RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CHIC1Q5VXU3 224 aa7.73□□□□□ -1.17
MCF2-204ENST00000414978 AEBP2Q6ZN18 517 aaPredicted RBP7.68□□□□□ -1.18
MCF2-204ENST00000414978 PHF23Q9BUL5 403 aaPredicted RBP6.96□□□□□ -1.3
MCF2-204ENST00000414978 EHMT2Q96KQ7 1210 aa6.55□□□□□ -1.36
MCF2-204ENST00000414978 PLPPR3Q6T4P5 718 aa6.47□□□□□ -1.37
MCF2-204ENST00000414978 SENP3Q9H4L4 574 aaPredicted RBP6.31□□□□□ -1.4
MCF2-204ENST00000414978 ADRA2BP18089 450 aa6.3□□□□□ -1.4
MCF2-204ENST00000414978 KCNA4P22459 653 aa6.27□□□□□ -1.41
MCF2-204ENST00000414978 PPP6R1Q9UPN7 881 aa6.12□□□□□ -1.43
MCF2-204ENST00000414978 SLC24A1O60721 1099 aa6.07□□□□□ -1.44
MCF2-204ENST00000414978 CSRNP3Q8WYN3 585 aa6.02□□□□□ -1.45
MCF2-204ENST00000414978 SLC4A1APQ9BWU0 796 aaKnown RBP5.98□□□□□ -1.45
MCF2-204ENST00000414978 FOXD1Q16676 465 aa5.93□□□□□ -1.46
MCF2-204ENST00000414978 PPP4R3CPQ6ZMV5 832 aa5.83□□□□□ -1.48
MCF2-204ENST00000414978 PIAS4Q8N2W9 510 aaPredicted RBP5.78□□□□□ -1.48
MCF2-204ENST00000414978 RTN4Q9NQC3 1192 aaKnown RBP5.78□□□□□ -1.48
MCF2-204ENST00000414978 ZBTB22O15209 634 aa5.76□□□□□ -1.49
MCF2-204ENST00000414978 NPM3O75607 178 aaKnown RBP5.72□□□□□ -1.49
MCF2-204ENST00000414978 NISCHQ9Y2I1 1504 aa5.69□□□□□ -1.5
MCF2-204ENST00000414978 NCBP3Q53F19 620 aaKnown RBP5.68□□□□□ -1.5
MCF2-204ENST00000414978 AMER1Q5JTC6 1135 aaPredicted RBP5.53□□□□□ -1.52
MCF2-204ENST00000414978 MAPK8IP2Q13387 824 aaPredicted RBP5.52□□□□□ -1.53
MCF2-204ENST00000414978 FKBP8Q14318 412 aa5.52□□□□□ -1.53
MCF2-204ENST00000414978 CCDC180Q9P1Z9 1646 aa5.5□□□□□ -1.53
MCF2-204ENST00000414978 FOXD4L1Q9NU39 408 aa5.5□□□□□ -1.53
MCF2-204ENST00000414978 CNKSR2Q8WXI2 1034 aa5.47□□□□□ -1.53
MCF2-204ENST00000414978 SCAF1Q9H7N4 1312 aaKnown RBP5.4□□□□□ -1.55
MCF2-204ENST00000414978 DCAF8L2P0C7V8 631 aa5.39□□□□□ -1.55
MCF2-204ENST00000414978 DNAJC5BQ9UF47 199 aa5.38□□□□□ -1.55
MCF2-204ENST00000414978 PRKCSHP14314 528 aaPredicted RBP5.35□□□□□ -1.55
MCF2-204ENST00000414978 ABCC9O60706 1549 aa5.31□□□□□ -1.56
MCF2-204ENST00000414978 SLC4A2P04920 1241 aa5.29□□□□□ -1.56
MCF2-204ENST00000414978 HAP1P54257 671 aaPredicted RBP5.27□□□□□ -1.57
MCF2-204ENST00000414978 DCAF8L1A6NGE4 600 aa5.26□□□□□ -1.57
MCF2-204ENST00000414978 DAXXQ9UER7 740 aaPredicted RBP5.25□□□□□ -1.57
MCF2-204ENST00000414978 TIMELESSQ9UNS1 1208 aa5.24□□□□□ -1.57
MCF2-204ENST00000414978 RNF216Q9NWF9 866 aaPredicted RBP5.22□□□□□ -1.57
MCF2-204ENST00000414978 ATF5Q9Y2D1 282 aaPredicted RBP5.21□□□□□ -1.58
MCF2-204ENST00000414978 TAOK2Q9UL54 1235 aa5.2□□□□□ -1.58
MCF2-204ENST00000414978 RB1CC1Q8TDY2 1594 aa5.2□□□□□ -1.58
MCF2-204ENST00000414978 UNC13AQ9UPW8 1703 aa5.18□□□□□ -1.58
MCF2-204ENST00000414978 MYCNP04198 464 aaPredicted RBP5.18□□□□□ -1.58
MCF2-204ENST00000414978 PLCB2Q00722 1185 aa5.18□□□□□ -1.58
MCF2-204ENST00000414978 SHROOM4Q9ULL8 1493 aa5.17□□□□□ -1.58
MCF2-204ENST00000414978 MSH5O43196 834 aa5.15□□□□□ -1.59
MCF2-204ENST00000414978 NACADO15069 1562 aa5.14□□□□□ -1.59
MCF2-204ENST00000414978 TPRNQ4KMQ1 711 aa5.13□□□□□ -1.59
MCF2-204ENST00000414978 KDM2AQ9Y2K7 1162 aa5.13□□□□□ -1.59
MCF2-204ENST00000414978 MYO15BQ96JP2 1530 aa5.1□□□□□ -1.59
MCF2-204ENST00000414978 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.1□□□□□ -1.59
MCF2-204ENST00000414978 CFAP44Q96MT7 982 aa5.09□□□□□ -1.6
MCF2-204ENST00000414978 FBLN2P98095 1184 aa5.08□□□□□ -1.6
MCF2-204ENST00000414978 BCANQ96GW7 911 aa5.08□□□□□ -1.6
MCF2-204ENST00000414978 HOXD11P31277 338 aaPredicted RBP5.07□□□□□ -1.6
MCF2-204ENST00000414978 ARXQ96QS3 562 aa5.07□□□□□ -1.6
MCF2-204ENST00000414978 DMRT2Q9Y5R5 561 aa5.07□□□□□ -1.6
MCF2-204ENST00000414978 DNAJC5Q9H3Z4 198 aa5.06□□□□□ -1.6
MCF2-204ENST00000414978 ATXN8OSP0DMR3 200 aa5.06□□□□□ -1.6
MCF2-204ENST00000414978 BICRAQ9NZM4 1560 aa5.06□□□□□ -1.6
MCF2-204ENST00000414978 PAXIP1Q6ZW49 1069 aaPredicted RBP5.04□□□□□ -1.6
MCF2-204ENST00000414978 SPDYE4A6NLX3 237 aa5.02□□□□□ -1.61
MCF2-204ENST00000414978 IFNLR1Q8IU57 520 aaPredicted RBP5.02□□□□□ -1.61
MCF2-204ENST00000414978 VASPP50552 380 aaPredicted RBP5.01□□□□□ -1.61
MCF2-204ENST00000414978 KLHL34Q8N239 644 aa5□□□□□ -1.61
MCF2-204ENST00000414978 TULP1O00294 542 aaPredicted RBP4.98□□□□□ -1.61
MCF2-204ENST00000414978 PROM2Q8N271 834 aa4.98□□□□□ -1.61
MCF2-204ENST00000414978 FBXO3Q9UK99 471 aa4.98□□□□□ -1.61
MCF2-204ENST00000414978 CUX2O14529 1486 aa4.97□□□□□ -1.61
MCF2-204ENST00000414978 PKD2Q13563 968 aa4.97□□□□□ -1.61
MCF2-204ENST00000414978 U3KPZ7 1027 aaPredicted RBP4.97□□□□□ -1.61
MCF2-204ENST00000414978 CC2D2AQ9P2K1 1620 aa4.97□□□□□ -1.61
MCF2-204ENST00000414978 VSIG10Q8N0Z9 540 aa4.96□□□□□ -1.62
MCF2-204ENST00000414978 TRHP20396 242 aaPredicted RBP4.96□□□□□ -1.62
MCF2-204ENST00000414978 ZNF219Q9P2Y4 722 aaPredicted RBP4.96□□□□□ -1.62
MCF2-204ENST00000414978 TSHZ2Q9NRE2 1034 aa4.95□□□□□ -1.62
MCF2-204ENST00000414978 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.95□□□□□ -1.62
MCF2-204ENST00000414978 NPM1P06748 294 aaKnown RBP eCLIP4.94□□□□□ -1.62
MCF2-204ENST00000414978 ECM2O94769 699 aaPredicted RBP4.93□□□□□ -1.62
MCF2-204ENST00000414978 SAMD1Q6SPF0 538 aaPredicted RBP4.93□□□□□ -1.62
MCF2-204ENST00000414978 MKRN4PQ13434 485 aaPredicted RBP4.92□□□□□ -1.62
MCF2-204ENST00000414978 EIF4G1Q04637 1599 aaKnown RBP4.9□□□□□ -1.62
MCF2-204ENST00000414978 CECR2Q9BXF3 1484 aa4.9□□□□□ -1.62
MCF2-204ENST00000414978 CHGAP10645 457 aaKnown RBP4.9□□□□□ -1.63
MCF2-204ENST00000414978 RGL2O15211 777 aa4.89□□□□□ -1.63
MCF2-204ENST00000414978 DCAF1Q9Y4B6 1507 aa4.89□□□□□ -1.63
MCF2-204ENST00000414978 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.89□□□□□ -1.63
MCF2-204ENST00000414978 HNRNPUL2Q1KMD3 747 aaKnown RBP4.89□□□□□ -1.63
MCF2-204ENST00000414978 TMEM132AQ24JP5 1023 aa4.89□□□□□ -1.63
MCF2-204ENST00000414978 CIZ1Q9ULV3 898 aaPredicted RBP4.88□□□□□ -1.63
MCF2-204ENST00000414978 NBR1Q14596 966 aa4.88□□□□□ -1.63
MCF2-204ENST00000414978 GTF3C3Q9Y5Q9 886 aa4.88□□□□□ -1.63
MCF2-204ENST00000414978 POLA2Q14181 598 aa4.87□□□□□ -1.63
MCF2-204ENST00000414978 PLCD3Q8N3E9 789 aa4.87□□□□□ -1.63
MCF2-204ENST00000414978 SPINK5Q9NQ38 1064 aaPredicted RBP4.86□□□□□ -1.63
MCF2-204ENST00000414978 ABCB7O75027 752 aa4.85□□□□□ -1.63
MCF2-204ENST00000414978 SPRYD3Q8NCJ5 442 aa4.85□□□□□ -1.63
MCF2-204ENST00000414978 CAPN15O75808 1086 aa4.83□□□□□ -1.64
MCF2-204ENST00000414978 HRCP23327 699 aa4.82□□□□□ -1.64
MCF2-204ENST00000414978 MIER1Q8N108 512 aa4.82□□□□□ -1.64
MCF2-204ENST00000414978 BBXQ8WY36 941 aaPredicted RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms