RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 NISCHQ9Y2I1 1504 aa24.46■■□□□ 1.51
CD44-209ENST00000433892 SHROOM4Q9ULL8 1493 aa20.92■□□□□ 0.94
CD44-209ENST00000433892 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
CD44-209ENST00000433892 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
CD44-209ENST00000433892 SUPT5HO00267 1087 aaKnown RBP20.53■□□□□ 0.88
CD44-209ENST00000433892 DCAF8L2P0C7V8 631 aa20.36■□□□□ 0.85
CD44-209ENST00000433892 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
CD44-209ENST00000433892 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
CD44-209ENST00000433892 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
CD44-209ENST00000433892 ABCC9O60706 1549 aa19.51■□□□□ 0.71
CD44-209ENST00000433892 SCRIBQ14160 1630 aa19.5■□□□□ 0.71
CD44-209ENST00000433892 LOC105371045A0A1W2PR82 267 aa19.39■□□□□ 0.69
CD44-209ENST00000433892 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
CD44-209ENST00000433892 PCGF6Q9BYE7 350 aa19.36■□□□□ 0.69
CD44-209ENST00000433892 HRCP23327 699 aa19.35■□□□□ 0.69
CD44-209ENST00000433892 NACADO15069 1562 aa19.2■□□□□ 0.66
CD44-209ENST00000433892 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
CD44-209ENST00000433892 TRIM41Q8WV44 630 aa19.11■□□□□ 0.65
CD44-209ENST00000433892 CECR2Q9BXF3 1484 aa19.1■□□□□ 0.65
CD44-209ENST00000433892 MROH2BQ7Z745 1585 aa19.03■□□□□ 0.64
CD44-209ENST00000433892 FAM9AQ8IZU1 332 aaPredicted RBP18.98■□□□□ 0.63
CD44-209ENST00000433892 PPARGC1BQ86YN6 1023 aaKnown RBP18.98■□□□□ 0.63
CD44-209ENST00000433892 TRIM26Q12899 539 aaPredicted RBP18.97■□□□□ 0.63
CD44-209ENST00000433892 WIZO95785 1651 aa18.92■□□□□ 0.62
CD44-209ENST00000433892 EHMT2Q96KQ7 1210 aa18.84■□□□□ 0.61
CD44-209ENST00000433892 BAZ1AQ9NRL2 1556 aaPredicted RBP18.78■□□□□ 0.6
CD44-209ENST00000433892 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
CD44-209ENST00000433892 SMARCA4P51532 1647 aa18.62■□□□□ 0.57
CD44-209ENST00000433892 TOP2AP11388 1531 aaKnown RBP18.61■□□□□ 0.57
CD44-209ENST00000433892 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
CD44-209ENST00000433892 CCDC88BA6NC98 1476 aa18.56■□□□□ 0.56
CD44-209ENST00000433892 ZEB1P37275 1124 aaPredicted RBP18.53■□□□□ 0.56
CD44-209ENST00000433892 ABCC8Q09428 1581 aa18.52■□□□□ 0.56
CD44-209ENST00000433892 SMARCA2P51531 1590 aa18.52■□□□□ 0.55
CD44-209ENST00000433892 PABPN1Q86U42 306 aaKnown RBP eCLIP18.47■□□□□ 0.55
CD44-209ENST00000433892 BICRAQ9NZM4 1560 aa18.39■□□□□ 0.53
CD44-209ENST00000433892 SOGA1O94964 1423 aa18.36■□□□□ 0.53
CD44-209ENST00000433892 CEP162Q5TB80 1403 aa18.27■□□□□ 0.52
CD44-209ENST00000433892 RUSC2Q8N2Y8 1516 aa18.27■□□□□ 0.52
CD44-209ENST00000433892 CSRNP3Q8WYN3 585 aa18.26■□□□□ 0.51
CD44-209ENST00000433892 PEG3Q9GZU2 1588 aa18.24■□□□□ 0.51
CD44-209ENST00000433892 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.24■□□□□ 0.51
CD44-209ENST00000433892 TNIKQ9UKE5 1360 aa18.24■□□□□ 0.51
CD44-209ENST00000433892 WRNQ14191 1432 aaPredicted RBP eCLIP18.23■□□□□ 0.51
CD44-209ENST00000433892 TTBK1Q5TCY1 1321 aaPredicted RBP18.23■□□□□ 0.51
CD44-209ENST00000433892 EEA1Q15075 1411 aa18.23■□□□□ 0.51
CD44-209ENST00000433892 UBTFP17480 764 aaKnown RBP18.21■□□□□ 0.51
CD44-209ENST00000433892 CCER1Q8TC90 406 aaPredicted RBP18.19■□□□□ 0.5
CD44-209ENST00000433892 ATAD2BQ9ULI0 1458 aa18.15■□□□□ 0.5
CD44-209ENST00000433892 GOLGA3Q08378 1498 aa18.12■□□□□ 0.49
CD44-209ENST00000433892 BAZ1BQ9UIG0 1483 aaKnown RBP18.11■□□□□ 0.49
CD44-209ENST00000433892 SYNJ1O43426 1573 aa18.11■□□□□ 0.49
CD44-209ENST00000433892 CEP164Q9UPV0 1460 aa18.02■□□□□ 0.48
CD44-209ENST00000433892 KIF21BO75037 1637 aa17.97■□□□□ 0.47
CD44-209ENST00000433892 CLIP1P30622 1438 aa17.93■□□□□ 0.46
CD44-209ENST00000433892 RAPGEF2Q9Y4G8 1499 aa17.91■□□□□ 0.46
CD44-209ENST00000433892 RANGAP1P46060 587 aaPredicted RBP17.87■□□□□ 0.45
CD44-209ENST00000433892 TOP2BQ02880 1626 aa17.87■□□□□ 0.45
CD44-209ENST00000433892 VPS8Q8N3P4 1428 aa17.85■□□□□ 0.45
CD44-209ENST00000433892 SCAF1Q9H7N4 1312 aaKnown RBP17.83■□□□□ 0.45
CD44-209ENST00000433892 DIEXFQ68CQ4 756 aaKnown RBP17.82■□□□□ 0.44
CD44-209ENST00000433892 HNRNPUL2Q1KMD3 747 aaKnown RBP17.82■□□□□ 0.44
CD44-209ENST00000433892 APLP2Q06481 763 aa17.8■□□□□ 0.44
CD44-209ENST00000433892 NCAPD3P42695 1498 aa17.79■□□□□ 0.44
CD44-209ENST00000433892 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
CD44-209ENST00000433892 HMGXB3Q12766 1538 aa17.76■□□□□ 0.43
CD44-209ENST00000433892 PRXQ9BXM0 1461 aa17.71■□□□□ 0.43
CD44-209ENST00000433892 CUX1P39880 1505 aa17.71■□□□□ 0.43
CD44-209ENST00000433892 ERICH3Q5RHP9 1530 aa17.69■□□□□ 0.42
CD44-209ENST00000433892 ZNF316A6NFI3 1004 aaPredicted RBP17.68■□□□□ 0.42
CD44-209ENST00000433892 ACIN1Q9UKV3 1341 aaKnown RBP17.66■□□□□ 0.42
CD44-209ENST00000433892 CFTRP13569 1480 aa17.66■□□□□ 0.42
CD44-209ENST00000433892 NEUROD1Q13562 356 aa17.65■□□□□ 0.42
CD44-209ENST00000433892 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
CD44-209ENST00000433892 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
CD44-209ENST00000433892 KANK4Q5T7N3 995 aaPredicted RBP17.58■□□□□ 0.4
CD44-209ENST00000433892 CENPBP07199 599 aaPredicted RBP17.56■□□□□ 0.4
CD44-209ENST00000433892 ARHGAP35Q9NRY4 1499 aa17.48■□□□□ 0.39
CD44-209ENST00000433892 GTF3C3Q9Y5Q9 886 aa17.47■□□□□ 0.39
CD44-209ENST00000433892 CUX2O14529 1486 aa17.47■□□□□ 0.39
CD44-209ENST00000433892 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
CD44-209ENST00000433892 IGF1RP08069 1367 aa17.46■□□□□ 0.39
CD44-209ENST00000433892 PRDM2Q13029 1718 aa17.46■□□□□ 0.38
CD44-209ENST00000433892 MIER1Q8N108 512 aa17.45■□□□□ 0.38
CD44-209ENST00000433892 DHX57Q6P158 1386 aaKnown RBP17.44■□□□□ 0.38
CD44-209ENST00000433892 RRBP1Q9P2E9 1410 aaKnown RBP17.43■□□□□ 0.38
CD44-209ENST00000433892 YTHDC1Q96MU7 727 aaKnown RBP17.42■□□□□ 0.38
CD44-209ENST00000433892 PELP1Q8IZL8 1130 aaKnown RBP17.41■□□□□ 0.38
CD44-209ENST00000433892 CLSPNQ9HAW4 1339 aa17.4■□□□□ 0.38
CD44-209ENST00000433892 FGD5Q6ZNL6 1462 aa17.4■□□□□ 0.38
CD44-209ENST00000433892 CARMIL1Q5VZK9 1371 aa17.38■□□□□ 0.37
CD44-209ENST00000433892 CCNB3Q8WWL7 1395 aa17.38■□□□□ 0.37
CD44-209ENST00000433892 ITGAEP38570 1179 aa17.36■□□□□ 0.37
CD44-209ENST00000433892 CC2D2AQ9P2K1 1620 aa17.33■□□□□ 0.36
CD44-209ENST00000433892 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
CD44-209ENST00000433892 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
CD44-209ENST00000433892 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
CD44-209ENST00000433892 MAP3K1Q13233 1512 aa17.25■□□□□ 0.35
CD44-209ENST00000433892 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
CD44-209ENST00000433892 LRRC9Q6ZRR7 1453 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms