RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
UPF2-203ENST00000397053 SUPT5HO00267 1087 aaKnown RBP11.63□□□□□ -0.55
UPF2-203ENST00000397053 FAM9AQ8IZU1 332 aaPredicted RBP11.5□□□□□ -0.57
UPF2-203ENST00000397053 EHMT2Q96KQ7 1210 aa11.5□□□□□ -0.57
UPF2-203ENST00000397053 PELP1Q8IZL8 1130 aaKnown RBP11.48□□□□□ -0.57
UPF2-203ENST00000397053 APLP2Q06481 763 aa11.45□□□□□ -0.58
UPF2-203ENST00000397053 SHROOM4Q9ULL8 1493 aa11.22□□□□□ -0.61
UPF2-203ENST00000397053 TTBK1Q5TCY1 1321 aaPredicted RBP11.09□□□□□ -0.63
UPF2-203ENST00000397053 ATP1B4Q9UN42 357 aaPredicted RBP11.08□□□□□ -0.64
UPF2-203ENST00000397053 RANGAP1P46060 587 aaPredicted RBP11.06□□□□□ -0.64
UPF2-203ENST00000397053 ERICH6Q7L0X2 663 aa11.02□□□□□ -0.65
UPF2-203ENST00000397053 CCER1Q8TC90 406 aaPredicted RBP10.99□□□□□ -0.65
UPF2-203ENST00000397053 PCGF6Q9BYE7 350 aa10.91□□□□□ -0.66
UPF2-203ENST00000397053 MYT1LQ9UL68 1186 aa10.89□□□□□ -0.67
UPF2-203ENST00000397053 UBTFP17480 764 aaKnown RBP10.8□□□□□ -0.68
UPF2-203ENST00000397053 CENPBP07199 599 aaPredicted RBP10.79□□□□□ -0.68
UPF2-203ENST00000397053 NEFLP07196 543 aa10.78□□□□□ -0.68
UPF2-203ENST00000397053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.73□□□□□ -0.69
UPF2-203ENST00000397053 HNRNPUL2Q1KMD3 747 aaKnown RBP10.73□□□□□ -0.69
UPF2-203ENST00000397053 TRIM41Q8WV44 630 aa10.73□□□□□ -0.69
UPF2-203ENST00000397053 NISCHQ9Y2I1 1504 aa10.7□□□□□ -0.7
UPF2-203ENST00000397053 CHIC1Q5VXU3 224 aa10.66□□□□□ -0.7
UPF2-203ENST00000397053 POLR3GLQ9BT43 218 aa10.65□□□□□ -0.7
UPF2-203ENST00000397053 DAXXQ9UER7 740 aaPredicted RBP10.63□□□□□ -0.71
UPF2-203ENST00000397053 ZEB1P37275 1124 aaPredicted RBP10.61□□□□□ -0.71
UPF2-203ENST00000397053 SLC4A1APQ9BWU0 796 aaKnown RBP10.58□□□□□ -0.72
UPF2-203ENST00000397053 YTHDC1Q96MU7 727 aaKnown RBP10.56□□□□□ -0.72
UPF2-203ENST00000397053 ITGAEP38570 1179 aa10.52□□□□□ -0.72
UPF2-203ENST00000397053 CNGB1Q14028 1251 aaPredicted RBP10.52□□□□□ -0.72
UPF2-203ENST00000397053 MYT1Q01538 1121 aa10.44□□□□□ -0.74
UPF2-203ENST00000397053 PPARGC1BQ86YN6 1023 aaKnown RBP10.43□□□□□ -0.74
UPF2-203ENST00000397053 CLSPNQ9HAW4 1339 aa10.41□□□□□ -0.74
UPF2-203ENST00000397053 SLC24A1O60721 1099 aa10.31□□□□□ -0.76
UPF2-203ENST00000397053 ZNF316A6NFI3 1004 aaPredicted RBP10.3□□□□□ -0.76
UPF2-203ENST00000397053 ZBTB47Q9UFB7 747 aaPredicted RBP10.29□□□□□ -0.76
UPF2-203ENST00000397053 BCANQ96GW7 911 aa10.27□□□□□ -0.77
UPF2-203ENST00000397053 TRIM52Q96A61 297 aa10.22□□□□□ -0.77
UPF2-203ENST00000397053 FBLN2P98095 1184 aa10.21□□□□□ -0.78
UPF2-203ENST00000397053 RTL5Q5HYW3 569 aaPredicted RBP10.2□□□□□ -0.78
UPF2-203ENST00000397053 BCL11AQ9H165 835 aa10.2□□□□□ -0.78
UPF2-203ENST00000397053 NEFMP07197 916 aa10.18□□□□□ -0.78
UPF2-203ENST00000397053 FAM50AQ14320 339 aaKnown RBP10.17□□□□□ -0.78
UPF2-203ENST00000397053 ZNF326Q5BKZ1 582 aaKnown RBP10.16□□□□□ -0.78
UPF2-203ENST00000397053 ESF1Q9H501 851 aaKnown RBP10.15□□□□□ -0.78
UPF2-203ENST00000397053 TRIM26Q12899 539 aaPredicted RBP10.14□□□□□ -0.79
UPF2-203ENST00000397053 CANXP27824 592 aaKnown RBP10.08□□□□□ -0.8
UPF2-203ENST00000397053 PLPPR3Q6T4P5 718 aa10.07□□□□□ -0.8
UPF2-203ENST00000397053 NEUROD1Q13562 356 aa10.06□□□□□ -0.8
UPF2-203ENST00000397053 HRCP23327 699 aa10.05□□□□□ -0.8
UPF2-203ENST00000397053 STAG3Q9UJ98 1225 aa10.02□□□□□ -0.81
UPF2-203ENST00000397053 PABPN1Q86U42 306 aaKnown RBP eCLIP9.99□□□□□ -0.81
UPF2-203ENST00000397053 LOC105371045A0A1W2PR82 267 aa9.98□□□□□ -0.81
UPF2-203ENST00000397053 NPM1P06748 294 aaKnown RBP eCLIP9.97□□□□□ -0.81
UPF2-203ENST00000397053 ARID3CA6NKF2 412 aa9.97□□□□□ -0.81
UPF2-203ENST00000397053 CHGAP10645 457 aaKnown RBP9.96□□□□□ -0.81
UPF2-203ENST00000397053 A0A0G2JS52 829 aa9.95□□□□□ -0.82
UPF2-203ENST00000397053 ANP32CO43423 234 aa9.95□□□□□ -0.82
UPF2-203ENST00000397053 ZNF777Q9ULD5 760 aaPredicted RBP9.94□□□□□ -0.82
UPF2-203ENST00000397053 NPM2Q86SE8 214 aaKnown RBP9.92□□□□□ -0.82
UPF2-203ENST00000397053 SCAF1Q9H7N4 1312 aaKnown RBP9.91□□□□□ -0.82
UPF2-203ENST00000397053 DIEXFQ68CQ4 756 aaKnown RBP9.9□□□□□ -0.83
UPF2-203ENST00000397053 CDK11AQ9UQ88 783 aaPredicted RBP9.89□□□□□ -0.83
UPF2-203ENST00000397053 P3H3Q8IVL6 736 aa9.87□□□□□ -0.83
UPF2-203ENST00000397053 HSP90AA1P07900 732 aaKnown RBP9.86□□□□□ -0.83
UPF2-203ENST00000397053 CDK11BP21127 795 aaKnown RBP9.83□□□□□ -0.84
UPF2-203ENST00000397053 ANP32BQ92688 251 aaKnown RBP9.83□□□□□ -0.84
UPF2-203ENST00000397053 PLEKHG5O94827 1062 aa9.79□□□□□ -0.84
UPF2-203ENST00000397053 C14orf37Q86TY3 774 aa9.78□□□□□ -0.84
UPF2-203ENST00000397053 UPF2Q9HAU5 1272 aaKnown RBP9.77□□□□□ -0.85
UPF2-203ENST00000397053 ABCC9O60706 1549 aa9.76□□□□□ -0.85
UPF2-203ENST00000397053 ANP32AP39687 249 aaKnown RBP9.76□□□□□ -0.85
UPF2-203ENST00000397053 HAP1P54257 671 aaPredicted RBP9.76□□□□□ -0.85
UPF2-203ENST00000397053 ZBTB7CA1YPR0 619 aa9.75□□□□□ -0.85
UPF2-203ENST00000397053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.73□□□□□ -0.855e-7■■■□□ 15.9
UPF2-203ENST00000397053 PPP1R15AO75807 674 aaPredicted RBP9.7□□□□□ -0.86
UPF2-203ENST00000397053 ARXQ96QS3 562 aa9.7□□□□□ -0.86
UPF2-203ENST00000397053 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.69□□□□□ -0.86
UPF2-203ENST00000397053 SALL2Q9Y467 1007 aaPredicted RBP9.69□□□□□ -0.86
UPF2-203ENST00000397053 TSPY4P0CV99 314 aa9.66□□□□□ -0.86
UPF2-203ENST00000397053 TSPY10P0CW01 314 aa9.66□□□□□ -0.86
UPF2-203ENST00000397053 SENP3Q9H4L4 574 aaPredicted RBP9.65□□□□□ -0.87
UPF2-203ENST00000397053 MYH16Q9H6N6 1097 aa9.65□□□□□ -0.87
UPF2-203ENST00000397053 ARID4BQ4LE39 1312 aaPredicted RBP9.65□□□□□ -0.87
UPF2-203ENST00000397053 NPHP1O15259 732 aa9.64□□□□□ -0.87
UPF2-203ENST00000397053 WDR43Q15061 677 aaKnown RBP eCLIP9.64□□□□□ -0.87
UPF2-203ENST00000397053 TONSLQ96HA7 1378 aa9.63□□□□□ -0.87
UPF2-203ENST00000397053 TULP1O00294 542 aaPredicted RBP9.63□□□□□ -0.87
UPF2-203ENST00000397053 EIF5BO60841 1220 aaKnown RBP9.63□□□□□ -0.87
UPF2-203ENST00000397053 TMC1Q8TDI8 760 aa9.62□□□□□ -0.87
UPF2-203ENST00000397053 GTF3C3Q9Y5Q9 886 aa9.61□□□□□ -0.87
UPF2-203ENST00000397053 FAM9BQ8IZU0 186 aa9.61□□□□□ -0.87
UPF2-203ENST00000397053 CSRNP3Q8WYN3 585 aa9.61□□□□□ -0.87
UPF2-203ENST00000397053 KDM2AQ9Y2K7 1162 aa9.6□□□□□ -0.87
UPF2-203ENST00000397053 LMOD2Q6P5Q4 547 aa9.6□□□□□ -0.87
UPF2-203ENST00000397053 CHIC2Q9UKJ5 165 aa9.59□□□□□ -0.87
UPF2-203ENST00000397053 HNRNPUQ00839 825 aaKnown RBP eCLIP9.59□□□□□ -0.87
UPF2-203ENST00000397053 CHMP7Q8WUX9 453 aaPredicted RBP9.58□□□□□ -0.88
UPF2-203ENST00000397053 KCNH8Q96L42 1107 aa9.56□□□□□ -0.88
UPF2-203ENST00000397053 ZRSR1Q15695 479 aaKnown RBP9.54□□□□□ -0.88
UPF2-203ENST00000397053 CCDC136Q96JN2 1154 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms