000438796 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
LRCH3-206ENST00000438796 YTHDC1Q96MU7 727 aaKnown RBP20.82■□□□□ 0.92
LRCH3-206ENST00000438796 MYT1LQ9UL68 1186 aa20.78■□□□□ 0.92
LRCH3-206ENST00000438796 UBTFP17480 764 aaKnown RBP20.77■□□□□ 0.91
LRCH3-206ENST00000438796 CENPBP07199 599 aaPredicted RBP20.76■□□□□ 0.91
LRCH3-206ENST00000438796 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
LRCH3-206ENST00000438796 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
LRCH3-206ENST00000438796 PPARGC1BQ86YN6 1023 aaKnown RBP20.68■□□□□ 0.9
LRCH3-206ENST00000438796 NEFLP07196 543 aa20.65■□□□□ 0.9
LRCH3-206ENST00000438796 POLR3GLQ9BT43 218 aa20.64■□□□□ 0.89
LRCH3-206ENST00000438796 MYT1Q01538 1121 aa20.6■□□□□ 0.89
LRCH3-206ENST00000438796 CNGB1Q14028 1251 aaPredicted RBP20.58■□□□□ 0.88
LRCH3-206ENST00000438796 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.5■□□□□ 0.87
LRCH3-206ENST00000438796 HNRNPUL2Q1KMD3 747 aaKnown RBP20.5■□□□□ 0.87
LRCH3-206ENST00000438796 ITGAEP38570 1179 aa20.45■□□□□ 0.86
LRCH3-206ENST00000438796 SLC4A1APQ9BWU0 796 aaKnown RBP20.4■□□□□ 0.86
LRCH3-206ENST00000438796 ZEB1P37275 1124 aaPredicted RBP20.39■□□□□ 0.86
LRCH3-206ENST00000438796 DAXXQ9UER7 740 aaPredicted RBP20.36■□□□□ 0.85
LRCH3-206ENST00000438796 CLSPNQ9HAW4 1339 aa19.95■□□□□ 0.78
LRCH3-206ENST00000438796 BCL11AQ9H165 835 aa19.87■□□□□ 0.77
LRCH3-206ENST00000438796 ZNF316A6NFI3 1004 aaPredicted RBP19.87■□□□□ 0.77
LRCH3-206ENST00000438796 SLC24A1O60721 1099 aa19.85■□□□□ 0.77
LRCH3-206ENST00000438796 TRIM26Q12899 539 aaPredicted RBP19.77■□□□□ 0.75
LRCH3-206ENST00000438796 LOC105371045A0A1W2PR82 267 aa19.73■□□□□ 0.75
LRCH3-206ENST00000438796 FAM50AQ14320 339 aaKnown RBP19.72■□□□□ 0.75
LRCH3-206ENST00000438796 TRIM52Q96A61 297 aa19.69■□□□□ 0.74
LRCH3-206ENST00000438796 HRCP23327 699 aa19.64■□□□□ 0.74
LRCH3-206ENST00000438796 BCANQ96GW7 911 aa19.64■□□□□ 0.74
LRCH3-206ENST00000438796 ZNF326Q5BKZ1 582 aaKnown RBP19.63■□□□□ 0.73
LRCH3-206ENST00000438796 NEUROD1Q13562 356 aa19.62■□□□□ 0.73
LRCH3-206ENST00000438796 RTL5Q5HYW3 569 aaPredicted RBP19.62■□□□□ 0.73
LRCH3-206ENST00000438796 FBLN2P98095 1184 aa19.56■□□□□ 0.72
LRCH3-206ENST00000438796 ZBTB47Q9UFB7 747 aaPredicted RBP19.53■□□□□ 0.72
LRCH3-206ENST00000438796 PLPPR3Q6T4P5 718 aa19.52■□□□□ 0.72
LRCH3-206ENST00000438796 ARID3CA6NKF2 412 aa19.41■□□□□ 0.7
LRCH3-206ENST00000438796 CANXP27824 592 aaKnown RBP19.4■□□□□ 0.7
LRCH3-206ENST00000438796 PABPN1Q86U42 306 aaKnown RBP eCLIP19.39■□□□□ 0.69
LRCH3-206ENST00000438796 DIEXFQ68CQ4 756 aaKnown RBP19.37■□□□□ 0.69
LRCH3-206ENST00000438796 NEFMP07197 916 aa19.23■□□□□ 0.67
LRCH3-206ENST00000438796 ANP32CO43423 234 aa19.21■□□□□ 0.67
LRCH3-206ENST00000438796 P3H3Q8IVL6 736 aa19.2■□□□□ 0.66
LRCH3-206ENST00000438796 ZNF777Q9ULD5 760 aaPredicted RBP19.16■□□□□ 0.66
LRCH3-206ENST00000438796 CDK11AQ9UQ88 783 aaPredicted RBP19.14■□□□□ 0.66
LRCH3-206ENST00000438796 NPM2Q86SE8 214 aaKnown RBP19.11■□□□□ 0.65
LRCH3-206ENST00000438796 ESF1Q9H501 851 aaKnown RBP19.1■□□□□ 0.65
LRCH3-206ENST00000438796 CHGAP10645 457 aaKnown RBP19.1■□□□□ 0.65
LRCH3-206ENST00000438796 STAG3Q9UJ98 1225 aa19.07■□□□□ 0.64
LRCH3-206ENST00000438796 ABCC9O60706 1549 aa19.06■□□□□ 0.64
LRCH3-206ENST00000438796 SCAF1Q9H7N4 1312 aaKnown RBP19.04■□□□□ 0.64
LRCH3-206ENST00000438796 A0A0G2JS52 829 aa19.04■□□□□ 0.64
LRCH3-206ENST00000438796 PLEKHG5O94827 1062 aa19.02■□□□□ 0.63
LRCH3-206ENST00000438796 GTF3C3Q9Y5Q9 886 aa19■□□□□ 0.63
LRCH3-206ENST00000438796 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
LRCH3-206ENST00000438796 SALL2Q9Y467 1007 aaPredicted RBP18.93■□□□□ 0.62
LRCH3-206ENST00000438796 HSP90AA1P07900 732 aaKnown RBP18.91■□□□□ 0.62
LRCH3-206ENST00000438796 ZBTB7CA1YPR0 619 aa18.86■□□□□ 0.61
LRCH3-206ENST00000438796 ANP32AP39687 249 aaKnown RBP18.85■□□□□ 0.61
LRCH3-206ENST00000438796 ARXQ96QS3 562 aa18.81■□□□□ 0.6
LRCH3-206ENST00000438796 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.61e-7■■□□□ 14.2
LRCH3-206ENST00000438796 ANP32BQ92688 251 aaKnown RBP18.77■□□□□ 0.59
LRCH3-206ENST00000438796 EIF5BO60841 1220 aaKnown RBP18.76■□□□□ 0.59
LRCH3-206ENST00000438796 FAM9BQ8IZU0 186 aa18.72■□□□□ 0.59
LRCH3-206ENST00000438796 NPM1P06748 294 aaKnown RBP eCLIP18.71■□□□□ 0.59
LRCH3-206ENST00000438796 C14orf37Q86TY3 774 aa18.69■□□□□ 0.58
LRCH3-206ENST00000438796 TULP1O00294 542 aaPredicted RBP18.66■□□□□ 0.58
LRCH3-206ENST00000438796 UPF2Q9HAU5 1272 aaKnown RBP18.64■□□□□ 0.58
LRCH3-206ENST00000438796 FKBP8Q14318 412 aa18.64■□□□□ 0.57
LRCH3-206ENST00000438796 KDM2AQ9Y2K7 1162 aa18.63■□□□□ 0.57
LRCH3-206ENST00000438796 CHIC2Q9UKJ5 165 aa18.62■□□□□ 0.57
LRCH3-206ENST00000438796 HNRNPUQ00839 825 aaKnown RBP eCLIP18.59■□□□□ 0.57
LRCH3-206ENST00000438796 NBR1Q14596 966 aa18.58■□□□□ 0.56
LRCH3-206ENST00000438796 CDK11BP21127 795 aaKnown RBP18.57■□□□□ 0.56
LRCH3-206ENST00000438796 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
LRCH3-206ENST00000438796 DDX10Q13206 875 aaKnown RBP18.53■□□□□ 0.56
LRCH3-206ENST00000438796 WDR43Q15061 677 aaKnown RBP eCLIP18.52■□□□□ 0.56
LRCH3-206ENST00000438796 TPRNQ4KMQ1 711 aa18.5■□□□□ 0.55
LRCH3-206ENST00000438796 HAP1P54257 671 aaPredicted RBP18.5■□□□□ 0.55
LRCH3-206ENST00000438796 TMC1Q8TDI8 760 aa18.5■□□□□ 0.55
LRCH3-206ENST00000438796 TAOK2Q9UL54 1235 aa18.46■□□□□ 0.55
LRCH3-206ENST00000438796 IRX6P78412 446 aaPredicted RBP18.46■□□□□ 0.55
LRCH3-206ENST00000438796 SENP3-EIF4A1A0A087X0R7 540 aa18.45■□□□□ 0.54
LRCH3-206ENST00000438796 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.44■□□□□ 0.54
LRCH3-206ENST00000438796 HIRIP3Q9BW71 556 aaPredicted RBP18.43■□□□□ 0.54
LRCH3-206ENST00000438796 CCDC136Q96JN2 1154 aa18.42■□□□□ 0.54
LRCH3-206ENST00000438796 MYH16Q9H6N6 1097 aa18.41■□□□□ 0.54
LRCH3-206ENST00000438796 PPP1R15AO75807 674 aaPredicted RBP18.41■□□□□ 0.54
LRCH3-206ENST00000438796 CSRNP3Q8WYN3 585 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms